mRNA_M-pyrifera_M_contig81807.19147.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81807.19147.1
Unique NamemRNA_M-pyrifera_M_contig81807.19147.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81807.19147.1 vs. uniprot
Match: A0A2D5B0G5_9BACT (Biotin carboxyl carrier protein of acetyl-CoA carboxylase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5B0G5_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 4.270e-17
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   55 LTSPEVGTFTGAKPAGAIVQPGEVVGVIERLGVRFELVVPAGVSGRVANTPPARTHAPTAYGQELYHLEPV 267
            L +PEVGTFT     GA++ PG   GV+ RL V FEL+VPAGV+GR+ + PP R HAP  YG  LY L P+
Sbjct:   18 LRAPEVGTFTCVVEEGAVLTPGSRAGVLHRLDVAFELIVPAGVTGRIVSIPPERVHAPVEYGAALYELAPL 88
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BLAST of mRNA_M-pyrifera_M_contig81807.19147.1 vs. uniprot
Match: A0A521KG07_9BACT (Lipoyl-binding domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KG07_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 1.330e-11
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   55 LTSPEVGTFTGAKPAGAIVQPGEVVGVIERLGVRFELVVPAGVSGRVANTPPARTHAPTAYGQELYHLEPVGDVSA 282
            L +P  G +T     G ++Q GEV G +  LG   ELVVPAGV GRV   PP R  AP AYG  L  L P+ D++A
Sbjct:   19 LLAPSPGAYTRGPAQGRVLQAGEVAGALIALGRARELVVPAGVHGRVVGAPPERVLAPVAYGDVLVELAPLSDLAA 94
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BLAST of mRNA_M-pyrifera_M_contig81807.19147.1 vs. uniprot
Match: A0A356KED5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KED5_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 5.270e-6
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   52 RLTSPEVGTFTGAKPAGAIVQPGEVVGVIERLGVRFELVVPAGVSGRVANTPPARTHAPTAYGQELYHLE 261
            RLTSPEVG       AGA++ PG  V ++  L    ELVVPAGV+GRV + P A   AP  +G E+  L+
Sbjct:  523 RLTSPEVGIAVEQPRAGAVLVPGARVALLSTLYETVELVVPAGVAGRVLDPPSAP--APLGHGDEVLALQ 590
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81807.19147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2D5B0G5_9BACT4.270e-1754.93Biotin carboxyl carrier protein of acetyl-CoA carb... [more]
A0A521KG07_9BACT1.330e-1147.37Lipoyl-binding domain-containing protein n=1 Tax=P... [more]
A0A356KED5_9BACT5.270e-647.14Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81807contigM-pyrifera_M_contig81807:10..324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.584476-CDS-M-pyrifera_M_contig81807:9..3241622816725.584476-CDS-M-pyrifera_M_contig81807:9..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81807 10..324 -
1692278142.5490227-CDS-M-pyrifera_M_contig81807:9..3241692278142.5490227-CDS-M-pyrifera_M_contig81807:9..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81807 10..324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81807.19147.1prot_M-pyrifera_M_contig81807.19147.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81807 10..324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81807.19147.1

>prot_M-pyrifera_M_contig81807.19147.1 ID=prot_M-pyrifera_M_contig81807.19147.1|Name=mRNA_M-pyrifera_M_contig81807.19147.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MTQTLELLSAPDDQGGTRLTSPEVGTFTGAKPAGAIVQPGEVVGVIERLG
VRFELVVPAGVSGRVANTPPARTHAPTAYGQELYHLEPVGDVSAELASAA
EAGAA
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mRNA from alignment at M-pyrifera_M_contig81807:10..324-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81807.19147.1 ID=mRNA_M-pyrifera_M_contig81807.19147.1|Name=mRNA_M-pyrifera_M_contig81807.19147.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig81807:10..324- (Macrocystis pyrifera P11B4 male)
ATGACCCAGACGCTCGAGCTCCTCTCCGCACCCGACGATCAAGGCGGGAC
CCGCCTCACCTCGCCCGAGGTCGGAACGTTCACCGGCGCCAAGCCCGCCG
GCGCCATCGTGCAGCCCGGCGAGGTCGTCGGCGTCATCGAGCGGCTCGGC
GTGCGCTTCGAGTTGGTCGTGCCCGCGGGTGTCAGCGGGCGCGTCGCGAA
CACGCCGCCCGCGCGCACCCACGCGCCGACCGCGTACGGCCAGGAGCTCT
ACCACCTGGAGCCGGTCGGCGACGTCAGCGCCGAGCTCGCCAGCGCGGCC
GAGGCCGGCGCCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81807:10..324-

>mRNA_M-pyrifera_M_contig81807.19147.1 ID=mRNA_M-pyrifera_M_contig81807.19147.1|Name=mRNA_M-pyrifera_M_contig81807.19147.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig81807:10..324- (Macrocystis pyrifera P11B4 male)
ATGACCCAGACGCTCGAGCTCCTCTCCGCACCCGACGATCAAGGCGGGAC
CCGCCTCACCTCGCCCGAGGTCGGAACGTTCACCGGCGCCAAGCCCGCCG
GCGCCATCGTGCAGCCCGGCGAGGTCGTCGGCGTCATCGAGCGGCTCGGC
GTGCGCTTCGAGTTGGTCGTGCCCGCGGGTGTCAGCGGGCGCGTCGCGAA
CACGCCGCCCGCGCGCACCCACGCGCCGACCGCGTACGGCCAGGAGCTCT
ACCACCTGGAGCCGGTCGGCGACGTCAGCGCCGAGCTCGCCAGCGCGGCC
GAGGCCGGCGCCGCGATGACCCAGACGCTCGAGCTCCTCTCCGCACCCGA
CGATCAAGGCGGGACCCGCCTCACCTCGCCCGAGGTCGGAACGTTCACCG
GCGCCAAGCCCGCCGGCGCCATCGTGCAGCCCGGCGAGGTCGTCGGCGTC
ATCGAGCGGCTCGGCGTGCGCTTCGAGTTGGTCGTGCCCGCGGGTGTCAG
CGGGCGCGTCGCGAACACGCCGCCCGCGCGCACCCACGCGCCGACCGCGT
ACGGCCAGGAGCTCTACCACCTGGAGCCGGTCGGCGACGTCAGCGCCGAG
CTCGCCAGCGCGGCCGAGGCCGGCGCCGCG
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