mRNA_M-pyrifera_M_contig81640.19106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81640.19106.1
Unique NamemRNA_M-pyrifera_M_contig81640.19106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Match: A0A2J7RIU8_9NEOP (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RIU8_9NEOP)

HSP 1 Score: 84.3 bits (207), Expect = 3.210e-17
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    4 DPKNYGEAIHSTAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSCTWVYKTKRDKYGNVTQYKARLVARGDRQSASLYGKTYAPVTTLTSLRLFLSI 306
            +PKNY +A+ S  A +W  A++++L  L+D   W+    P   + I S  WV+K K+++Y  +TQ+KARLVARG +Q    Y   YAPV  L + R+ L++
Sbjct:   30 EPKNYEDAMKSQHATEWEKAIERELLALKDSDTWTVVDKPVKCNEIDS-KWVFKVKKNEYNEITQFKARLVARGFQQKGLQYDDIYAPVAKLQTFRILLAV 129          
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Match: F0X0S8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.990e-17
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    7 PKNYGEAIHSTAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSCTWVYKTKRDKYGNVTQYKARLVARGDRQSASL-YGKTYAPVTTLTSLRLFLSI 306
            P  Y EA+ S   V+W +A+  +  + ++   W  A  P+ +  ++ C W++  KRD+YG V +YKARL+ +G RQ+A + Y  TYAPV + +S+R+FL I
Sbjct:  118 PATYEEAVKSGDGVQWKEAIASEFQSPDEKKTWIIADRPSGQK-VIGCKWIFAIKRDEYGKVQRYKARLITQGFRQNAGVDYSNTYAPVFSTSSIRIFLGI 217          
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Match: A0A1Y1K3Y8_PHOPY (Uncharacterized protein (Fragment) n=4 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K3Y8_PHOPY)

HSP 1 Score: 84.0 bits (206), Expect = 1.010e-16
Identity = 42/103 (40.78%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    4 DPKNYGEAIHSTAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSCTWVYKTKRDKYGNVTQYKARLVARGDRQSASLYGKT--YAPVTTLTSLRLFLSI 306
            +P  Y +AI S  A  W  AM+++++ L +   W        +S ++ C WVYK KRD+ GNVT+YKARLVARG +Q+ +++  +  Y+PV  L S+R+FL++
Sbjct:  853 EPTTYDDAIASDEAKMWIQAMEREISALNENETWVLINESDIKSEVIQCKWVYKKKRDEVGNVTRYKARLVARGFQQT-NVHNSSDLYSPVAKLPSVRIFLAL 954          
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Match: A0A5C3EBA0_9BASI (Related to Retrotransposon protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EBA0_9BASI)

HSP 1 Score: 83.6 bits (205), Expect = 1.390e-16
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    4 DPKNYGEAIHSTAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSCTWVYKTKRDKYGNVTQYKARLVARGDRQSASL-YGKTYAPVTTLTSLRL 294
            DP+   +A  S    KW +A+K +L +L++ G W+    P  R AI +  WV+KTK+D  GNV++YKARLVARG  Q   + Y  TY PV ++TSLRL
Sbjct:  862 DPQMLAQARASPNWPKWEEAIKVELDSLDNTGTWTIVDLPAARKAITA-KWVFKTKQDADGNVSKYKARLVARGFTQMHGIDYHDTYLPVVSMTSLRL 958          
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Match: A0A0P1BFS2_9BASI (Gag-pol polyprotein n=1 Tax=Ceraceosorus bombacis TaxID=401625 RepID=A0A0P1BFS2_9BASI)

HSP 1 Score: 82.4 bits (202), Expect = 3.440e-16
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    4 DPKNYGEAIHSTAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSCTWVYKTKRDKYGNVTQYKARLVARGDRQSASLYGKTYAPVTTLTSLRLFLSI 306
            DP NY +A+ S ++  W  AM  +L        W+  P P D + ++   WV+KTKR+  G V  +KAR+VARGD+QSA    +TYAPV ++ S RL  S+
Sbjct:  223 DPNNYRQAMSSPSSTLWKAAMDAELQAQTKAATWTPVPCP-DGAQVIHSQWVFKTKRNAQGEVEHHKARVVARGDQQSADS-AETYAPVASMKSFRLLSSL 321          
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Match: A0A0J7NAF3_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NAF3_LASNI)

