mRNA_M-pyrifera_M_contig81646.19111.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81646.19111.1
Unique NamemRNA_M-pyrifera_M_contig81646.19111.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A7S8IQI6_9HYPH (HTH luxR-type domain-containing protein n=1 Tax=Mesorhizobium sp. INR15 TaxID=2654248 RepID=A0A7S8IQI6_9HYPH)

HSP 1 Score: 69.3 bits (168), Expect = 2.470e-12
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 VRLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRAACDFDMCPL 198
            V L   + + I WA AGK+  DI+ +  L Y TVR+H++QAR+R G+ T+ Q + RAACD+D+ P+
Sbjct:  243 VVLGATQLECIKWAVAGKTIEDISVLTGLHYRTVRYHMEQARKRYGYATMRQTLARAACDYDLDPM 308          
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: UPI0016759EE1 (helix-turn-helix transcriptional regulator n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI0016759EE1)

HSP 1 Score: 67.0 bits (162), Expect = 6.930e-12
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   25 DVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRAACDFDMCPLE 201
            + + WAAAGKSY DIA I+ +   TVR+HLD AR   GF T+TQ IV+AA   D  PL+
Sbjct:  155 ECLRWAAAGKSYGDIAAIVGISERTVRYHLDNARSVYGFATITQAIVQAAKQLDFDPLD 213          
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A2W5PA87_9CAUL (HTH luxR-type domain-containing protein n=1 Tax=Phenylobacterium zucineum TaxID=284016 RepID=A0A2W5PA87_9CAUL)

HSP 1 Score: 53.9 bits (128), Expect = 2.610e-7
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    4 RLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRR----NGFHTVTQLI 162
            RL P E+D +AW A GKS  +I+ IL L  +TVRFH+D ARR+    N  H V +L+
Sbjct:   89 RLTPREKDALAWVAEGKSDWEISVILGLSEATVRFHVDNARRKLGAVNRAHAVARLL 145          
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A2R3QW41_PSEME (LuxR family transcriptional regulator n=7 Tax=Pseudomonas TaxID=286 RepID=A0A2R3QW41_PSEME)

HSP 1 Score: 55.1 bits (131), Expect = 2.640e-7
Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    4 RLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRA 171
            +L P ER+V+AW AAG+  ADIAT L L   TV  HL  ARRR G  T  Q I  A
Sbjct:  176 KLTPREREVLAWTAAGRRQADIATTLGLSERTVENHLRSARRRLGVTTTAQAIRTA 231          
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: UPI0007731414 (LuxR C-terminal-related transcriptional regulator n=2 Tax=Pseudomonas composti TaxID=658457 RepID=UPI0007731414)

HSP 1 Score: 54.7 bits (130), Expect = 3.660e-7
Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    4 RLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRA 171
            RL P ER+V+AW AAG+  ADIAT L L   TV  HL  AR+R G  T  Q I  A
Sbjct:  176 RLTPREREVLAWTAAGRRQADIATTLGLSERTVENHLRSARQRLGVTTTAQAIRTA 231          
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A1E4H0T6_9CAUL (HTH luxR-type domain-containing protein n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4H0T6_9CAUL)

HSP 1 Score: 54.7 bits (130), Expect = 3.730e-7
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    1 VRLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVR 168
            +RL   ERD ++W A GKS  +I+ IL L  +TVRFH+D ARR+ G    TQ + R
Sbjct:  180 IRLTDRERDALSWVAEGKSDWEISVILGLSETTVRFHVDNARRKLGAVNRTQAVAR 235          
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A521PJL4_9CAUL (LuxR family transcriptional regulator n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A521PJL4_9CAUL)

HSP 1 Score: 53.9 bits (128), Expect = 7.200e-7
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1
Query:    1 VRLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRAA 174
            VRL   ERD +AW A GKS  +I+ IL L  +TVRFH+D  RR+ G     Q + R A
Sbjct:  181 VRLTDRERDALAWVAEGKSDWEISVILGLSETTVRFHVDNGRRKLGAVNRAQAVARLA 238          
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A4R3FD20_9HYPH (LuxR family quorum-sensing system transcriptional regulator SinR n=2 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A4R3FD20_9HYPH)

HSP 1 Score: 52.8 bits (125), Expect = 1.910e-6
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    4 RLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRA 171
            R+ P ER+V+ WAAAGKSY +IA IL +   TVRF +  AR++    + TQ I  A
Sbjct:  179 RITPREREVLRWAAAGKSYWEIAIILGITERTVRFFMSNARQKLDVVSNTQAIAEA 234          
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A370HYZ4_9HYPH (LuxR family quorum sensing-dependent transcriptional regulator n=1 Tax=Microvirga subterranea TaxID=186651 RepID=A0A370HYZ4_9HYPH)

