mRNA_M-pyrifera_M_contig81551.19084.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81551.19084.1
Unique NamemRNA_M-pyrifera_M_contig81551.19084.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Match: A0A812XIK8_9DINO (ATAD2 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812XIK8_9DINO)

HSP 1 Score: 118 bits (295), Expect = 4.710e-29
Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:    1 ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLSTMADKVDAREYLSYETFAKDLDLITRNAIEYN-PDDAKGTQIKRAARRLRDAADTVAYDCDRRM 339
            +++L +LR++LR +L +F +D +LR  +RPVDPE VPDYYEII HPMDLSTM  KVD   YL Y  FA DLDLI  NA +YN P  A+G  I +AA  LRD ADT+A+  DRR+
Sbjct:  253 DKRLRQLRLLLREVLGEFGRDSKLRCLSRPVDPELVPDYYEIIEHPMDLSTMRSKVDEGAYLCYADFAGDLDLILSNAKQYNSPRVARGRAIIQAAHSLRDVADTMAHAFDRRV 366
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BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Match: A0A674BKM2_SALTR (ATPase family AAA domain-containing protein 2-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674BKM2_SALTR)

HSP 1 Score: 95.9 bits (237), Expect = 9.940e-21
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLSTMADKVDAREYLSYETFAKDLDLITRNAIEYNPD-DAKGTQIKRAARRLRDAADTVAYD 324
            E  L +LR+ LR + D  S+D R + F +PVD E+VPDY ++I HPMDLST+  KVD  +Y++   F  D+DLI +NA+EYNPD D    QI+  A  L+D    +  D
Sbjct:  619 EDTLRELRLFLRNVTDRLSQDKRFKAFTKPVDIEEVPDYIKVIRHPMDLSTVLSKVDLHKYMTVREFVNDVDLIWKNALEYNPDSDPSDRQIRHRACALKDTTHAIIRD 727
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BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Match: A0A674BL91_SALTR (ATPase family AAA domain-containing protein 2-like n=5 Tax=Salmo trutta TaxID=8032 RepID=A0A674BL91_SALTR)

HSP 1 Score: 95.9 bits (237), Expect = 1.000e-20
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLSTMADKVDAREYLSYETFAKDLDLITRNAIEYNPD-DAKGTQIKRAARRLRDAADTVAYD 324
            E  L +LR+ LR + D  S+D R + F +PVD E+VPDY ++I HPMDLST+  KVD  +Y++   F  D+DLI +NA+EYNPD D    QI+  A  L+D    +  D
Sbjct:  619 EDTLRELRLFLRNVTDRLSQDKRFKAFTKPVDIEEVPDYIKVIRHPMDLSTVLSKVDLHKYMTVREFVNDVDLIWKNALEYNPDSDPSDRQIRHRACALKDTTHAIIRD 727
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BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Match: A0A1S3M1W2_SALSA (ATPase family AAA domain-containing protein 2-like isoform X1 n=10 Tax=Salmonidae TaxID=8015 RepID=A0A1S3M1W2_SALSA)

HSP 1 Score: 95.9 bits (237), Expect = 1.020e-20
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLSTMADKVDAREYLSYETFAKDLDLITRNAIEYNPD-DAKGTQIKRAARRLRDAADTVAYD 324
            E  L +LR+ LR + D  S+D R + F +PVD E+VPDY ++I HPMDLST+  KVD  +Y++   F  D+DLI +NA+EYNPD D    QI+  A  L+D    +  D
Sbjct:  890 EDTLRELRLFLRNVTDRLSQDKRFKAFTKPVDIEEVPDYIKVIRHPMDLSTVLSKVDLHKYMTVREFVNDVDLIWKNALEYNPDSDPSDRQIRHRACALKDTTHAIIRD 998
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BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Match: A0A061A745_ONCMY (Bromo domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A061A745_ONCMY)

HSP 1 Score: 89.0 bits (219), Expect = 1.810e-20
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:    1 ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLSTMADKVDAREYLSYETFAKDLDLITRNAIEYNPD 252
            E  L +LR+ LR + +  S+D R + F +PVD E+VPDY ++I HPMDLST+  KVD  +Y++   F  D+DLI +NA+EYNPD
Sbjct:   31 EDTLRELRLFLRNVTERLSQDKRFKAFTKPVDVEEVPDYIKVIRHPMDLSTVLSKVDLHKYVTVREFVNDVDLIWKNALEYNPD 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Match: A0A8C7N784_ONCKI (ATPase family AAA domain containing 2 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7N784_ONCKI)

