mRNA_M-pyrifera_M_contig81717.19134.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81717.19134.1
Unique NamemRNA_M-pyrifera_M_contig81717.19134.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Match: UPI00096AFD85 (probable cardiolipin synthase (CMP-forming) n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096AFD85)

HSP 1 Score: 68.9 bits (167), Expect = 2.570e-11
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:    1 FLTMGYLGMIPAWLTGLVVARDVGLVAGGMVLRARTKSPK---DGFFDATSGSAPKVTPSTISKLNTALQLSLVSLTLVHAAFPSI-LPALLPQTLSLLHYTTASTTLGSWIHYTIFPN 345
            FLT+ Y  +IP  LTG++VARDV LVA G V+R R+  P      +FD T  +A ++ P+ ISK+NT +QL LV  TL    F  +  PAL       L Y T +TT+ + + Y +  N
Sbjct:  195 FLTLTYADLIPIALTGIIVARDVALVAAGFVIRYRSLPPPRTLSRYFDVTHATA-QLAPTFISKVNTVVQLVLVGSTLAAPVFQYVGHPAL-----ECLWYVTGTTTVAAALSYILSKN 307
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BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Match: UPI0006C9E428 (probable cardiolipin synthase (CMP-forming) isoform X1 n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C9E428)

HSP 1 Score: 68.6 bits (166), Expect = 2.710e-11
Identity = 50/126 (39.68%), Postives = 69/126 (54.76%), Query Frame = 1 
Query:    1 FLTMGYLGMIPAWLTGLVVARDVGLVAGGMVLRARTKSPKDG---FFDATSGSAPKVTPSTISKLNTALQLSLVSLTLVHAAFPSILPALLPQTLSLLHYTTASTTLGSWIHYTIFPNQVWQDSKK 369
            FL++ ++G+IP WLT LV+ RDV LVA    +R R+  P      +FDAT  +  ++ P+ ISK+NT +QL LV+ TL    F  +   LL      L Y TA TT+   + Y I  N     SKK
Sbjct:  156 FLSLTWVGLIPVWLTCLVIVRDVTLVAAASYIRYRSLPPPKTLTRYFDATHATV-QLAPTMISKINTGVQLMLVAGTLAAPVFNFVDHPLLQG----LCYLTAFTTIAGGVSYIISKNTYKMLSKK 276
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BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Match: UPI001C4394D7 (probable cardiolipin synthase (CMP-forming) isoform X4 n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C4394D7)

HSP 1 Score: 67.4 bits (163), Expect = 5.820e-11
Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:    1 FLTMGYLGMIPAWLTGLVVARDVGLVAGGMVLRARTKSPK---DGFFDATSGSAPKVTPSTISKLNTALQLSLVSLTLVHAAFPSILPALLPQTLSLLHYTTASTTLGSWIHY 330
            FL++ Y+G+IP  LTGL++ RDV ++ G   +R ++  P      +FDAT  +A K+ P+T+SK+NTA+QLSL++ +L    F      LL      + + TA+TTL S I Y
Sbjct:  132 FLSLTYVGLIPLPLTGLIIYRDVLIIGGASYVRYKSLPPPRTVTRYFDATHATA-KLAPTTLSKVNTAIQLSLITASLAAPVFCFTDHYLLKA----IWWVTAATTLSSGISY 239
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BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Match: A0A6P6XLA3_DERPT (probable cardiolipin synthase (CMP-forming) n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6XLA3_DERPT)

HSP 1 Score: 67.4 bits (163), Expect = 7.660e-11
Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:    4 LTMGYLGMIPAWLTGLVVARDVGLVAGGMVLRARTKSPK---DGFFDATSGSAPKVTPSTISKLNTALQLSLVSLTLVHAAFPSI---LPALLPQTLSLLHYTTASTTLGSWIHY 330
            LT+ Y+ MIP WLT L+  RD  ++ GG  LR R+  P    + FF+ ++ ++ + +P+ ISKLNT  QL+LVS TL    F  +   L  LLP     L + T  TTL S I Y
Sbjct:  174 LTLTYVNMIPIWLTLLIFLRDFLIILGGFWLRYRSLQPPITFERFFNLSTFTSERFSPTFISKLNTGFQLTLVSFTLASPVFSDLFRYLDFLLPS----LQWITGVTTLWSGILY 284
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BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Match: A0A423TU74_PENVA (Uncharacterized protein n=4 Tax=Penaeus TaxID=133894 RepID=A0A423TU74_PENVA)

