mRNA_M-pyrifera_M_contig81540.19079.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81540.19079.1
Unique NamemRNA_M-pyrifera_M_contig81540.19079.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Match: A0A3C2B2N5_9ACTN (TVP38/TMEM64 family membrane protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B2N5_9ACTN)

HSP 1 Score: 68.2 bits (165), Expect = 6.340e-12
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   31 RW---AIAAAWVIGVVGVGLIARVKGLTPIELADAFGSAIEGSWWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWGT 264
            RW   AI A WV  V G  L  R  G +  E A        G+WW  AA+++   +RP+V FP +++TI AG++FGP+WGT
Sbjct:    5 RWKVAAIVAVWVALVAGWFLSLRGSGTSVGEAAQELVDRARGAWWAFAAYLVVAVVRPLVLFPATLVTIAAGMLFGPWWGT 85          
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Match: A0A7C3NCZ4_9CHLR (TVP38/TMEM64 family membrane protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3NCZ4_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 1.000e-10
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   19 RHRTRWAIAAAWVIGVVGVGLIARVKGLTPIELADAFGSAIEGSWWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWGTA 267
            RHR +  IA  W+I +            +P+  A +    ++ S +GP  F+  + +RP++ FP S+LTILAG +FGPFWG A
Sbjct:    9 RHRQKLIIATLWLIILGSYWGYLTYHNESPLITAQSLSQFLQKSIYGPFIFLAIFLIRPLILFPTSILTILAGFLFGPFWGVA 91          
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Match: A0A0M8K572_9CHLR (TVP38/TMEM64 family membrane protein n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0M8K572_9CHLR)

HSP 1 Score: 64.7 bits (156), Expect = 1.560e-10
Identity = 34/82 (41.46%), Postives = 44/82 (53.66%), Query Frame = 1
Query:   19 RHRTRWAIAAAWVIGVVGVGLIARVKGLTPIELADAFGSAIEGSWWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWGT 264
            RHR+R      W   +     IA   GL P E A      +  +  G  AF++ YTLRP++AFP   LT L+G +FGPFWGT
Sbjct:   17 RHRSRIIAFFFWGAAIFTYWGIAARNGLHPAETAHLLAKWVRETEVGLLAFMVFYTLRPLIAFPAIFLTALSGYLFGPFWGT 98          
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Match: A0A7V5UBI6_9GAMM (TVP38/TMEM64 family membrane protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V5UBI6_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 7.080e-10
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   16 LRHRTRWAIAAAWVIGVVGVGLIARVKGLTPIELADAFGSAIEG-SWWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWGT 264
            ++   RW + AA + G+V + L    +G    E   AF   I+G  W GP  FV+ Y L  V+ FPGSVLT+  G +FGP WGT
Sbjct:    1 MKRAVRWFVGAALIAGIVWMFLN---RGQWDAEQVQAF---IDGLGWAGPVVFVLLYALGTVLFFPGSVLTLAGGALFGPLWGT 78          
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Match: UPI001C3C4C80 (VTT domain-containing protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C4C80)

HSP 1 Score: 61.2 bits (147), Expect = 2.540e-9
Identity = 35/87 (40.23%), Postives = 45/87 (51.72%), Query Frame = 1
Query:    7 EAGLRHRTRWAIAAAWVIGVVGVGLIARVKGLTPIELADAFGSAIEGSWWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWGTA 267
             A  RHR      AAW + V  V   A V+ + P E A     AI+GS WGP AFV  Y +RP++    +VLT+  G +FG   G A
Sbjct:    2 RASTRHRLL--AGAAWALLVGAVVTWALVEDVGPAEAATRLVDAIQGSAWGPLAFVAVYLVRPLIFLSAAVLTVAGGFLFGAVGGVA 86          
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Match: A0A7K1B6N1_9ACTN (TVP38/TMEM64 family membrane protein n=2 Tax=root TaxID=1 RepID=A0A7K1B6N1_9ACTN)

