mRNA_M-pyrifera_M_contig81701.19125.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81701.19125.1
Unique NamemRNA_M-pyrifera_M_contig81701.19125.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Match: A0A2D6HDG3_9BACT (Peptide ABC transporter permease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HDG3_9BACT)

HSP 1 Score: 153 bits (386), Expect = 8.760e-44
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    4 GELAFEDGYWELSWLDRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRIVWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL 300
            GE  FE  YWELS  D  LV  R ++FG WQTG+W+GTD KGRDI+SRIVWGSRTSI+VAL ATLCSL+IGVTYG+ SGLMGGR+DN MMRVVD+LYS+
Sbjct:   42 GEGGFEPDYWELSAADELLVGARCALFGDWQTGHWLGTDGKGRDILSRIVWGSRTSILVALAATLCSLVIGVTYGALSGLMGGRVDNLMMRVVDVLYSI 140
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BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Match: A0A2E5X703_9BACT (Peptide ABC transporter permease n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X703_9BACT)

HSP 1 Score: 149 bits (375), Expect = 1.130e-41
Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:   28 YWELSWLDRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRIVWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL 300
            YWELS LD   V +R +IF  WQTG+WMG DSKGRDI+SRIVWGSRTSIIVALIATLCSL IGVTYG+FSGL GGRIDN MMR+VD+LYS+
Sbjct:   97 YWELSTLDNAAVDLRVAIFDDWQTGSWMGRDSKGRDILSRIVWGSRTSIIVALIATLCSLAIGVTYGAFSGLSGGRIDNLMMRIVDVLYSV 187
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BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Match: A0A523PA27_9BACT (ABC transporter permease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PA27_9BACT)

HSP 1 Score: 148 bits (373), Expect = 2.110e-41
Identity = 67/99 (67.68%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    4 GELAFEDGYWELSWLDRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRIVWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL 300
            G   +E  YW+L+ LD  +VS+R S+FG WQTG WMG D  GRD+MSRI+WGSRTSI+VA+ ATLCSL+IGVTYG+FSGLMGGR+DN MMR+VD+LYS+
Sbjct:   86 GNHDYEPEYWDLNALDNGMVSLRQSVFGDWQTGAWMGRDGTGRDLMSRIIWGSRTSILVAIAATLCSLVIGVTYGAFSGLMGGRVDNLMMRIVDVLYSV 184
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BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Match: A0A800G0J1_9BACT (ABC transporter permease n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G0J1_9BACT)

HSP 1 Score: 145 bits (367), Expect = 2.300e-40
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    7 ELAFEDGYWELSWLDRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRIVWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL 300
            E   +D YW+LS LD+ LV  R  IFG WQTG+W+GTD  GRD++SR+VWGSRTSI+VAL AT CSLLIGV YG+FSGL GGR+DN MMRVVD+LYS+
Sbjct:  103 ERNIQDSYWDLSALDQTLVHARVGIFGRWQTGHWLGTDHLGRDLLSRLVWGSRTSILVALAATFCSLLIGVVYGAFSGLAGGRVDNLMMRVVDVLYSI 200
[Close]
BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Match: A0A2D5XP92_9BACT (Peptide ABC transporter permease n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XP92_9BACT)

HSP 1 Score: 145 bits (366), Expect = 3.360e-40
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:   19 EDGYWELSWLDRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRIVWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL 300
            E  YWELS LD  L+S+R  IFG WQTG+W+GTD  GRD+++RIVWGSRTSI+V+L A LCSLLIGV YGSFSGL GGRIDN MMR+VDILYS+
Sbjct:  109 EKDYWELSGLDHGLISLRRGIFGSWQTGHWLGTDHLGRDLLARIVWGSRTSILVSLAAALCSLLIGVFYGSFSGLAGGRIDNLMMRIVDILYSI 202
[Close]
BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Match: A0A518EW14_9BACT (Oligopeptide transport system permease protein OppC n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EW14_9BACT)

