mRNA_M-pyrifera_M_contig81537.19075.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81537.19075.1
Unique NamemRNA_M-pyrifera_M_contig81537.19075.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Match: D7FV43_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV43_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 7.310e-19
Identity = 34/38 (89.47%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 GWDEGVPRMSLGEKAVLRCTSDYAYGPQGAGGVIPPNA 114
            GWDEGVP+MSLGEKA+L+CTSDYAYGP+GAGGVIPPNA
Sbjct:   59 GWDEGVPQMSLGEKAILKCTSDYAYGPEGAGGVIPPNA 96
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BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Match: A0A7S4UZB0_9DINO (Peptidylprolyl isomerase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UZB0_9DINO)

HSP 1 Score: 79.7 bits (195), Expect = 6.350e-18
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 GWDEGVPRMSLGEKAVLRCTSDYAYGPQGAGGVIPPNAGKTDPSHNLQ 144
            GWDEGVP+MSLGEKAVL+ TSDY YGPQGAGGVIPPNA  T   H L+
Sbjct:   79 GWDEGVPKMSLGEKAVLQMTSDYGYGPQGAGGVIPPNADLTFAVHLLK 126
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BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Match: A0A7S2MD69_9STRA (Peptidylprolyl isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MD69_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 8.150e-16
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 GWDEGVPRMSLGEKAVLRCTSDYAYGPQGAGGVIPPNA 114
            GWDEGV +MSLGEKA+LR TSDY YGP+GAGGVIPPNA
Sbjct:   60 GWDEGVAQMSLGEKAILRITSDYGYGPRGAGGVIPPNA 97
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BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Match: A0A6U6YDL3_9DINO (Peptidylprolyl isomerase n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A6U6YDL3_9DINO)

HSP 1 Score: 73.2 bits (178), Expect = 3.470e-15
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 GWDEGVPRMSLGEKAVLRCTSDYAYGPQGAGGVIPPNAGKT 123
            GWDEGVP MSLGEKA+LR TSDY YG  GAGGVIPPNA  T
Sbjct:   95 GWDEGVPAMSLGEKAILRMTSDYGYGASGAGGVIPPNADLT 135
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BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Match: A0A7S4V7C6_9DINO (Peptidylprolyl isomerase n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V7C6_9DINO)

HSP 1 Score: 72.0 bits (175), Expect = 8.750e-15
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 GWDEGVPRMSLGEKAVLRCTSDYAYGPQGAGGVIPPNAGKT 123
            GWDEGVP+MSLGEKA+LR TSD+ YG  GAGGVIPPNA  T
Sbjct:   90 GWDEGVPQMSLGEKAILRMTSDFGYGAAGAGGVIPPNADLT 130
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BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Match: A0A812UMS3_9DINO (Peptidylprolyl isomerase n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UMS3_9DINO)

HSP 1 Score: 70.5 bits (171), Expect = 9.040e-15
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 GWDEGVPRMSLGEKAVLRCTSDYAYGPQGAGGVIPPNAGKT 123
            GWDEGVP MSLGEKA+LR TSDY YG +GAG VIPPNA  T
Sbjct:   35 GWDEGVPTMSLGEKAILRMTSDYGYGSRGAGRVIPPNADLT 75
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BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Match: A0A7S2P014_9DINO (Peptidylprolyl isomerase n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2P014_9DINO)

HSP 1 Score: 71.2 bits (173), Expect = 2.010e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 GWDEGVPRMSLGEKAVLRCTSDYAYGPQGAGGVIPPNAGKT 123
            GWDEGVP MSLGEKAVL+ TSD+ YG +GAGGVIPPNA  T
Sbjct:   96 GWDEGVPTMSLGEKAVLKMTSDFGYGARGAGGVIPPNADLT 136
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BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Match: A0A7S4UG99_9DINO (Peptidylprolyl isomerase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UG99_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 2.420e-14
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 GWDEGVPRMSLGEKAVLRCTSDYAYGPQGAGGVIPPNAGKT 123
            GWDEGVP+MSLGEKA+LR TSD+ YG  GAGGVIPP+A  T
Sbjct:   60 GWDEGVPQMSLGEKAILRMTSDFGYGAAGAGGVIPPSADLT 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Match: A0A7S4K440_9STRA (Peptidylprolyl isomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K440_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.420e-14
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GWDEGVPRMSLGEKAVLRCTSDYAYGPQGAGGVIPPNA 114
            GWDEGV  MSLGEK+VL  TSDY YGP+GAGGVIPPNA
Sbjct:   60 GWDEGVMTMSLGEKSVLHITSDYGYGPRGAGGVIPPNA 97
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BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Match: A0A7S1S9V4_ALECA (Peptidylprolyl isomerase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1S9V4_ALECA)