HSP 1 Score: 60.8 bits (146), Expect = 4.230e-9
Identity = 30/83 (36.14%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   31 RWA----IAAAWVIGVVGVGLIARVKGLTPIELADAFGSAIEGSWWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWGTA 267
            RWA      AAW+   +   +  R  GL P++ A        G+WW    +++   LRP+V FP SV+T+ AG++FGP  G A
Sbjct:   19 RWARLAFAGAAWLSLAIAWIVYQRRSGLGPVDTAQELVDTARGNWWAIIGYLVISLLRPLVLFPASVVTVAAGLLFGPVVGVA 101          
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Match: UPI00034D081E (VTT domain-containing protein n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00034D081E)

HSP 1 Score: 59.7 bits (143), Expect = 1.030e-8
Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 1
Query:   31 RWAIAAAWVIGVVGVGLIARVKGLTPIELADAFGSAIEGSWWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWGTA 267
            R  + A W+  ++          L+  E+   F   +   WWG  A++  Y LRP+V FP SVLT++ G++FGP+ G A
Sbjct:   11 RIGVTALWIAAILLWRNHQTSNDLSTTEVGQRFLDNVGSEWWGVLAYIGVYLLRPLVLFPASVLTVMGGILFGPWLGVA 89          
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Match: A0A7W1TP72_9CHLR (TVP38/TMEM64 family membrane protein n=1 Tax=Herpetosiphonaceae bacterium TaxID=2720503 RepID=A0A7W1TP72_9CHLR)

HSP 1 Score: 59.3 bits (142), Expect = 1.560e-8
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   52 WVIGVVGVGLIARVKGLTPIELADAFGSAIEGSWWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWG 261
            W++ + G    A  K L+P+ +     + ++ + +G   FV+ YTLRP++ FP +VLT+ AG++FGP WG
Sbjct:   33 WLLLLGGYQWYALSKHLSPLAVLQQVITVLKSNMFGGLLFVVLYTLRPLILFPATVLTLGAGLVFGPVWG 102          
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Match: A0A7Y1ZWW2_9ACTN (TVP38/TMEM64 family membrane protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZWW2_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 4.390e-8
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:  112 ELADAFGSAIEGSWWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWG 261
            + A  F   +  +WWG  A+V  Y  RP+V FP SVLT++ GV+FGP++G
Sbjct:   59 DSAQQFIDDVGSAWWGVVAYVAVYLARPIVLFPASVLTVVGGVLFGPYFG 108          
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Match: A0A838IZ03_9DEIN (TVP38/TMEM64 family membrane protein n=1 Tax=Trueperaceae bacterium TaxID=2026798 RepID=A0A838IZ03_9DEIN)

HSP 1 Score: 57.8 bits (138), Expect = 6.170e-8
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   46 AAWVIGVVGVGLIARVKGLTPIELADAFGSAIEGSWWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWGTA 267
            AAW + VV   ++    G +P+++  A  + ++    G  AFVIAY LRP++ F  S+LTI AG+++GP  G A
Sbjct:   21 AAWALAVVAYVVVVTRSGASPLDVLAALLAFLQDHPLGAIAFVIAYMLRPLLLFSASLLTIGAGLLYGPLLGFA 94          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81540.19079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B2N5_9ACTN6.340e-1241.98TVP38/TMEM64 family membrane protein n=1 Tax=Acidi... [more]
A0A7C3NCZ4_9CHLR1.000e-1037.35TVP38/TMEM64 family membrane protein n=1 Tax=Anaer... [more]
A0A0M8K572_9CHLR1.560e-1041.46TVP38/TMEM64 family membrane protein n=2 Tax=Arden... [more]
A0A7V5UBI6_9GAMM7.080e-1041.67TVP38/TMEM64 family membrane protein n=1 Tax=Chrom... [more]
UPI001C3C4C802.540e-940.23VTT domain-containing protein n=1 Tax=Miltoncostae... [more]
A0A7K1B6N1_9ACTN4.230e-936.14TVP38/TMEM64 family membrane protein n=2 Tax=root ... [more]
UPI00034D081E1.030e-834.18VTT domain-containing protein n=1 Tax=Ilumatobacte... [more]
A0A7W1TP72_9CHLR1.560e-837.14TVP38/TMEM64 family membrane protein n=1 Tax=Herpe... [more]
A0A7Y1ZWW2_9ACTN4.390e-846.00TVP38/TMEM64 family membrane protein n=1 Tax=Iluma... [more]
A0A838IZ03_9DEIN6.170e-839.19TVP38/TMEM64 family membrane protein n=1 Tax=Truep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81540contigM-pyrifera_M_contig81540:661..927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003600.1
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.1389613-CDS-M-pyrifera_M_contig81540:660..9271622816722.1389613-CDS-M-pyrifera_M_contig81540:660..927Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81540 661..927 +
1692278140.366266-CDS-M-pyrifera_M_contig81540:660..9271692278140.366266-CDS-M-pyrifera_M_contig81540:660..927Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81540 661..927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81540.19079.1prot_M-pyrifera_M_contig81540.19079.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81540 661..927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81540.19079.1