HSP 1 Score: 147 bits (372), Expect = 1.310e-39
Identity = 72/102 (70.59%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:    7 ELAFEDGYWELSWL----DRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRIVWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL 300
            E   E GYW    L    D  L+  R  +FGLWQTGNWMGTDS+GRD+MSRIVWGSRTSIIV LIA+LCSLLIGV YG+FSGLMGGRIDN MMR+VD+LYS+
Sbjct:  340 EARHESGYWPFKGLVGRFDDLLLHARVHVFGLWQTGNWMGTDSQGRDLMSRIVWGSRTSIIVGLIASLCSLLIGVLYGAFSGLMGGRIDNLMMRIVDVLYSI 441
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BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Match: A0A518BI55_9BACT (Oligopeptide transport system permease protein OppC n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BI55_9BACT)

HSP 1 Score: 143 bits (360), Expect = 8.130e-38
Identity = 66/98 (67.35%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:    7 ELAFEDGYWELSWLDRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRIVWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL 300
            E++  DG W+L+ LDR LV +R  +FGLWQTG  +GTD+KGRD+++RIVWGSR SI V+L+ATLCSLLIGVTYG+FSGL+GGR DN MMR+VD+LYS+
Sbjct:  379 EMSHLDGIWDLNPLDRALVWVRTKVFGLWQTGPLLGTDNKGRDLLARIVWGSRISIQVSLVATLCSLLIGVTYGAFSGLVGGRTDNLMMRIVDVLYSV 476
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BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Match: A0A7C8D1L5_9BACT (ABC transporter permease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8D1L5_9BACT)

HSP 1 Score: 134 bits (336), Expect = 6.390e-36
Identity = 62/99 (62.63%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    4 GELAFEDGYWELSWLDRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRIVWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL 300
            G   F   YWELS LD+ +V  R +IF  WQT  W+GTD+KGRDI+SRIVWGSRTS++VAL A LCSL IGVTYG+ +G +GG +DN MMR+VD+LYS+
Sbjct:   85 GRGGFSPEYWELSGLDQAMVRGRVAIFDDWQTAAWLGTDAKGRDILSRIVWGSRTSMLVALAAALCSLAIGVTYGALAGYLGGAVDNLMMRIVDVLYSI 183
[Close]
BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Match: A0A7C2ALL1_9BACT (ABC transporter permease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2ALL1_9BACT)

HSP 1 Score: 131 bits (329), Expect = 1.060e-34
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:   16 FEDGYWELSWLDRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRIVWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL 300
            FED  WE    DR L++ R  +FG +QTG+W+GTDSKGRD+++RI+WGSR S++VAL A LCSLLIGVTYG+FSG MGG +DN MMR VD+LYS+
Sbjct:  101 FEDA-WEPGGFDRALIAARVKLFGTYQTGHWLGTDSKGRDLLARILWGSRVSLLVALSAGLCSLLIGVTYGAFSGYMGGWVDNLMMRFVDVLYSV 194
[Close]
BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Match: A0A7Y4T1K7_9BACT (ABC transporter permease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4T1K7_9BACT)

HSP 1 Score: 108 bits (270), Expect = 4.760e-26
Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:   19 EDGYWELSWLDRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRIVWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL 300
            EDGY  L+  DR L++ R + FG +Q G W+GTD+KGRD+++R V+GSR S++VAL   L S+++GV YG+ +G  GGRID  MMR+VD+LYS+
Sbjct:  118 EDGYGRLAHFDRWLLARRFATFGFYQLGPWLGTDAKGRDLLARCVFGSRVSLLVALAGALVSVVVGVGYGALAGYFGGRIDERMMRLVDVLYSI 211
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81701.19125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6HDG3_9BACT8.760e-4472.73Peptide ABC transporter permease n=1 Tax=Planctomy... [more]
A0A2E5X703_9BACT1.130e-4178.02Peptide ABC transporter permease n=2 Tax=Planctomy... [more]
A0A523PA27_9BACT2.110e-4167.68ABC transporter permease n=1 Tax=Planctomycetes ba... [more]
A0A800G0J1_9BACT2.300e-4068.37ABC transporter permease n=2 Tax=Planctomycetes ba... [more]
A0A2D5XP92_9BACT3.360e-4072.34Peptide ABC transporter permease n=2 Tax=Planctomy... [more]
A0A518EW14_9BACT1.310e-3970.59Oligopeptide transport system permease protein Opp... [more]
A0A518BI55_9BACT8.130e-3867.35Oligopeptide transport system permease protein Opp... [more]
A0A7C8D1L5_9BACT6.390e-3662.63ABC transporter permease n=1 Tax=Planctomycetes ba... [more]
A0A7C2ALL1_9BACT1.060e-3464.21ABC transporter permease n=1 Tax=Planctomycetes ba... [more]
A0A7Y4T1K7_9BACT4.760e-2653.19ABC transporter permease n=1 Tax=Planctomycetes ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81701contigM-pyrifera_M_contig81701:2..301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score96.3
Seed ortholog evalue8.7e-18
Seed eggNOG ortholog314230.DSM3645_06816
Preferred nameoppC
KEGG koko:K02034,ko:K15582
KEGG TC3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25
KEGG Pathwayko01501,ko02010,ko02024,map01501,map02010,map02024
KEGG ModuleM00239,M00439
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Binding-protein-dependent transport system inner membrane component
EggNOG OGs2IYF0@203682,COG1173@1,COG1173@2
COG Functional cat.U
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.5553715-CDS-M-pyrifera_M_contig81701:1..3011622816724.5553715-CDS-M-pyrifera_M_contig81701:1..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81701 2..301 -
1692278141.8784442-CDS-M-pyrifera_M_contig81701:1..3011692278141.8784442-CDS-M-pyrifera_M_contig81701:1..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81701 2..301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81701.19125.1prot_M-pyrifera_M_contig81701.19125.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81701 2..301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81701.19125.1

