mRNA_M-pyrifera_M_contig81604.19101.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81604.19101.1
Unique NamemRNA_M-pyrifera_M_contig81604.19101.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Match: A0A5A8D9M5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D9M5_CAFRO)

HSP 1 Score: 161 bits (408), Expect = 1.040e-48
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 1
Query:    4 GRVRTKTVKRSARAIVESYYHKLTTDFDTNKRVCDEVADVPSKRMRNKIAGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDT-ESIRVDSDTKAMLVKLGLSFADQVGEEERRRYGRAPRAPRR 405
            GRVRTKTVKRSAR IVE YY KLT+DF  NKR+CDEV+  PSKRMRNKIAGFVTHL+RRIERG +VRG+SLKLQEEERERRMDY+P+ S +   E + VD DTKAML++L LSFA  +  +     G   R PRR
Sbjct:    2 GRVRTKTVKRSARLIVERYYAKLTSDFHLNKRLCDEVSVTPSKRMRNKIAGFVTHLIRRIERGDNVRGISLKLQEEERERRMDYVPDVSALKAIEDVAVDKDTKAMLMELDLSFAPALKLDS----GAKARRPRR 132          
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Match: A0A7S1G9V8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9V8_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.170e-47
Identity = 90/132 (68.18%), Postives = 102/132 (77.27%), Query Frame = 1
Query:    4 GRVRTKTVKRSARAIVESYYHKLTTDFDTNKRVCDEVADVPSKRMRNKIAGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDTESIRVDSDTKAMLVKLGLSFADQVGE--EERRRYGRAPR 393
            GRVRTKTVKRSAR I+E YY +LT DF  NKRV DEVA VPSKRMRNKIAG+VTHLM+RI+RG  VRG+SLKLQE ERERRMD++PE S ID ESI +D  TK ML KL LS    + +  + RR YGR PR
Sbjct:   15 GRVRTKTVKRSARHIIEKYYSRLTLDFAVNKRVVDEVAVVPSKRMRNKIAGYVTHLMKRIQRG-PVRGISLKLQEAERERRMDFVPEVSAIDVESIDIDPTTKEMLAKLDLSHLPGLNDVSDARRDYGRGPR 145          
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Match: A0A7S1TNB6_9RHOD (Hypothetical protein n=2 Tax=Porphyridiaceae TaxID=2799 RepID=A0A7S1TNB6_9RHOD)

HSP 1 Score: 157 bits (397), Expect = 6.700e-47
Identity = 87/139 (62.59%), Postives = 108/139 (77.70%), Query Frame = 1
Query:    4 GRVRTKTVKRSARAIVESYYHKLTTDFDTNKRVCDEVADVPSKRMRNKIAGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDTE--SIRVDSDTKAMLVKLGLSFADQVGEE---ERRRYGRAPRAPRR 405
            GRVRTKT+K+SAR ++E YY +LT DF TNKRVCDEVA +P+KR+RN+IAG++THLM RI+RG  VRGVSLKLQEEERERRMD++PE SE++TE   I VD+DTKAML  LG +F + V +    E RR+ R    P R
Sbjct:    2 GRVRTKTIKKSARVVIEKYYSRLTLDFQTNKRVCDEVAIIPTKRLRNQIAGYLTHLMSRIQRG-PVRGVSLKLQEEERERRMDFVPEVSEVETEIAPIEVDADTKAMLTDLGFNFKNVVVQHAVSEPRRFQRRENQPPR 139          
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Match: R7QCM0_CHOCR (40S ribosomal protein S17 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCM0_CHOCR)

HSP 1 Score: 154 bits (390), Expect = 5.870e-46
Identity = 84/134 (62.69%), Postives = 105/134 (78.36%), Query Frame = 1
Query:    4 GRVRTKTVKRSARAIVESYYHKLTTDFDTNKRVCDEVADVPSKRMRNKIAGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDTESIRVDSDTKAMLVKLGLSFADQVGEEERRRYGRAPRAPRR 405
            GRVRTKTVK+SAR I+E YY +LT DF TNKR+CDEVA +PSKR+RNK+AGFVTHLM RI++G  VRG+SLKLQEEERERRMD++PE S IDT+ I VDS+T+ ML +L L+    +  ++ +  GR  R  RR
Sbjct:    2 GRVRTKTVKKSARQIIEKYYSRLTLDFQTNKRICDEVAVIPSKRLRNKVAGFVTHLMTRIQKG-PVRGISLKLQEEERERRMDFVPEVSAIDTDVIEVDSETRDMLKELDLAKLPGLVLQQTQTGGRGRRYERR 134          
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Match: A0A1X6NR39_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NR39_PORUM)