HSP 1 Score: 80.5 bits (197), Expect = 1.670e-15
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    4 DPKNYGEAIHSTAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSCTWVYKTKRDKYGNVTQYKARLVARGDRQSASL-YGKTYAPVTTLTSLRLFLSI 306
            +PK+  EA+      +W + MK ++A+L+    W     P  R AI SC W+YK K D+ GN+T+YKARLVA+G  Q     Y + +APV   T+ R+ LSI
Sbjct:  687 EPKSLSEALADKNKEEWINVMKDEMASLKRNQTWELCELPKGREAI-SCKWIYKLKTDEKGNITRYKARLVAQGFCQKYGTDYDEVFAPVAKQTTFRILLSI 787          
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Match: A5BP57_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BP57_VITVI)

HSP 1 Score: 79.3 bits (194), Expect = 1.790e-15
Identity = 35/92 (38.04%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   34 STAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSCTWVYKTKRDKYGNVTQYKARLVARGDRQSASL-YGKTYAPVTTLTSLRLFLSI 306
            S+ + KW +AMK ++ +++D G W     P     ++SC W++KT+RD  GN+ +YKARLVA+G  Q   + Y +T++PV++  SLR+ +++
Sbjct:  194 SSDSEKWIEAMKDEMKSMKDNGVWDLVELPKSVK-LISCKWIFKTRRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSLRIIMAL 284          
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Match: A0A8J4BBK8_9CHLO (Uncharacterized protein n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BBK8_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 3.130e-15
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    4 DPKNYGEAIHSTAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSCTWVYKTKRDKYGNVTQYKARLVARGDRQSASL-YGKTYAPVTTLTSLRLFLSI 306
            +PK+Y EA++S+ A +W  AM K++        W  A  P   + I+ C WVYK KR + G + ++KARLVA+G  Q A + YG+ +AP +   SLR  L++
Sbjct:  842 EPKSYDEAVNSSNADEWKQAMDKEITAQLANRTWELAK-PPPNARILPCRWVYKVKRAEDGGIERFKARLVAKGYEQRAGIDYGELFAPTSRFASLRTLLAV 942          
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Match: A0A8H4R3V9_9AGAR (Uncharacterized protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4R3V9_9AGAR)

HSP 1 Score: 79.3 bits (194), Expect = 4.280e-15
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    7 PKNYGEAIHSTAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSCTWVYKTKRDKYGNVTQYKARLVARGDRQSASL-YGK--TYAPVTTLTSLRLFLS 303
            P+ + EA+    A +W +AM +++ TLE MG W     P  R  +V C WV+  KRD+YG V ++KARLV +G  Q   + Y +  T+APV    +LR  L+
Sbjct:  894 PRTFEEALAGPEATQWKEAMDEEMGTLEKMGTWRKGMLPVGRK-VVGCRWVFTKKRDEYGRVVKFKARLVVQGFSQKPGVDYSEDGTFAPVMRFETLRTMLA 994          
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Match: A0A0J7K7B7_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7B7_LASNI)

HSP 1 Score: 78.6 bits (192), Expect = 7.960e-15
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 RDPKNYGEAIHSTAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSCTWVYKTKRDKYGNVTQYKARLVARGDRQSASL-YGKTYAPVTTLTSLRLFLSI 306
            R+PK++ EA+ S  A +W  AM  +L  L     W     P  ++ I+ C WV+K K ++ GNVT+YKARLVA+G  Q   + Y + +APV   T++R+ L+I
Sbjct:  804 REPKSFREALTSLDAERWRQAMTDELNGLMQNNTWELVDPPRYKT-ILGCKWVFKLKHNEMGNVTKYKARLVAQGFSQKFGIDYDEVFAPVVRQTTIRMLLTI 905          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81640.19106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2J7RIU8_9NEOP3.210e-1739.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
F0X0S8_9STRA3.990e-1738.61Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
A0A1Y1K3Y8_PHOPY1.010e-1640.78Uncharacterized protein (Fragment) n=4 Tax=Photinu... [more]
A0A5C3EBA0_9BASI1.390e-1645.92Related to Retrotransposon protein n=1 Tax=Ustilag... [more]
A0A0P1BFS2_9BASI3.440e-1641.58Gag-pol polyprotein n=1 Tax=Ceraceosorus bombacis ... [more]
A0A0J7NAF3_LASNI1.670e-1541.18Retrovirus-related gag-pol polyprotein n=1 Tax=Las... [more]
A5BP57_VITVI1.790e-1538.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J4BBK8_9CHLO3.130e-1539.22Uncharacterized protein n=3 Tax=Volvox africanus T... [more]
A0A8H4R3V9_9AGAR4.280e-1539.22Uncharacterized protein n=1 Tax=Agrocybe pediades ... [more]
A0A0J7K7B7_LASNI7.960e-1539.81Retrovirus-related pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81640contigM-pyrifera_M_contig81640:621..926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score85.9
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog7029.ACYPI062055-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3CNH1@33208,3DKAJ@33213,3EECK@33342,3SZW4@50557,42AEX@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.639083-CDS-M-pyrifera_M_contig81640:620..9261622816723.639083-CDS-M-pyrifera_M_contig81640:620..926Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81640 621..926 +
1692278141.300581-CDS-M-pyrifera_M_contig81640:620..9261692278141.300581-CDS-M-pyrifera_M_contig81640:620..926Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81640 621..926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81640.19106.1prot_M-pyrifera_M_contig81640.19106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81640 621..926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81640.19106.1