>prot_M-pyrifera_M_contig81701.19125.1 ID=prot_M-pyrifera_M_contig81701.19125.1|Name=mRNA_M-pyrifera_M_contig81701.19125.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
LGELAFEDGYWELSWLDRQLVSIRASIFGLWQTGNWMGTDSKGRDIMSRI
VWGSRTSIIVALIATLCSLLIGVTYGSFSGLMGGRIDNFMMRVVDILYSL
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mRNA from alignment at M-pyrifera_M_contig81701:2..301-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81701.19125.1 ID=mRNA_M-pyrifera_M_contig81701.19125.1|Name=mRNA_M-pyrifera_M_contig81701.19125.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig81701:2..301- (Macrocystis pyrifera P11B4 male)
CTCGGCGAGCTGGCCTTCGAGGACGGCTACTGGGAGCTCAGCTGGCTCGA
CCGCCAGCTCGTCTCGATCCGCGCCAGCATCTTCGGACTGTGGCAGACCG
GCAACTGGATGGGCACCGACTCCAAGGGGCGCGACATCATGTCGCGCATC
GTCTGGGGCAGCCGCACGTCGATCATCGTCGCGCTGATCGCGACCCTGTG
CAGCCTCCTGATCGGCGTGACGTACGGCTCCTTCTCCGGCCTGATGGGCG
GGCGCATCGACAACTTCATGATGCGCGTGGTCGACATCCTCTATTCGCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81701:2..301-

>mRNA_M-pyrifera_M_contig81701.19125.1 ID=mRNA_M-pyrifera_M_contig81701.19125.1|Name=mRNA_M-pyrifera_M_contig81701.19125.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig81701:2..301- (Macrocystis pyrifera P11B4 male)
CTCGGCGAGCTGGCCTTCGAGGACGGCTACTGGGAGCTCAGCTGGCTCGA
CCGCCAGCTCGTCTCGATCCGCGCCAGCATCTTCGGACTGTGGCAGACCG
GCAACTGGATGGGCACCGACTCCAAGGGGCGCGACATCATGTCGCGCATC
GTCTGGGGCAGCCGCACGTCGATCATCGTCGCGCTGATCGCGACCCTGTG
CAGCCTCCTGATCGGCGTGACGTACGGCTCCTTCTCCGGCCTGATGGGCG
GGCGCATCGACAACTTCATGATGCGCGTGGTCGACATCCTCTATTCGCTA
CTCGGCGAGCTGGCCTTCGAGGACGGCTACTGGGAGCTCAGCTGGCTCGA
CCGCCAGCTCGTCTCGATCCGCGCCAGCATCTTCGGACTGTGGCAGACCG
GCAACTGGATGGGCACCGACTCCAAGGGGCGCGACATCATGTCGCGCATC
GTCTGGGGCAGCCGCACGTCGATCATCGTCGCGCTGATCGCGACCCTGTG
CAGCCTCCTGATCGGCGTGACGTACGGCTCCTTCTCCGGCCTGATGGGCG
GGCGCATCGACAACTTCATGATGCGCGTGGTCGACATCCTCTATTCGCTA
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