HSP 1 Score: 154 bits (390), Expect = 7.300e-46
Identity = 80/117 (68.38%), Postives = 95/117 (81.20%), Query Frame = 1
Query:    4 GRVRTKTVKRSARAIVESYYHKLTTDFDTNKRVCDEVADVPSKRMRNKIAGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDTESIRVDSDTKAMLVKLGLSFADQV 354
            GRVRTKTVK+SAR I+E YY +LT DF TNKR+CDEVA +PSKR+RNKIAGFVTHLM RI++G  VRG+SLKLQEEERERRMD++PE S +DT  I +D+DTK ML  LG+     V
Sbjct:    2 GRVRTKTVKKSARVIIEKYYSRLTLDFQTNKRICDEVAIIPSKRLRNKIAGFVTHLMARIQKG-PVRGISLKLQEEERERRMDFVPEVSAVDTGMIEIDADTKKMLEALGMGNLPHV 117          
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Match: A0A7S1F830_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F830_NOCSC)

HSP 1 Score: 154 bits (389), Expect = 7.360e-46
Identity = 77/117 (65.81%), Postives = 98/117 (83.76%), Query Frame = 1
Query:    4 GRVRTKTVKRSARAIVESYYHKLTTDFDTNKRVCDEVADVPSKRMRNKIAGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDTESIRVDSDTKAMLVKLGLSFADQV 354
            GRVRTKTVK+++R IVE Y+ KLT DF  NK++C+EVA +PSKR+RNKIAGF THLM+RI+RG  VRG+SLKLQEEERERRM+Y+PEKSE+DT+ I+VD DT  ML +LG++    +
Sbjct:    2 GRVRTKTVKKASRVIVEKYFSKLTLDFQVNKKICEEVATIPSKRVRNKIAGFTTHLMKRIQRG-PVRGISLKLQEEERERRMEYVPEKSEVDTDYIKVDPDTMLMLKELGMNGLQNI 117          
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Match: A0A7J7IQE7_9RHOD (40S ribosomal protein S17 n=2 Tax=Cyanidiaceae TaxID=265316 RepID=A0A7J7IQE7_9RHOD)

HSP 1 Score: 153 bits (387), Expect = 1.630e-45
Identity = 81/112 (72.32%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    4 GRVRTKTVKRSARAIVESYYHKLTT-DFDTNKRVCDEVADVPSKRMRNKIAGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDTESIRVDSDTKAMLVKLGL 336
            GRVRTKTVK+SAR I+E YY KL+  DF TNKRVCDEVA +PSKRMRNK+AGF+THLM+RI+RG  VRG+SLKLQEEERERRMD++P+ S ++TE+I VD DTKAML  +GL
Sbjct:    2 GRVRTKTVKKSARVIIEKYYSKLSANDFHTNKRVCDEVAILPSKRMRNKVAGFITHLMKRIQRG-PVRGISLKLQEEERERRMDFVPDVSAVNTENIEVDPDTKAMLRSIGL 112          
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Match: F0W9I1_9STRA (40S ribosomal protein S17 putative n=2 Tax=Albugo TaxID=65356 RepID=F0W9I1_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.860e-45
Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 1
Query:   10 VRTKTVKRSARAIVESYYHKLTTDFDTNKRVCDEVADVPSKRMRNKIAGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDTESIRVDSDTKAMLVKLGLSFADQVGEEERRRY 378
            VRTKTVKRSA  I+E YY +LT +FDTNKR+CDEVA +PSKRMRNKIAG++THLM+RI++G  VRGVSLKLQEEERERR+D++P+ S I+T++I VD++T+ ML  L L F   V +++ R Y
Sbjct:    3 VRTKTVKRSAIQIIEKYYSRLTLEFDTNKRICDEVAIIPSKRMRNKIAGYITHLMKRIQKG-QVRGVSLKLQEEERERRLDFVPDVSAINTDTIEVDAETQKMLTHLNLDFPSVVVQQKSREY 124          
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Match: A4RWR0_OSTLU (Ribosomal protein S17, component of cytosolic 80S ribosome and 40S small subunit n=3 Tax=Ostreococcus TaxID=70447 RepID=A4RWR0_OSTLU)