>prot_M-pyrifera_M_contig81540.19079.1 ID=prot_M-pyrifera_M_contig81540.19079.1|Name=mRNA_M-pyrifera_M_contig81540.19079.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MSEAGLRHRTRWAIAAAWVIGVVGVGLIARVKGLTPIELADAFGSAIEGS
WWGPAAFVIAYTLRPVVAFPGSVLTILAGVIFGPFWGTA
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mRNA from alignment at M-pyrifera_M_contig81540:661..927+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81540.19079.1 ID=mRNA_M-pyrifera_M_contig81540.19079.1|Name=mRNA_M-pyrifera_M_contig81540.19079.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig81540:661..927+ (Macrocystis pyrifera P11B4 male)
ATGTCTGAGGCGGGACTTCGCCATCGCACCCGCTGGGCCATCGCCGCTGC ATGGGTGATCGGAGTGGTGGGCGTGGGGTTGATCGCTCGGGTGAAGGGCC TCACGCCGATCGAACTCGCCGATGCATTCGGTTCGGCGATCGAGGGCAGC TGGTGGGGCCCGGCTGCGTTCGTGATCGCGTATACCCTGCGGCCGGTCGT CGCTTTCCCCGGGTCGGTGCTGACCATCCTCGCCGGTGTGATCTTCGGCC CGTTCTGGGGCACGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81540:661..927+

>mRNA_M-pyrifera_M_contig81540.19079.1 ID=mRNA_M-pyrifera_M_contig81540.19079.1|Name=mRNA_M-pyrifera_M_contig81540.19079.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig81540:661..927+ (Macrocystis pyrifera P11B4 male)
ATGTCTGAGGCGGGACTTCGCCATCGCACCCGCTGGGCCATCGCCGCTGC
ATGGGTGATCGGAGTGGTGGGCGTGGGGTTGATCGCTCGGGTGAAGGGCC
TCACGCCGATCGAACTCGCCGATGCATTCGGTTCGGCGATCGAGGGCAGC
TGGTGGGGCCCGGCTGCGTTCGTGATCGCGTATACCCTGCGGCCGGTCGT
CGCTTTCCCCGGGTCGGTGCTGACCATCCTCGCCGGTGTGATCTTCGGCC
CGTTCTGGGGCACGGCGATGTCTGAGGCGGGACTTCGCCATCGCACCCGC
TGGGCCATCGCCGCTGCATGGGTGATCGGAGTGGTGGGCGTGGGGTTGAT
CGCTCGGGTGAAGGGCCTCACGCCGATCGAACTCGCCGATGCATTCGGTT
CGGCGATCGAGGGCAGCTGGTGGGGCCCGGCTGCGTTCGTGATCGCGTAT
ACCCTGCGGCCGGTCGTCGCTTTCCCCGGGTCGGTGCTGACCATCCTCGC
CGGTGTGATCTTCGGCCCGTTCTGGGGCACGGCG
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