mRNA_M-pyrifera_M_contig81646.19111.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A7S8IQI6_9HYPH (HTH luxR-type domain-containing protein n=1 Tax=Mesorhizobium sp. INR15 TaxID=2654248 RepID=A0A7S8IQI6_9HYPH) HSP 1 Score: 69.3 bits (168), Expect = 2.470e-12 Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1 Query: 1 VRLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRAACDFDMCPL 198 V L + + I WA AGK+ DI+ + L Y TVR+H++QAR+R G+ T+ Q + RAACD+D+ P+ Sbjct: 243 VVLGATQLECIKWAVAGKTIEDISVLTGLHYRTVRYHMEQARKRYGYATMRQTLARAACDYDLDPM 308
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: UPI0016759EE1 (helix-turn-helix transcriptional regulator n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI0016759EE1) HSP 1 Score: 67.0 bits (162), Expect = 6.930e-12 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1 Query: 25 DVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRAACDFDMCPLE 201 + + WAAAGKSY DIA I+ + TVR+HLD AR GF T+TQ IV+AA D PL+ Sbjct: 155 ECLRWAAAGKSYGDIAAIVGISERTVRYHLDNARSVYGFATITQAIVQAAKQLDFDPLD 213
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A2W5PA87_9CAUL (HTH luxR-type domain-containing protein n=1 Tax=Phenylobacterium zucineum TaxID=284016 RepID=A0A2W5PA87_9CAUL) HSP 1 Score: 53.9 bits (128), Expect = 2.610e-7 Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1 Query: 4 RLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRR----NGFHTVTQLI 162 RL P E+D +AW A GKS +I+ IL L +TVRFH+D ARR+ N H V +L+ Sbjct: 89 RLTPREKDALAWVAEGKSDWEISVILGLSEATVRFHVDNARRKLGAVNRAHAVARLL 145
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A2R3QW41_PSEME (LuxR family transcriptional regulator n=7 Tax=Pseudomonas TaxID=286 RepID=A0A2R3QW41_PSEME) HSP 1 Score: 55.1 bits (131), Expect = 2.640e-7 Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 1 Query: 4 RLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRA 171 +L P ER+V+AW AAG+ ADIAT L L TV HL ARRR G T Q I A Sbjct: 176 KLTPREREVLAWTAAGRRQADIATTLGLSERTVENHLRSARRRLGVTTTAQAIRTA 231
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: UPI0007731414 (LuxR C-terminal-related transcriptional regulator n=2 Tax=Pseudomonas composti TaxID=658457 RepID=UPI0007731414) HSP 1 Score: 54.7 bits (130), Expect = 3.660e-7 Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 1 Query: 4 RLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRA 171 RL P ER+V+AW AAG+ ADIAT L L TV HL AR+R G T Q I A Sbjct: 176 RLTPREREVLAWTAAGRRQADIATTLGLSERTVENHLRSARQRLGVTTTAQAIRTA 231
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A1E4H0T6_9CAUL (HTH luxR-type domain-containing protein n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4H0T6_9CAUL) HSP 1 Score: 54.7 bits (130), Expect = 3.730e-7 Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1 Query: 1 VRLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVR 168 +RL ERD ++W A GKS +I+ IL L +TVRFH+D ARR+ G TQ + R Sbjct: 180 IRLTDRERDALSWVAEGKSDWEISVILGLSETTVRFHVDNARRKLGAVNRTQAVAR 235
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A521PJL4_9CAUL (LuxR family transcriptional regulator n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A521PJL4_9CAUL) HSP 1 Score: 53.9 bits (128), Expect = 7.200e-7 Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1 Query: 1 VRLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRAA 174 VRL ERD +AW A GKS +I+ IL L +TVRFH+D RR+ G Q + R A Sbjct: 181 VRLTDRERDALAWVAEGKSDWEISVILGLSETTVRFHVDNGRRKLGAVNRAQAVARLA 238
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A4R3FD20_9HYPH (LuxR family quorum-sensing system transcriptional regulator SinR n=2 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A4R3FD20_9HYPH) HSP 1 Score: 52.8 bits (125), Expect = 1.910e-6 Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1 Query: 4 RLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRA 171 R+ P ER+V+ WAAAGKSY +IA IL + TVRF + AR++ + TQ I A Sbjct: 179 RITPREREVLRWAAAGKSYWEIAIILGITERTVRFFMSNARQKLDVVSNTQAIAEA 234
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: A0A370HYZ4_9HYPH (LuxR family quorum sensing-dependent transcriptional regulator n=1 Tax=Microvirga subterranea TaxID=186651 RepID=A0A370HYZ4_9HYPH) HSP 1 Score: 52.8 bits (125), Expect = 1.920e-6 Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1 Query: 4 RLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRAACDFDMCP 195 RL P ER+V+ WAAAGKS + +TIL + +TV HLD RR+ TQ +V A ++ P Sbjct: 180 RLTPREREVLTWAAAGKSAWETSTILGISEATVITHLDNIRRKLQVANTTQAVVAALQSGELQP 243
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Match: UPI0006840EB6 (LuxR family transcriptional regulator n=1 Tax=Bradyrhizobium sp. Cp5.3 TaxID=443598 RepID=UPI0006840EB6) HSP 1 Score: 52.8 bits (125), Expect = 2.070e-6 Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 Query: 7 LKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVTQLIVRA 171 L P ER +AWAA GK+ ADIA + + TV FHL+ ARR+ ++TQ + A Sbjct: 199 LSPRERQCLAWAAQGKTVADIAVLTEIAPRTVTFHLENARRKLNAASITQCVAEA 253 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81646.19111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig81646.19111.1 >prot_M-pyrifera_M_contig81646.19111.1 ID=prot_M-pyrifera_M_contig81646.19111.1|Name=mRNA_M-pyrifera_M_contig81646.19111.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp VRLKPVERDVIAWAAAGKSYADIATILALPYSTVRFHLDQARRRNGFHTVback to top mRNA from alignment at M-pyrifera_M_contig81646:284..490+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig81646.19111.1 ID=mRNA_M-pyrifera_M_contig81646.19111.1|Name=mRNA_M-pyrifera_M_contig81646.19111.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig81646:284..490+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig81646:284..490+ >mRNA_M-pyrifera_M_contig81646.19111.1 ID=mRNA_M-pyrifera_M_contig81646.19111.1|Name=mRNA_M-pyrifera_M_contig81646.19111.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig81646:284..490+ (Macrocystis pyrifera P11B4 male)back to top |