mRNA_M-pyrifera_M_contig81527.19074.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81527.19074.1
Unique NamemRNA_M-pyrifera_M_contig81527.19074.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Match: D8LHF5_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 8.630e-17
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 VGLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGDDR 114
            VGLIQLISC TAGKALQLSCHMLEGTICD+IRHCGDDR
Sbjct:  906 VGLIQLISCDTAGKALQLSCHMLEGTICDIIRHCGDDR 943
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BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Match: A0A6A5ACD0_9STRA (Lipase_3 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ACD0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.200e-9
Identity = 23/37 (62.16%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    4 GLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGDDR 114
            GLIQ I+C T   ++QLSCHM++GT+C+L++HCGDDR
Sbjct:  140 GLIQRITCDTPHLSMQLSCHMIQGTLCNLLQHCGDDR 176
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BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Match: A0A024GSX6_9STRA (Lipase_3 domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GSX6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-9
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 VGLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGD 108
            VGLIQ ISC+T   ++QLSCHMLEGT+C+L+ HCGD
Sbjct:  777 VGLIQKISCATPHLSMQLSCHMLEGTLCNLLEHCGD 812
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BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Match: A0A6G0XXD1_9STRA (Lipase_3 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXD1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.480e-9
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 GLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGDDR 114
            GLIQ I+C T   ++QLSCHM++GT+C+L+ HCGDDR
Sbjct:  740 GLIQRITCDTPHLSMQLSCHMIQGTLCNLLHHCGDDR 776
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BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Match: A0A8K1FCC7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCC7_PYTOL)

HSP 1 Score: 59.3 bits (142), Expect = 3.380e-9
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 GLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGDDR 114
            G+IQ ISC+T   ++QLSCHMLEGT+C+L+ HCGD R
Sbjct:  810 GMIQKISCNTPHLSMQLSCHMLEGTLCNLLEHCGDAR 846
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BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Match: F0VYR6_9STRA (Transmembrane protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYR6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.380e-9
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 GLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGDDR 114
            GLIQ ISC+T   ++QLSCHMLEGT+C+L+ HCGD +
Sbjct:  755 GLIQKISCATPHLSMQLSCHMLEGTLCNLLEHCGDHK 791
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BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Match: K3WLR8_GLOUD (Lipase_3 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLR8_GLOUD)

HSP 1 Score: 58.9 bits (141), Expect = 4.630e-9
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    4 GLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGD 108
            GLIQ ISC T   ++QLSCHMLEGT+C+L+ HCGD
Sbjct:  739 GLIQKISCDTPHLSMQLSCHMLEGTVCNLLEHCGD 773
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BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Match: A0A485KXN8_9STRA (Aste57867_12985 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXN8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.630e-9
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 GLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGDDR 114
            GLIQ I+C T   ++QLSCHM++GT+C+L+ HCGDDR
Sbjct:  742 GLIQRITCDTPHLSMQLSCHMIQGTLCNLLDHCGDDR 778
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BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Match: A0A7S2V565_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V565_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.290e-9
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 VGLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGDDR 114
            VGL+Q I CS++  A+Q +CHM+EGT+C+L+ HCGD R
Sbjct:   56 VGLVQHIMCSSSRLAIQNACHMIEGTLCELLSHCGDPR 93
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BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Match: A0A3M6VSC6_9STRA (Lipase_3 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSC6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.180e-8
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    4 GLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGDDR 114
            G+IQ ISC T   ++QLSCHMLEGTIC+L+ HCG  R
Sbjct:  827 GMIQKISCDTPHLSMQLSCHMLEGTICNLVEHCGSAR 863
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81527.19074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHF5_ECTSI8.630e-1794.74Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6A5ACD0_9STRA1.200e-962.16Lipase_3 domain-containing protein n=1 Tax=Aphanom... [more]
A0A024GSX6_9STRA1.320e-969.44Lipase_3 domain-containing protein n=2 Tax=Albugo ... [more]
A0A6G0XXD1_9STRA2.480e-962.16Lipase_3 domain-containing protein n=1 Tax=Aphanom... [more]
A0A8K1FCC7_PYTOL3.380e-964.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0VYR6_9STRA3.380e-964.86Transmembrane protein putative n=1 Tax=Albugo laib... [more]
K3WLR8_GLOUD4.630e-968.57Lipase_3 domain-containing protein n=1 Tax=Globisp... [more]
A0A485KXN8_9STRA4.630e-962.16Aste57867_12985 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2V565_9STRA8.290e-957.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3M6VSC6_9STRA1.180e-864.86Lipase_3 domain-containing protein n=1 Tax=Peronos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81527contigM-pyrifera_M_contig81527:429..545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue3.3e-13
Seed eggNOG ortholog2880.D8LHF5
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K17900
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04138,map00561,map01100,map04138
KEGG ModuleM00098
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Lipase (class 3)
EggNOG OGs2DUDU@1,2QVZS@2759
EC3.1.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.9122934-CDS-M-pyrifera_M_contig81527:428..5451622816721.9122934-CDS-M-pyrifera_M_contig81527:428..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81527 429..545 +
1692278140.2243533-CDS-M-pyrifera_M_contig81527:428..5451692278140.2243533-CDS-M-pyrifera_M_contig81527:428..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81527 429..545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81527.19074.1prot_M-pyrifera_M_contig81527.19074.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81527 429..545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81527.19074.1

>prot_M-pyrifera_M_contig81527.19074.1 ID=prot_M-pyrifera_M_contig81527.19074.1|Name=mRNA_M-pyrifera_M_contig81527.19074.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
VGLIQLISCSTAGKALQLSCHMLEGTICDLIRHCGDDR*
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mRNA from alignment at M-pyrifera_M_contig81527:429..545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81527.19074.1 ID=mRNA_M-pyrifera_M_contig81527.19074.1|Name=mRNA_M-pyrifera_M_contig81527.19074.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=117bp|location=Sequence derived from alignment at M-pyrifera_M_contig81527:429..545+ (Macrocystis pyrifera P11B4 male)
GTTGGGCTGATCCAGCTAATTTCTTGCAGCACGGCCGGGAAGGCGCTTCA
GCTGAGCTGCCACATGCTGGAGGGCACGATTTGCGACTTAATCAGGCACT
GTGGAGACGACAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81527:429..545+

>mRNA_M-pyrifera_M_contig81527.19074.1 ID=mRNA_M-pyrifera_M_contig81527.19074.1|Name=mRNA_M-pyrifera_M_contig81527.19074.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig81527:429..545+ (Macrocystis pyrifera P11B4 male)
GTTGGGCTGATCCAGCTAATTTCTTGCAGCACGGCCGGGAAGGCGCTTCA
GCTGAGCTGCCACATGCTGGAGGGCACGATTTGCGACTTAATCAGGCACT
GTGGAGACGACAGGTGAGTTGGGCTGATCCAGCTAATTTCTTGCAGCACG
GCCGGGAAGGCGCTTCAGCTGAGCTGCCACATGCTGGAGGGCACGATTTG
CGACTTAATCAGGCACTGTGGAGACGACAGGTGA
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