HSP 1 Score: 67.8 bits (164), Expect = 8.550e-11
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:    1 FLTMGYLGMIPAWLTGLVVARDVGLVAGGMVLRARTKSPK---DGFFDATSGSAPKVTPSTISKLNTALQLSLVSLTLVHAAFPSILPALLPQTLSLLHYTTASTTLGSWIHYTIFPNQVWQDSKK 369
            FL++ Y+G+IP  LTGL++ RDV ++ G   +R ++  P      +FDAT  +A ++ P+TISK+NTA+QLSL++ +L    F      LL      L + TA+TTL S I Y IF    ++  +K
Sbjct:  262 FLSLTYVGLIPLPLTGLIIYRDVLIIGGASYVRYKSLPPPKTISRYFDATHATA-QLAPTTISKVNTAIQLSLITASLAAPVFSFSDHYLLTG----LCWVTAATTLSSGISY-IFSRNTYKILEK 381
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BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Match: UPI001C48A225 (cardiolipin synthase (CMP-forming)-like isoform X1 n=2 Tax=Homarus americanus TaxID=6706 RepID=UPI001C48A225)

HSP 1 Score: 67.4 bits (163), Expect = 1.110e-10
Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:    1 FLTMGYLGMIPAWLTGLVVARDVGLVAGGMVLRARTKSPK---DGFFDATSGSAPKVTPSTISKLNTALQLSLVSLTLVHAAFPSILPALLPQTLSLLHYTTASTTLGSWIHY 330
            FL++ Y+G+IP  LTGL++ RDV ++ G   +R ++  P      +FDAT  +A K+ P+T+SK+NTA+QLSL++ +L    F      LL      + + TA+TTL S I Y
Sbjct:  239 FLSLTYVGLIPLPLTGLIIYRDVLIIGGASYVRYKSLPPPRTVTRYFDATHATA-KLAPTTLSKVNTAIQLSLITASLAAPVFCFTDHYLLKA----IWWVTAATTLSSGISY 346
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BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Match: A0A834XRM8_9HYME (Uncharacterized protein n=3 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A834XRM8_9HYME)

HSP 1 Score: 66.2 bits (160), Expect = 1.890e-10
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 1 
Query:    1 FLTMGYLGMIPAWLTGLVVARDVGLVAGGMVLRART-KSPKD--GFFDATSGSAPKVTPSTISKLNTALQLSLVSLTLVHAAFPSILPALLPQTLSLLHYTTASTTLGSWIHYTIFPNQVWQDSKK 369
            FL++ ++ +IP  LT LVV+RD+GL+AG   +R R+   PK    +FDAT  +  ++ P+ ISKLNTA+QLSLV+ TL    F  I   +L      L Y TA+TT+   + Y +  N     +KK
Sbjct:  156 FLSLAWVELIPMSLTCLVVSRDIGLIAGASYIRYRSLPEPKTLARYFDATHATV-QLAPTFISKLNTAVQLSLVAGTLAAPVFNFIDHPVLNG----LCYLTAATTIAGGVSYLLSKNTYKYLTKK 276
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BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Match: UPI001603DED5 (cardiolipin synthase (CMP-forming)-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001603DED5)

HSP 1 Score: 66.2 bits (160), Expect = 2.860e-10
Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 1 
Query:    1 FLTMGYLGMIPAWLTGLVVARDVGLVAGGMVLRARTKSPKDGF---FDATSGSAPKVTPSTISKLNTALQLSLVSLTLVHAAFPSILPALLPQTLSLLHYTTASTTLGSWIHYTIF 339
            FL++ Y+G+IP  LT L++ RD+GL+  G  +R +T  P   F   FDAT  +A ++ P+ ISK+NTA+QL +V+ +L       +   LL      L Y TA TT+ S + Y ++
Sbjct:  242 FLSLTYVGLIPVPLTLLIIGRDIGLILAGFYVRYKTLPPPVTFSRYFDATHATA-QLKPTFISKVNTAVQLGMVTFSLAAPVLGYVEHPLLQA----LWYLTAGTTIMSGLSYLVY 352
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BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Match: A0A6P7FG03_DIAVI (probable cardiolipin synthase (CMP-forming) n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FG03_DIAVI)