HSP 1 Score: 153 bits (386), Expect = 2.380e-45
Identity = 79/133 (59.40%), Postives = 100/133 (75.19%), Query Frame = 1
Query:    4 GRVRTKTVKRSARAIVESYYHKLTTDFDTNKRVCDEVADVPSKRMRNKIAGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDTESIRVDSDTKAMLVKLGLSFADQVGEEERRRYGRAPRAPR 402
            GRVRTKTVK+++R I+E YY +LT DF TNKR+ D++A +PSKR+RNKIAGF THLM+RI+RG  VRG+SLKLQEEERERRMD++PEKS ++T+SI VD DT  ML  + +     V    R  Y + PR  R
Sbjct:    2 GRVRTKTVKKASRQIIEKYYSRLTLDFATNKRIADDIAIIPSKRLRNKIAGFTTHLMKRIQRG-PVRGISLKLQEEERERRMDFVPEKSALETDSIEVDRDTMDMLKSMNMGNLQGVSVSSRAHYNKGPRRDR 133          
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Match: A0A7J6LCG5_PERCH (40S ribosomal protein S17 n=6 Tax=Perkinsus TaxID=28000 RepID=A0A7J6LCG5_PERCH)

HSP 1 Score: 152 bits (385), Expect = 2.990e-45
Identity = 81/127 (63.78%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    4 GRVRTKTVKRSARAIVESYYHKLTTDFDTNKRVCDEVADVPSKRMRNKIAGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDTESIRVDSDTKAMLVKLGLSFADQVGEEERRRYGR 384
            GRVRTKTVKR+AR IVE YY KLT DF  NK++ +EVA +PSKR+RNKIAGFVTHLM+RI++G  VRG+SLKLQEEERER+MD++PEKSE+DTE I VDSDT  +L +L +     +   +R  Y R
Sbjct:    2 GRVRTKTVKRAARQIVEKYYSKLTLDFQLNKKISEEVAVIPSKRLRNKIAGFVTHLMKRIQKG-PVRGISLKLQEEERERKMDFVPEKSEVDTEHIVVDSDTAEILKELNMDQLPNIEVSDRMGYAR 127          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81604.19101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D9M5_CAFRO1.040e-4867.41Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S1G9V8_9STRA3.170e-4768.18Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1TNB6_9RHOD6.700e-4762.59Hypothetical protein n=2 Tax=Porphyridiaceae TaxID... [more]
R7QCM0_CHOCR5.870e-4662.6940S ribosomal protein S17 n=1 Tax=Chondrus crispus... [more]
A0A1X6NR39_PORUM7.300e-4668.38Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1F830_NOCSC7.360e-4665.81Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7J7IQE7_9RHOD1.630e-4572.3240S ribosomal protein S17 n=2 Tax=Cyanidiaceae Tax... [more]
F0W9I1_9STRA1.860e-4563.4140S ribosomal protein S17 putative n=2 Tax=Albugo ... [more]
A4RWR0_OSTLU2.380e-4559.40Ribosomal protein S17, component of cytosolic 80S ... [more]
A0A7J6LCG5_PERCH2.990e-4563.7840S ribosomal protein S17 n=6 Tax=Perkinsus TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81604contigM-pyrifera_M_contig81604:248..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score154.8
Seed ortholog evalue2.8e-35
Seed eggNOG ortholog242159.ABO95665
Preferred nameRPS17
KEGG koko:K02962
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1990904
EggNOG free text desc.Ribosomal protein S17
EggNOG OGs34HSI@3041,37UJA@33090,COG1383@1,KOG0187@2759
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.3246799-CDS-M-pyrifera_M_contig81604:247..6581622816723.3246799-CDS-M-pyrifera_M_contig81604:247..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81604 248..658 -
1692278141.0877264-CDS-M-pyrifera_M_contig81604:247..6581692278141.0877264-CDS-M-pyrifera_M_contig81604:247..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81604 248..658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81604.19101.1prot_M-pyrifera_M_contig81604.19101.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81604 248..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81604.19101.1

