mRNA_M-pyrifera_M_contig81704.19127.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81704.19127.1
Unique NamemRNA_M-pyrifera_M_contig81704.19127.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81704.19127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81704contigM-pyrifera_M_contig81704:480..797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue7.3e-07
Seed eggNOG ortholog157072.XP_008861182.1
Preferred nameDAP3
KEGG koko:K06072,ko:K17408
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006915,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0012501,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0023052,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0097190,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG3928@1,KOG3928@2759
EC1.14.99.29
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko01000,ko03011,ko03029
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.636572-CDS-M-pyrifera_M_contig81704:479..7971622816724.636572-CDS-M-pyrifera_M_contig81704:479..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81704 480..797 +
1692278141.9337342-CDS-M-pyrifera_M_contig81704:479..7971692278141.9337342-CDS-M-pyrifera_M_contig81704:479..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81704 480..797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81704.19127.1prot_M-pyrifera_M_contig81704.19127.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81704 480..797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81704.19127.1

>prot_M-pyrifera_M_contig81704.19127.1 ID=prot_M-pyrifera_M_contig81704.19127.1|Name=mRNA_M-pyrifera_M_contig81704.19127.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
ASVPAPATPFSPDTPAMWPARLLHGPRGIGKSCVLTYVLQYARTHGWLVL
HIPDAFWAMRDGQVLTESATRPGFVDQNDIAGAVLGAMEAAHGDLLHTLP
QRRAYP
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mRNA from alignment at M-pyrifera_M_contig81704:480..797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81704.19127.1 ID=mRNA_M-pyrifera_M_contig81704.19127.1|Name=mRNA_M-pyrifera_M_contig81704.19127.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig81704:480..797+ (Macrocystis pyrifera P11B4 male)
GCCAGCGTTCCTGCACCTGCGACACCCTTCTCCCCAGACACCCCGGCCAT
GTGGCCCGCGAGGCTGTTGCACGGGCCGCGTGGGATTGGGAAAAGTTGCG
TGTTGACGTACGTGCTGCAATACGCGCGCACGCACGGCTGGCTGGTGCTG
CACATTCCGGACGCCTTCTGGGCGATGCGGGACGGGCAAGTGTTGACGGA
ATCCGCCACGAGGCCCGGATTTGTGGACCAGAACGACATTGCAGGTGCCG
TTTTGGGGGCCATGGAAGCTGCGCACGGCGACCTCCTGCACACGCTGCCC
CAGCGCAGGGCCTACCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81704:480..797+

>mRNA_M-pyrifera_M_contig81704.19127.1 ID=mRNA_M-pyrifera_M_contig81704.19127.1|Name=mRNA_M-pyrifera_M_contig81704.19127.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig81704:480..797+ (Macrocystis pyrifera P11B4 male)
GCCAGCGTTCCTGCACCTGCGACACCCTTCTCCCCAGACACCCCGGCCAT
GTGGCCCGCGAGGCTGTTGCACGGGCCGCGTGGGATTGGGAAAAGTTGCG
TGTTGACGTACGTGCTGCAATACGCGCGCACGCACGGCTGGCTGGTGCTG
CACATTCCGGACGCCTTCTGGGCGATGCGGGACGGGCAAGTGTTGACGGA
ATCCGCCACGAGGCCCGGATTTGTGGACCAGAACGACATTGCAGGTGCCG
TTTTGGGGGCCATGGAAGCTGCGCACGGCGACCTCCTGCACACGCTGCCC
CAGCGCAGGGCCTACCCGGCCAGCGTTCCTGCACCTGCGACACCCTTCTC
CCCAGACACCCCGGCCATGTGGCCCGCGAGGCTGTTGCACGGGCCGCGTG
GGATTGGGAAAAGTTGCGTGTTGACGTACGTGCTGCAATACGCGCGCACG
CACGGCTGGCTGGTGCTGCACATTCCGGACGCCTTCTGGGCGATGCGGGA
CGGGCAAGTGTTGACGGAATCCGCCACGAGGCCCGGATTTGTGGACCAGA
ACGACATTGCAGGTGCCGTTTTGGGGGCCATGGAAGCTGCGCACGGCGAC
CTCCTGCACACGCTGCCCCAGCGCAGGGCCTACCCG
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