HSP 1 Score: 94.4 bits (233), Expect = 3.440e-20
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLSTMADKVDAREYLSYETFAKDLDLITRNAIEYNPD-DAKGTQIKRAARRLRDAADTVAYD 324
            E  L +LR+ LR + +  S+D R + F +PVD E+VPDY ++I HPMDLST+  KVD  +Y++   F  D+DLI +NA+EYNPD D    QI+  A  L+D    +  D
Sbjct:  584 EDTLRELRLFLRNVTERLSQDKRFKAFTKPVDVEEVPDYIKVIRHPMDLSTVLSKVDLHKYVTVREFVNDVDLIWKNALEYNPDSDPSDRQIRHRACALKDTTHAIIRD 692
[Close]
BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Match: A0A8C7QEL0_ONCMY (Bromo domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8C7QEL0_ONCMY)

HSP 1 Score: 94.4 bits (233), Expect = 3.450e-20
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLSTMADKVDAREYLSYETFAKDLDLITRNAIEYNPD-DAKGTQIKRAARRLRDAADTVAYD 324
            E  L +LR+ LR + +  S+D R + F +PVD E+VPDY ++I HPMDLST+  KVD  +Y++   F  D+DLI +NA+EYNPD D    QI+  A  L+D    +  D
Sbjct:  620 EDTLRELRLFLRNVTERLSQDKRFKAFTKPVDVEEVPDYIKVIRHPMDLSTVLSKVDLHKYVTVREFVNDVDLIWKNALEYNPDSDPSDRQIRHRACALKDTTHAIIRD 728
[Close]
BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Match: A0A8C7KQI9_ONCKI (ATPase family AAA domain containing 2 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7KQI9_ONCKI)

HSP 1 Score: 94.4 bits (233), Expect = 3.450e-20
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLSTMADKVDAREYLSYETFAKDLDLITRNAIEYNPD-DAKGTQIKRAARRLRDAADTVAYD 324
            E  L +LR+ LR + +  S+D R + F +PVD E+VPDY ++I HPMDLST+  KVD  +Y++   F  D+DLI +NA+EYNPD D    QI+  A  L+D    +  D
Sbjct:  629 EDTLRELRLFLRNVTERLSQDKRFKAFTKPVDVEEVPDYIKVIRHPMDLSTVLSKVDLHKYVTVREFVNDVDLIWKNALEYNPDSDPSDRQIRHRACALKDTTHAIIRD 737
[Close]
BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Match: A0A8C7VLT4_ONCMY (Bromo domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8C7VLT4_ONCMY)

HSP 1 Score: 94.4 bits (233), Expect = 3.450e-20
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLSTMADKVDAREYLSYETFAKDLDLITRNAIEYNPD-DAKGTQIKRAARRLRDAADTVAYD 324
            E  L +LR+ LR + +  S+D R + F +PVD E+VPDY ++I HPMDLST+  KVD  +Y++   F  D+DLI +NA+EYNPD D    QI+  A  L+D    +  D
Sbjct:  628 EDTLRELRLFLRNVTERLSQDKRFKAFTKPVDVEEVPDYIKVIRHPMDLSTVLSKVDLHKYVTVREFVNDVDLIWKNALEYNPDSDPSDRQIRHRACALKDTTHAIIRD 736
[Close]
BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Match: A0A8C7KVN2_ONCKI (ATPase family AAA domain containing 2 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7KVN2_ONCKI)

HSP 1 Score: 94.4 bits (233), Expect = 3.460e-20
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLSTMADKVDAREYLSYETFAKDLDLITRNAIEYNPD-DAKGTQIKRAARRLRDAADTVAYD 324
            E  L +LR+ LR + +  S+D R + F +PVD E+VPDY ++I HPMDLST+  KVD  +Y++   F  D+DLI +NA+EYNPD D    QI+  A  L+D    +  D
Sbjct:  609 EDTLRELRLFLRNVTERLSQDKRFKAFTKPVDVEEVPDYIKVIRHPMDLSTVLSKVDLHKYVTVREFVNDVDLIWKNALEYNPDSDPSDRQIRHRACALKDTTHAIIRD 717
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81551.19084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812XIK8_9DINO4.710e-2957.02ATAD2 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A674BKM2_SALTR9.940e-2145.87ATPase family AAA domain-containing protein 2-like... [more]
A0A674BL91_SALTR1.000e-2045.87ATPase family AAA domain-containing protein 2-like... [more]
A0A1S3M1W2_SALSA1.020e-2045.87ATPase family AAA domain-containing protein 2-like... [more]
A0A061A745_ONCMY1.810e-2050.00Bromo domain-containing protein n=1 Tax=Oncorhynch... [more]
A0A8C7N784_ONCKI3.440e-2044.95ATPase family AAA domain containing 2 n=1 Tax=Onco... [more]
A0A8C7QEL0_ONCMY3.450e-2044.95Bromo domain-containing protein n=1 Tax=Oncorhynch... [more]
A0A8C7KQI9_ONCKI3.450e-2044.95ATPase family AAA domain containing 2 n=1 Tax=Onco... [more]
A0A8C7VLT4_ONCMY3.450e-2044.95Bromo domain-containing protein n=1 Tax=Oncorhynch... [more]
A0A8C7KVN2_ONCKI3.460e-2044.95ATPase family AAA domain containing 2 n=1 Tax=Onco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81551contigM-pyrifera_M_contig81551:292..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score99.0
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog8932.XP_005507367.1
Preferred nameATAD2
Hectar predicted targeting categoryother localisation
GOsGO:0001672,GO:0003674,GO:0003682,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010847,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031445,GO:0031935,GO:0031936,GO:0031974,GO:0031981,GO:0033043,GO:0033044,GO:0040029,GO:0042393,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044087,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045815,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0060968,GO:0060969,GO:0065007,GO:0070013,GO:0080090,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:1905268,GO:2000112,GO:2001141,GO:2001251
EggNOG free text desc.ATPase family AAA domain-containing protein
EggNOG OGs38E1N@33154,3BAXS@33208,3CSDF@33213,482TZ@7711,48Z64@7742,4GMPX@8782,COG0554@1,KOG0732@2759
COG Functional cat.O
Best tax levelAves
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.3161976-CDS-M-pyrifera_M_contig81551:291..6301622816722.3161976-CDS-M-pyrifera_M_contig81551:291..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81551 292..630 -
1692278140.4557874-CDS-M-pyrifera_M_contig81551:291..6301692278140.4557874-CDS-M-pyrifera_M_contig81551:291..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81551 292..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81551.19084.1prot_M-pyrifera_M_contig81551.19084.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81551 292..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81551.19084.1