>prot_M-pyrifera_M_contig81604.19101.1 ID=prot_M-pyrifera_M_contig81604.19101.1|Name=mRNA_M-pyrifera_M_contig81604.19101.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
QGRVRTKTVKRSARAIVESYYHKLTTDFDTNKRVCDEVADVPSKRMRNKI
AGFVTHLMRRIERGGSVRGVSLKLQEEERERRMDYIPEKSEIDTESIRVD
SDTKAMLVKLGLSFADQVGEEERRRYGRAPRAPRRG*
back to top

mRNA from alignment at M-pyrifera_M_contig81604:248..658-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81604.19101.1 ID=mRNA_M-pyrifera_M_contig81604.19101.1|Name=mRNA_M-pyrifera_M_contig81604.19101.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig81604:248..658- (Macrocystis pyrifera P11B4 male)
CAGGGACGAGTTCGCACCAAGACTGTGAAGCGCTCTGCTCGCGCAATTGT GGAATCGTACTACCACAAGCTCACGACAGACTTCGACACGAACAAGCGCG TGTGTGACGAAGTGGCGGACGTGCCTTCGAAGCGAATGCGCAACAAGATT GCTGGGTTCGTGACCCACTTGATGCGCCGAATTGAACGCGGTGGCTCTGT GCGTGGTGTTTCTCTCAAGCTCCAAGAGGAGGAGCGTGAGCGCCGCATGG ACTACATCCCAGAAAAGTCTGAAATCGACACCGAATCCATCCGTGTTGAC TCTGACACCAAGGCTATGCTCGTCAAGCTTGGCCTCAGTTTCGCTGATCA GGTCGGGGAGGAGGAACGCCGCCGTTACGGCCGCGCTCCACGTGCTCCAC GCCGCGGTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81604:248..658-

>mRNA_M-pyrifera_M_contig81604.19101.1 ID=mRNA_M-pyrifera_M_contig81604.19101.1|Name=mRNA_M-pyrifera_M_contig81604.19101.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig81604:248..658- (Macrocystis pyrifera P11B4 male)
CAGGGACGAGTTCGCACCAAGACTGTGAAGCGCTCTGCTCGCGCAATTGT
GGAATCGTACTACCACAAGCTCACGACAGACTTCGACACGAACAAGCGCG
TGTGTGACGAAGTGGCGGACGTGCCTTCGAAGCGAATGCGCAACAAGATT
GCTGGGTTCGTGACCCACTTGATGCGCCGAATTGAACGCGGTGGCTCTGT
GCGTGGTGTTTCTCTCAAGCTCCAAGAGGAGGAGCGTGAGCGCCGCATGG
ACTACATCCCAGAAAAGTCTGAAATCGACACCGAATCCATCCGTGTTGAC
TCTGACACCAAGGCTATGCTCGTCAAGCTTGGCCTCAGTTTCGCTGATCA
GGTCGGGGAGGAGGAACGCCGCCGTTACGGCCGCGCTCCACGTGCTCCAC
GCCGCGGTTAACAGGGACGAGTTCGCACCAAGACTGTGAAGCGCTCTGCT
CGCGCAATTGTGGAATCGTACTACCACAAGCTCACGACAGACTTCGACAC
GAACAAGCGCGTGTGTGACGAAGTGGCGGACGTGCCTTCGAAGCGAATGC
GCAACAAGATTGCTGGGTTCGTGACCCACTTGATGCGCCGAATTGAACGC
GGTGGCTCTGTGCGTGGTGTTTCTCTCAAGCTCCAAGAGGAGGAGCGTGA
GCGCCGCATGGACTACATCCCAGAAAAGTCTGAAATCGACACCGAATCCA
TCCGTGTTGACTCTGACACCAAGGCTATGCTCGTCAAGCTTGGCCTCAGT
TTCGCTGATCAGGTCGGGGAGGAGGAACGCCGCCGTTACGGCCGCGCTCC
ACGTGCTCCACGCCGCGGTTAA
back to top