HSP 1 Score: 52.8 bits (125), Expect = 1.920e-6
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    4 RLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRAACDFDMCP 195
            RL P ER+V+ WAAAGKS  + +TIL +  +TV  HLD  RR+      TQ +V A    ++ P
Sbjct:  180 RLTPREREVLTWAAAGKSAWETSTILGISEATVITHLDNIRRKLQVANTTQAVVAALQSGELQP 243          
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: UPI0006840EB6 (LuxR family transcriptional regulator n=1 Tax=Bradyrhizobium sp. Cp5.3 TaxID=443598 RepID=UPI0006840EB6)

HSP 1 Score: 52.8 bits (125), Expect = 2.070e-6
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    7 LKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRA 171
            L P ER  +AWAA GK+ ADIA +  +   TV FHL+ ARR+    ++TQ +  A
Sbjct:  199 LSPRERQCLAWAAQGKTVADIAVLTEIAPRTVTFHLENARRKLNAASITQCVAEA 253          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S8IQI6_9HYPH2.470e-1245.45HTH luxR-type domain-containing protein n=1 Tax=Me... [more]
UPI0016759EE16.930e-1254.24helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A2W5PA87_9CAUL2.610e-749.12HTH luxR-type domain-containing protein n=1 Tax=Ph... [more]
A0A2R3QW41_PSEME2.640e-753.57LuxR family transcriptional regulator n=7 Tax=Pseu... [more]
UPI00077314143.660e-753.57LuxR C-terminal-related transcriptional regulator ... [more]
A0A1E4H0T6_9CAUL3.730e-748.21HTH luxR-type domain-containing protein n=1 Tax=Ph... [more]
A0A521PJL4_9CAUL7.200e-748.28LuxR family transcriptional regulator n=1 Tax=Phen... [more]
A0A4R3FD20_9HYPH1.910e-648.21LuxR family quorum-sensing system transcriptional ... [more]
A0A370HYZ4_9HYPH1.920e-643.75LuxR family quorum sensing-dependent transcription... [more]
UPI0006840EB62.070e-645.45LuxR family transcriptional regulator n=1 Tax=Brad... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81646contigM-pyrifera_M_contig81646:284..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.853131-CDS-M-pyrifera_M_contig81646:283..4901622816723.853131-CDS-M-pyrifera_M_contig81646:283..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81646 284..490 +
1692278141.4171393-CDS-M-pyrifera_M_contig81646:283..4901692278141.4171393-CDS-M-pyrifera_M_contig81646:283..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81646 284..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81646.19111.1prot_M-pyrifera_M_contig81646.19111.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81646 284..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81646.19111.1

>prot_M-pyrifera_M_contig81646.19111.1 ID=prot_M-pyrifera_M_contig81646.19111.1|Name=mRNA_M-pyrifera_M_contig81646.19111.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
VRLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTV
TQLIVRAACDFDMCPLEP*
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mRNA from alignment at M-pyrifera_M_contig81646:284..490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81646.19111.1 ID=mRNA_M-pyrifera_M_contig81646.19111.1|Name=mRNA_M-pyrifera_M_contig81646.19111.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig81646:284..490+ (Macrocystis pyrifera P11B4 male)
GTGCGGTTGAAACCGGTTGAACGTGACGTCATTGCATGGGCCGCGGCCGG CAAATCCTATGCGGATATTGCGACCATCCTGGCGCTGCCCTACAGCACGG TGCGTTTTCATCTGGACCAGGCACGCCGGCGCAACGGATTTCATACGGTG ACGCAGTTGATTGTGCGCGCCGCATGCGATTTCGATATGTGTCCCTTGGA GCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81646:284..490+

>mRNA_M-pyrifera_M_contig81646.19111.1 ID=mRNA_M-pyrifera_M_contig81646.19111.1|Name=mRNA_M-pyrifera_M_contig81646.19111.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig81646:284..490+ (Macrocystis pyrifera P11B4 male)
GTGCGGTTGAAACCGGTTGAACGTGACGTCATTGCATGGGCCGCGGCCGG
CAAATCCTATGCGGATATTGCGACCATCCTGGCGCTGCCCTACAGCACGG
TGCGTTTTCATCTGGACCAGGCACGCCGGCGCAACGGATTTCATACGGTG
ACGCAGTTGATTGTGCGCGCCGCATGCGATTTCGATATGTGTCCCTTGGA
GCCCTGAGTGCGGTTGAAACCGGTTGAACGTGACGTCATTGCATGGGCCG
CGGCCGGCAAATCCTATGCGGATATTGCGACCATCCTGGCGCTGCCCTAC
AGCACGGTGCGTTTTCATCTGGACCAGGCACGCCGGCGCAACGGATTTCA
TACGGTGACGCAGTTGATTGTGCGCGCCGCATGCGATTTCGATATGTGTC
CCTTGGAGCCCTGA
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