>prot_M-pyrifera_M_contig81551.19084.1 ID=prot_M-pyrifera_M_contig81551.19084.1|Name=mRNA_M-pyrifera_M_contig81551.19084.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
ERQLAKLRIVLRAILDDFSKDPRLRPFARPVDPEDVPDYYEIISHPMDLS
TMADKVDAREYLSYETFAKDLDLITRNAIEYNPDDAKGTQIKRAARRLRD
AADTVAYDCDRRM
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mRNA from alignment at M-pyrifera_M_contig81551:292..630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81551.19084.1 ID=mRNA_M-pyrifera_M_contig81551.19084.1|Name=mRNA_M-pyrifera_M_contig81551.19084.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig81551:292..630- (Macrocystis pyrifera P11B4 male)
GAGCGTCAACTTGCAAAGTTGCGCATTGTGCTTCGTGCTATTCTTGATGA
CTTTTCCAAGGATCCAAGATTGCGACCATTTGCGAGACCAGTGGATCCAG
AAGATGTTCCAGATTACTATGAAATCATCTCGCATCCGATGGACCTGAGC
ACAATGGCTGACAAGGTTGATGCAAGAGAATACTTGTCATATGAAACCTT
CGCCAAAGACCTCGATCTTATCACACGAAACGCGATTGAATACAACCCGG
ATGATGCAAAAGGAACACAAATCAAACGTGCTGCTCGTCGTCTCCGTGAT
GCTGCTGATACAGTTGCATACGACTGTGACAGGAGGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81551:292..630-

>mRNA_M-pyrifera_M_contig81551.19084.1 ID=mRNA_M-pyrifera_M_contig81551.19084.1|Name=mRNA_M-pyrifera_M_contig81551.19084.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig81551:292..630- (Macrocystis pyrifera P11B4 male)
GAGCGTCAACTTGCAAAGTTGCGCATTGTGCTTCGTGCTATTCTTGATGA
CTTTTCCAAGGATCCAAGATTGCGACCATTTGCGAGACCAGTGGATCCAG
AAGATGTTCCAGATTACTATGAAATCATCTCGCATCCGATGGACCTGAGC
ACAATGGCTGACAAGGTTGATGCAAGAGAATACTTGTCATATGAAACCTT
CGCCAAAGACCTCGATCTTATCACACGAAACGCGATTGAATACAACCCGG
ATGATGCAAAAGGAACACAAATCAAACGTGCTGCTCGTCGTCTCCGTGAT
GCTGCTGATACAGTTGCATACGACTGTGACAGGAGGATGGAGCGTCAACT
TGCAAAGTTGCGCATTGTGCTTCGTGCTATTCTTGATGACTTTTCCAAGG
ATCCAAGATTGCGACCATTTGCGAGACCAGTGGATCCAGAAGATGTTCCA
GATTACTATGAAATCATCTCGCATCCGATGGACCTGAGCACAATGGCTGA
CAAGGTTGATGCAAGAGAATACTTGTCATATGAAACCTTCGCCAAAGACC
TCGATCTTATCACACGAAACGCGATTGAATACAACCCGGATGATGCAAAA
GGAACACAAATCAAACGTGCTGCTCGTCGTCTCCGTGATGCTGCTGATAC
AGTTGCATACGACTGTGACAGGAGGATG
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