mRNA_M-pyrifera_M_contig81556.19086.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81556.19086.1
Unique NamemRNA_M-pyrifera_M_contig81556.19086.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81556.19086.1 vs. uniprot
Match: A0A0H4XER5_9DELT (Uncharacterized protein n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4XER5_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 2.670e-9
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    7 GYRDADGVVVIPPIYKFASKEFNEGLAYVVAKDRRGYIHPDGSWAFDAKFTYCDKFVNGRARV 195
            G+ D  G  VIP IY      F +G+A V    R GY+HPDGSWA + +FT    F +GRA V
Sbjct:  236 GFIDRSGQQVIPAIYDAVMGGFFQGVAPVKQGTRFGYLHPDGSWALEPRFTMAQPFADGRAAV 298
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81556.19086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0H4XER5_9DELT2.670e-946.03Uncharacterized protein n=1 Tax=Myxococcus hansupu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81556contigM-pyrifera_M_contig81556:348..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog1297742.A176_01467
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dextransucrase activity
EggNOG OGsCOG5263@1,COG5263@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.3788693-CDS-M-pyrifera_M_contig81556:347..5481622816722.3788693-CDS-M-pyrifera_M_contig81556:347..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81556 348..548 +
1692278140.4854934-CDS-M-pyrifera_M_contig81556:347..5481692278140.4854934-CDS-M-pyrifera_M_contig81556:347..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81556 348..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81556.19086.1prot_M-pyrifera_M_contig81556.19086.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81556 348..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81556.19086.1

>prot_M-pyrifera_M_contig81556.19086.1 ID=prot_M-pyrifera_M_contig81556.19086.1|Name=mRNA_M-pyrifera_M_contig81556.19086.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MQGYRDADGVVVIPPIYKFASKEFNEGLAYVVAKDRRGYIHPDGSWAFDA
KFTYCDKFVNGRARVRQ
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mRNA from alignment at M-pyrifera_M_contig81556:348..548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81556.19086.1 ID=mRNA_M-pyrifera_M_contig81556.19086.1|Name=mRNA_M-pyrifera_M_contig81556.19086.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig81556:348..548+ (Macrocystis pyrifera P11B4 male)
ATGCAGGGGTATCGGGATGCGGACGGCGTAGTCGTCATCCCACCGATCTA
CAAGTTTGCAAGCAAGGAGTTCAACGAGGGGCTTGCGTATGTGGTAGCCA
AAGATCGGAGAGGGTACATCCATCCCGATGGCTCGTGGGCATTTGATGCG
AAGTTCACCTACTGCGACAAGTTTGTCAATGGGCGGGCGAGAGTTCGACA
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81556:348..548+

>mRNA_M-pyrifera_M_contig81556.19086.1 ID=mRNA_M-pyrifera_M_contig81556.19086.1|Name=mRNA_M-pyrifera_M_contig81556.19086.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig81556:348..548+ (Macrocystis pyrifera P11B4 male)
ATGCAGGGGTATCGGGATGCGGACGGCGTAGTCGTCATCCCACCGATCTA
CAAGTTTGCAAGCAAGGAGTTCAACGAGGGGCTTGCGTATGTGGTAGCCA
AAGATCGGAGAGGGTACATCCATCCCGATGGCTCGTGGGCATTTGATGCG
AAGTTCACCTACTGCGACAAGTTTGTCAATGGGCGGGCGAGAGTTCGACA
GATGCAGGGGTATCGGGATGCGGACGGCGTAGTCGTCATCCCACCGATCT
ACAAGTTTGCAAGCAAGGAGTTCAACGAGGGGCTTGCGTATGTGGTAGCC
AAAGATCGGAGAGGGTACATCCATCCCGATGGCTCGTGGGCATTTGATGC
GAAGTTCACCTACTGCGACAAGTTTGTCAATGGGCGGGCGAGAGTTCGAC
AG
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