>prot_M-pyrifera_M_contig81640.19106.1 ID=prot_M-pyrifera_M_contig81640.19106.1|Name=mRNA_M-pyrifera_M_contig81640.19106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
RDPKNYGEAIHSTAAVKWNDAMKKQLATLEDMGAWSTAPFPTDRSAIVSC
TWVYKTKRDKYGNVTQYKARLVARGDRQSASLYGKTYAPVTTLTSLRLFL
SI
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mRNA from alignment at M-pyrifera_M_contig81640:621..926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81640.19106.1 ID=mRNA_M-pyrifera_M_contig81640.19106.1|Name=mRNA_M-pyrifera_M_contig81640.19106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig81640:621..926+ (Macrocystis pyrifera P11B4 male)
CGTGATCCGAAGAACTACGGAGAGGCAATCCACTCGACGGCAGCGGTGAA GTGGAACGACGCCATGAAGAAGCAGCTGGCTACTCTGGAGGACATGGGCG CCTGGAGTACTGCTCCTTTCCCTACGGACCGAAGTGCCATTGTCTCGTGC ACCTGGGTGTACAAGACCAAGCGAGACAAGTACGGGAACGTGACTCAGTA CAAGGCTCGCCTGGTGGCCCGCGGCGATCGGCAGAGCGCGAGTCTCTATG GGAAGACTTACGCCCCAGTGACAACTCTGACGTCGCTGCGGCTCTTCCTC TCCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81640:621..926+

>mRNA_M-pyrifera_M_contig81640.19106.1 ID=mRNA_M-pyrifera_M_contig81640.19106.1|Name=mRNA_M-pyrifera_M_contig81640.19106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig81640:621..926+ (Macrocystis pyrifera P11B4 male)
CGTGATCCGAAGAACTACGGAGAGGCAATCCACTCGACGGCAGCGGTGAA
GTGGAACGACGCCATGAAGAAGCAGCTGGCTACTCTGGAGGACATGGGCG
CCTGGAGTACTGCTCCTTTCCCTACGGACCGAAGTGCCATTGTCTCGTGC
ACCTGGGTGTACAAGACCAAGCGAGACAAGTACGGGAACGTGACTCAGTA
CAAGGCTCGCCTGGTGGCCCGCGGCGATCGGCAGAGCGCGAGTCTCTATG
GGAAGACTTACGCCCCAGTGACAACTCTGACGTCGCTGCGGCTCTTCCTC
TCCATTCGTGATCCGAAGAACTACGGAGAGGCAATCCACTCGACGGCAGC
GGTGAAGTGGAACGACGCCATGAAGAAGCAGCTGGCTACTCTGGAGGACA
TGGGCGCCTGGAGTACTGCTCCTTTCCCTACGGACCGAAGTGCCATTGTC
TCGTGCACCTGGGTGTACAAGACCAAGCGAGACAAGTACGGGAACGTGAC
TCAGTACAAGGCTCGCCTGGTGGCCCGCGGCGATCGGCAGAGCGCGAGTC
TCTATGGGAAGACTTACGCCCCAGTGACAACTCTGACGTCGCTGCGGCTC
TTCCTCTCCATT
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