mRNA_M-pyrifera_M_contig81803.19144.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81803.19144.1
Unique NamemRNA_M-pyrifera_M_contig81803.19144.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Match: A0A6I3WYB3_9ACTN (Endopeptidase La n=2 Tax=root TaxID=1 RepID=A0A6I3WYB3_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 1.870e-14
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSDEELA 162
            GELTGG +VA+TGTI +DG VGAIGG+ QKA AVR++G  YF+VPA+QSD E+A
Sbjct:  311 GELTGGQRVAVTGTIDVDGKVGAIGGLAQKASAVRQTGTKYFLVPAAQSDAEIA 364
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BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Match: UPI001414EF96 (PDZ domain-containing protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=UPI001414EF96)

HSP 1 Score: 76.6 bits (187), Expect = 2.620e-14
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSDEEL 159
            GELTGG +VA+TGTI +DG+VGAIGG+ QKA AV ++G D FIVPASQSDE++
Sbjct:  327 GELTGGGRVAVTGTIELDGSVGAIGGLRQKASAVAQTGVDLFIVPASQSDEDI 379
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BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Match: A0A4R7HWJ9_9ACTN (Endopeptidase La n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A4R7HWJ9_9ACTN)

HSP 1 Score: 76.6 bits (187), Expect = 2.700e-14
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSDEEL 159
            GELTGG +VA+TGTI +DG+VGAIGG+ QKA AV ++G D FIVPASQSDE++
Sbjct:  342 GELTGGGRVAVTGTIELDGSVGAIGGLRQKASAVAQTGVDLFIVPASQSDEDI 394
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BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Match: A0A7K0VN38_9ACTN (Endopeptidase La n=2 Tax=root TaxID=1 RepID=A0A7K0VN38_9ACTN)

HSP 1 Score: 75.9 bits (185), Expect = 4.830e-14
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSDEELA 162
            GELTGG +VA+TGTI +DG VG IGG+ QKA AV+++G  YF+VPASQSD+E+A
Sbjct:  311 GELTGGNRVAVTGTIDVDGKVGPIGGLAQKASAVKQTGTKYFLVPASQSDDEIA 364
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BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Match: UPI0013C471E1 (PDZ domain-containing protein n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI0013C471E1)

HSP 1 Score: 75.9 bits (185), Expect = 5.030e-14
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSDEELA 162
            G+L GG  VA+TG+IGI G VGAIGG+ QKA AVR++G DYFIVPA+QSD++LA
Sbjct:  337 GDLLGGLDVAVTGSIGIQGNVGAIGGLAQKASAVRQAGLDYFIVPATQSDDDLA 390
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BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Match: A0A812PXX1_9DINO (YlbL protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PXX1_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 1.070e-13
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSDEEL 159
            GELTGG +VA+TGTI +DG+VGAIGG+ QKA AV ++G + FIVPASQSDE++
Sbjct:  342 GELTGGGRVAVTGTIELDGSVGAIGGLRQKASAVAQTGVELFIVPASQSDEDI 394
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BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Match: A0A7K1B0P0_9ACTN (PDZ domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1B0P0_9ACTN)

HSP 1 Score: 73.6 bits (179), Expect = 3.530e-13
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSDEELAI 165
            GELTGG +VA+TGTI IDGTVG IGG+ QK  AVR+ GAD F+VPA Q ++++A+
Sbjct:  398 GELTGGRRVAVTGTIRIDGTVGGIGGLAQKVSAVRQLGADVFLVPAEQGEQDIAL 452
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BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Match: A0A6L6CT76_9ACTN (Lon proteolytic domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6L6CT76_9ACTN)

HSP 1 Score: 71.6 bits (174), Expect = 1.570e-12
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSDEELA 162
            G+L GG KV  TGTI  D TVGAIG ++QKAVAV+  GAD FI+PASQSDEE+A
Sbjct:  323 GDLMGGKKVVATGTISEDETVGAIGALQQKAVAVKAIGADIFIIPASQSDEEIA 376
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BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Match: A0A7K0LAY8_9ACTN (Lon proteolytic domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A7K0LAY8_9ACTN)

HSP 1 Score: 71.6 bits (174), Expect = 1.670e-12
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSDEELA 162
            G+L GG KV  TGTI  D TVGAIG ++QKAVAV+  GAD FI+PASQSDEE+A
Sbjct:  394 GDLMGGKKVVATGTISEDETVGAIGALQQKAVAVKAIGADVFIIPASQSDEEIA 447
[Close]
BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Match: A0A2D8HRX4_9ACTN (Lon proteolytic domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8HRX4_9ACTN)