HSP 1 Score: 65.9 bits (159), Expect = 3.280e-10
Identity = 48/119 (40.34%), Postives = 69/119 (57.98%), Query Frame = 1 
Query:    1 FLTMGYLGMIPAWLTGLVVARDVGLVAGGMVLRARTKSPK---DGFFDATSGSAPKVTPSTISKLNTALQLSLVSLTLVHAAFPSI-LPALLPQTLSLLHYTTASTTLGSWIHYTIFPN 345
            FLT+ Y+ +IP  LTGL++ARDV LVA G V+R  +  P      +FD T  +A ++ P+ ISK+NTA+Q+ LV  TL    F  +  PAL       L Y T +TT+ + + Y +  N
Sbjct:  194 FLTLTYVDLIPLVLTGLIIARDVLLVAAGFVIRYLSLPPPRTLSRYFDMTHATA-QLAPTFISKVNTAVQILLVGSTLAAPVFNYVGHPAL-----EALWYITGTTTVAAGLSYLLSKN 306
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BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Match: A0A1B6BYE9_9HEMI (Uncharacterized protein n=2 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6BYE9_9HEMI)

HSP 1 Score: 65.9 bits (159), Expect = 3.800e-10
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:    1 FLTMGYLGMIPAWLTGLVVARDVGLVAGGMVLRARTKSPK---DGFFDATSGSAPKVTPSTISKLNTALQLSLVSLTLVHAAFPSILPALLPQTLSLLHYTTASTTLGSWIHYTIFPN 345
            FL++ Y  +IP +LT LV+ RD+ LVA G  +R ++  P      +FDAT  +A ++ P+TISK+NT +QL  V+  L    F  +   +L     ++ Y TASTT+ S   Y I  N
Sbjct:  233 FLSLTYASIIPVYLTSLVIVRDIFLVAAGFYIRYQSLPPPRTLSRYFDATHATA-QLAPTTISKVNTMVQLGTVACALAAPVFGYLDHPIL----QVMWYVTASTTIASAASYIISKN 345
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81717.19134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00096AFD852.570e-1141.18probable cardiolipin synthase (CMP-forming) n=1 Ta... [more]
UPI0006C9E4282.710e-1139.68probable cardiolipin synthase (CMP-forming) isofor... [more]
UPI001C4394D75.820e-1139.82probable cardiolipin synthase (CMP-forming) isofor... [more]
A0A6P6XLA3_DERPT7.660e-1140.87probable cardiolipin synthase (CMP-forming) n=1 Ta... [more]
A0A423TU74_PENVA8.550e-1138.89Uncharacterized protein n=4 Tax=Penaeus TaxID=1338... [more]
UPI001C48A2251.110e-1039.82cardiolipin synthase (CMP-forming)-like isoform X1... [more]
A0A834XRM8_9HYME1.890e-1040.48Uncharacterized protein n=3 Tax=Aphidius gifuensis... [more]
UPI001603DED52.860e-1037.93cardiolipin synthase (CMP-forming)-like n=1 Tax=Br... [more]
A0A6P7FG03_DIAVI3.280e-1040.34probable cardiolipin synthase (CMP-forming) n=1 Ta... [more]
A0A1B6BYE9_9HEMI3.800e-1038.14Uncharacterized protein n=2 Tax=Clastoptera arizon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81717contigM-pyrifera_M_contig81717:2..370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog4787.PITG_17041T0
Preferred nameCRLS1
KEGG rclassRC00002,RC00017
KEGG koko:K02950,ko:K08744,ko:K10737
KEGG ReactionR02030
KEGG Pathwayko00564,ko01100,ko03010,map00564,map01100,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categorysignal peptide
GOsGO:0000002,GO:0001101,GO:0003674,GO:0003824,GO:0003841,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006163,GO:0006164,GO:0006605,GO:0006612,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006873,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0008104,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016780,GO:0016787,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019866,GO:0030145,GO:0030572,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032048,GO:0032049,GO:0033036,GO:0033993,GO:0034613,GO:0034641,GO:0034654,GO:0036148,GO:0042127,GO:0042171,GO:0042221,GO:0042391,GO:0042493,GO:0042592,GO:0042886,GO:0043167,GO:0043169,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043337,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045184,GO:0046034,GO:0046390,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0046683,GO:0046872,GO:0046907,GO:0046914,GO:0047144,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051881,GO:0055082,GO:0055086,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0071617,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072521,GO:0072522,GO:0072657,GO:0090150,GO:0090407,GO:0097066,GO:0097068,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901700,GO:1904386,GO:1905711
EggNOG free text desc.CDP-alcohol phosphatidyltransferase
EggNOG OGs3QCXD@4776,COG0558@1,KOG1617@2759
EC2.7.8.41,3.6.4.12
COG Functional cat.I
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03032
Exons1
Model size369
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.8756645-UTR-M-pyrifera_M_contig81717:1..101622816724.8756645-UTR-M-pyrifera_M_contig81717:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81717 2..10 +
1692278142.0828838-UTR-M-pyrifera_M_contig81717:1..101692278142.0828838-UTR-M-pyrifera_M_contig81717:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81717 2..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.886803-CDS-M-pyrifera_M_contig81717:10..3701622816724.886803-CDS-M-pyrifera_M_contig81717:10..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81717 11..370 +
1692278142.0996103-CDS-M-pyrifera_M_contig81717:10..3701692278142.0996103-CDS-M-pyrifera_M_contig81717:10..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81717 11..370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81717.19134.1prot_M-pyrifera_M_contig81717.19134.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81717 11..370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81717.19134.1