HSP 1 Score: 71.2 bits (173), Expect = 2.500e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 GWDEGVPRMSLGEKAVLRCTSDYAYGPQGAGGVIPPNAGKT 123
            GWDEGVP MSLGE+AVL+ TSD+ YG QGAGGVIPPNA  T
Sbjct:  106 GWDEGVPTMSLGEQAVLKMTSDFGYGAQGAGGVIPPNADLT 146
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81537.19075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV43_ECTSI7.310e-1989.47Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S4UZB0_9DINO6.350e-1877.08Peptidylprolyl isomerase n=1 Tax=Alexandrium monil... [more]
A0A7S2MD69_9STRA8.150e-1684.21Peptidylprolyl isomerase n=1 Tax=Helicotheca tames... [more]
A0A6U6YDL3_9DINO3.470e-1580.49Peptidylprolyl isomerase n=1 Tax=Alexandrium ander... [more]
A0A7S4V7C6_9DINO8.750e-1578.05Peptidylprolyl isomerase n=3 Tax=Alexandrium monil... [more]
A0A812UMS3_9DINO9.040e-1578.05Peptidylprolyl isomerase n=1 Tax=Symbiodinium nata... [more]
A0A7S2P014_9DINO2.010e-1478.05Peptidylprolyl isomerase n=1 Tax=Brandtodinium nut... [more]
A0A7S4UG99_9DINO2.420e-1475.61Peptidylprolyl isomerase n=1 Tax=Alexandrium monil... [more]
A0A7S4K440_9STRA2.420e-1481.58Peptidylprolyl isomerase n=1 Tax=Odontella aurita ... [more]
A0A7S1S9V4_ALECA2.500e-1478.05Peptidylprolyl isomerase n=1 Tax=Alexandrium caten... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81537contigM-pyrifera_M_contig81537:277..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D7FV43
KEGG koko:K09568
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGsCOG0545@1,KOG0544@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Exons1
Model size150
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.9494805-UTR-M-pyrifera_M_contig81537:276..3001622816721.9494805-UTR-M-pyrifera_M_contig81537:276..300Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81537 277..300 +
1692278140.2457597-UTR-M-pyrifera_M_contig81537:276..3001692278140.2457597-UTR-M-pyrifera_M_contig81537:276..300Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81537 277..300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.9632313-CDS-M-pyrifera_M_contig81537:300..4261622816721.9632313-CDS-M-pyrifera_M_contig81537:300..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81537 301..426 +
1692278140.2721324-CDS-M-pyrifera_M_contig81537:300..4261692278140.2721324-CDS-M-pyrifera_M_contig81537:300..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81537 301..426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81537.19075.1prot_M-pyrifera_M_contig81537.19075.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81537 301..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81537.19075.1

>prot_M-pyrifera_M_contig81537.19075.1 ID=prot_M-pyrifera_M_contig81537.19075.1|Name=mRNA_M-pyrifera_M_contig81537.19075.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
MSLGEKAVLRCTSDYAYGPQGAGGVIPPNAGKTDPSHNLQH*
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mRNA from alignment at M-pyrifera_M_contig81537:277..426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81537.19075.1 ID=mRNA_M-pyrifera_M_contig81537.19075.1|Name=mRNA_M-pyrifera_M_contig81537.19075.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig81537:277..426+ (Macrocystis pyrifera P11B4 male)
GGTTGGGATGAGGGCGTGCCTAGGATGTCCCTCGGAGAGAAGGCCGTCCT
CCGCTGCACTTCCGACTACGCGTACGGCCCCCAGGGTGCCGGTGGGGTTA
TTCCACCTAACGCCGGTAAGACAGACCCTTCTCATAACCTGCAGCACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81537:277..426+

>mRNA_M-pyrifera_M_contig81537.19075.1 ID=mRNA_M-pyrifera_M_contig81537.19075.1|Name=mRNA_M-pyrifera_M_contig81537.19075.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig81537:277..426+ (Macrocystis pyrifera P11B4 male)
ATGTCCCTCGGAGAGAAGGCCGTCCTCCGCTGCACTTCCGACTACGCGTA
CGGCCCCCAGGGTGCCGGTGGGGTTATTCCACCTAACGCCGGTAAGACAG
ACCCTTCTCATAACCTGCAGCACTAGATGTCCCTCGGAGAGAAGGCCGTC
CTCCGCTGCACTTCCGACTACGCGTACGGCCCCCAGGGTGCCGGTGGGGT
TATTCCACCTAACGCCGGTAAGACAGACCCTTCTCATAACCTGCAGCACT
AG
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