HSP 1 Score: 68.6 bits (166), Expect = 1.820e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSDEELA 162
            GELTGG +VA+TGTI +DG+VGAIGG+ QKA AV ++G +  +VP  Q DE++A
Sbjct:  323 GELTGGKRVAVTGTIDLDGSVGAIGGLTQKASAVEQAGVELLLVPTRQGDEQIA 376
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81803.19144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3WYB3_9ACTN1.870e-1468.52Endopeptidase La n=2 Tax=root TaxID=1 RepID=A0A6I3... [more]
UPI001414EF962.620e-1469.81PDZ domain-containing protein n=1 Tax=Ilumatobacte... [more]
A0A4R7HWJ9_9ACTN2.700e-1469.81Endopeptidase La n=2 Tax=Acidimicrobiales TaxID=84... [more]
A0A7K0VN38_9ACTN4.830e-1466.67Endopeptidase La n=2 Tax=root TaxID=1 RepID=A0A7K0... [more]
UPI0013C471E15.030e-1468.52PDZ domain-containing protein n=1 Tax=Desertimonas... [more]
A0A812PXX1_9DINO1.070e-1367.92YlbL protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7K1B0P0_9ACTN3.530e-1363.64PDZ domain-containing protein n=2 Tax=root TaxID=1... [more]
A0A6L6CT76_9ACTN1.570e-1268.52Lon proteolytic domain-containing protein n=2 Tax=... [more]
A0A7K0LAY8_9ACTN1.670e-1268.52Lon proteolytic domain-containing protein n=3 Tax=... [more]
A0A2D8HRX4_9ACTN1.820e-1159.26Lon proteolytic domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81803contigM-pyrifera_M_contig81803:3..293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.9
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog1313172.YM304_05080
Preferred namelon
KEGG koko:K07177
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the peptidase S16 family
EggNOG OGs2GJDD@201174,COG3480@1,COG3480@2
COG Functional cat.T
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01002
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.4778035-CDS-M-pyrifera_M_contig81803:2..2931622816725.4778035-CDS-M-pyrifera_M_contig81803:2..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81803 3..293 +
1692278142.508942-CDS-M-pyrifera_M_contig81803:2..2931692278142.508942-CDS-M-pyrifera_M_contig81803:2..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81803 3..293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81803.19144.1prot_M-pyrifera_M_contig81803.19144.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81803 3..293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81803.19144.1

>prot_M-pyrifera_M_contig81803.19144.1 ID=prot_M-pyrifera_M_contig81803.19144.1|Name=mRNA_M-pyrifera_M_contig81803.19144.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
GELTGGAKVAITGTIGIDGTVGAIGGIEQKAVAVRESGADYFIVPASQSD
EELAIVRERIGDVEVIPVENLDQALEALGRIGGDVEAVEEFAMAQS*
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mRNA from alignment at M-pyrifera_M_contig81803:3..293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81803.19144.1 ID=mRNA_M-pyrifera_M_contig81803.19144.1|Name=mRNA_M-pyrifera_M_contig81803.19144.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig81803:3..293+ (Macrocystis pyrifera P11B4 male)
GGTGAACTCACCGGCGGGGCGAAGGTTGCGATCACCGGCACCATCGGGAT
CGACGGGACCGTCGGCGCCATCGGGGGCATCGAGCAGAAAGCCGTCGCCG
TGCGTGAGTCGGGGGCCGACTACTTCATCGTGCCTGCGAGCCAGAGCGAC
GAAGAGCTCGCCATCGTGCGGGAACGCATCGGCGACGTCGAGGTGATCCC
GGTCGAGAATCTCGATCAGGCGCTCGAGGCACTGGGTCGAATCGGCGGCG
ATGTCGAGGCCGTCGAAGAGTTTGCGATGGCTCAGAGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81803:3..293+

>mRNA_M-pyrifera_M_contig81803.19144.1 ID=mRNA_M-pyrifera_M_contig81803.19144.1|Name=mRNA_M-pyrifera_M_contig81803.19144.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig81803:3..293+ (Macrocystis pyrifera P11B4 male)
GGTGAACTCACCGGCGGGGCGAAGGTTGCGATCACCGGCACCATCGGGAT
CGACGGGACCGTCGGCGCCATCGGGGGCATCGAGCAGAAAGCCGTCGCCG
TGCGTGAGTCGGGGGCCGACTACTTCATCGTGCCTGCGAGCCAGAGCGAC
GAAGAGCTCGCCATCGTGCGGGAACGCATCGGCGACGTCGAGGTGATCCC
GGTCGAGAATCTCGATCAGGCGCTCGAGGCACTGGGTCGAATCGGCGGCG
ATGTCGAGGCCGTCGAAGAGTTTGCGATGGCTCAGAGCTGAGGTGAACTC
ACCGGCGGGGCGAAGGTTGCGATCACCGGCACCATCGGGATCGACGGGAC
CGTCGGCGCCATCGGGGGCATCGAGCAGAAAGCCGTCGCCGTGCGTGAGT
CGGGGGCCGACTACTTCATCGTGCCTGCGAGCCAGAGCGACGAAGAGCTC
GCCATCGTGCGGGAACGCATCGGCGACGTCGAGGTGATCCCGGTCGAGAA
TCTCGATCAGGCGCTCGAGGCACTGGGTCGAATCGGCGGCGATGTCGAGG
CCGTCGAAGAGTTTGCGATGGCTCAGAGCTGA
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