>prot_M-pyrifera_M_contig81717.19134.1 ID=prot_M-pyrifera_M_contig81717.19134.1|Name=mRNA_M-pyrifera_M_contig81717.19134.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MGYLGMIPAWLTGLVVARDVGLVAGGMVLRARTKSPKDGFFDATSGSAPK
VTPSTISKLNTALQLSLVSLTLVHAAFPSILPALLPQTLSLLHYTTASTT
LGSWIHYTIFPNQVWQDSKK
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mRNA from alignment at M-pyrifera_M_contig81717:2..370+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81717.19134.1 ID=mRNA_M-pyrifera_M_contig81717.19134.1|Name=mRNA_M-pyrifera_M_contig81717.19134.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig81717:2..370+ (Macrocystis pyrifera P11B4 male)
TTCCTGACGATGGGGTATTTGGGGATGATTCCAGCCTGGTTGACAGGGTT
AGTGGTTGCACGTGATGTAGGGTTGGTGGCTGGAGGTATGGTGCTTCGTG
CTCGCACAAAGTCCCCGAAAGATGGGTTCTTTGATGCCACTTCTGGCTCT
GCTCCCAAAGTCACCCCATCCACAATATCCAAGCTCAACACTGCCCTCCA
ACTCTCGCTCGTCTCTCTCACCCTTGTCCACGCAGCGTTCCCGTCTATCC
TTCCAGCCTTGCTCCCACAAACCCTCTCCCTCCTGCATTATACCACAGCA
TCTACAACCCTCGGCAGCTGGATTCACTACACAATCTTCCCAAACCAAGT
CTGGCAAGACAGCAAGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81717:2..370+

>mRNA_M-pyrifera_M_contig81717.19134.1 ID=mRNA_M-pyrifera_M_contig81717.19134.1|Name=mRNA_M-pyrifera_M_contig81717.19134.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig81717:2..370+ (Macrocystis pyrifera P11B4 male)
ATGGGGTATTTGGGGATGATTCCAGCCTGGTTGACAGGGTTAGTGGTTGC
ACGTGATGTAGGGTTGGTGGCTGGAGGTATGGTGCTTCGTGCTCGCACAA
AGTCCCCGAAAGATGGGTTCTTTGATGCCACTTCTGGCTCTGCTCCCAAA
GTCACCCCATCCACAATATCCAAGCTCAACACTGCCCTCCAACTCTCGCT
CGTCTCTCTCACCCTTGTCCACGCAGCGTTCCCGTCTATCCTTCCAGCCT
TGCTCCCACAAACCCTCTCCCTCCTGCATTATACCACAGCATCTACAACC
CTCGGCAGCTGGATTCACTACACAATCTTCCCAAACCAAGTCTGGCAAGA
CAGCAAGAAAATGGGGTATTTGGGGATGATTCCAGCCTGGTTGACAGGGT
TAGTGGTTGCACGTGATGTAGGGTTGGTGGCTGGAGGTATGGTGCTTCGT
GCTCGCACAAAGTCCCCGAAAGATGGGTTCTTTGATGCCACTTCTGGCTC
TGCTCCCAAAGTCACCCCATCCACAATATCCAAGCTCAACACTGCCCTCC
AACTCTCGCTCGTCTCTCTCACCCTTGTCCACGCAGCGTTCCCGTCTATC
CTTCCAGCCTTGCTCCCACAAACCCTCTCCCTCCTGCATTATACCACAGC
ATCTACAACCCTCGGCAGCTGGATTCACTACACAATCTTCCCAAACCAAG
TCTGGCAAGACAGCAAGAAA
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