mRNA_M-pyrifera_M_contig81489.19066.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81489.19066.1
Unique NamemRNA_M-pyrifera_M_contig81489.19066.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81489.19066.1 vs. uniprot
Match: A0A847L4R5_9BACT (AraC family transcriptional regulator n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A847L4R5_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 2.920e-5
Identity = 29/112 (25.89%), Postives = 55/112 (49.11%), Query Frame = 1 
Query:   40 IGLVLSVIMAIAFGLESKKRFANFWFTCFLIASAVVFIVKLLYSTGQIVNYPHWFKLNYPAGILRPVFFYLYIDFLLNGSTRIKTKYFLHFIPFALLSIYLLPFFQMDEAYK 375
            +G+ LS+ +A     +  K  ++     +++  A+      L+  G  V YPH   + +P  +L     YLY+ F L    R + K ++HF+PF +  ++++PFF +    K
Sbjct:    7 VGIFLSLFLATLLLTKRNKSLSDNILGAWMLVMAIHLSSYYLHYLGYWVKYPHLVGIAHPFPLLYGPLLYLYVVFSLRSDQRWRWKDWMHFLPFVVTYLFMIPFFSLSAEQK 118
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81489.19066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A847L4R5_9BACT2.920e-525.89AraC family transcriptional regulator n=1 Tax=Bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81489contigM-pyrifera_M_contig81489:183..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue7e-07
Seed eggNOG ortholog1317122.ATO12_00370
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.helix_turn_helix, arabinose operon control protein
EggNOG OGs1HZK0@117743,2YJGH@290174,4NIJV@976,COG2207@1,COG2207@2
COG Functional cat.K
Best tax levelAquimarina
Best eggNOG OGNA|NA|NA
Exons1
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.5280979-CDS-M-pyrifera_M_contig81489:182..5811622816721.5280979-CDS-M-pyrifera_M_contig81489:182..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81489 183..581 -
1692278140.0003755-CDS-M-pyrifera_M_contig81489:182..5811692278140.0003755-CDS-M-pyrifera_M_contig81489:182..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81489 183..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81489.19066.1prot_M-pyrifera_M_contig81489.19066.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81489 183..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81489.19066.1

>prot_M-pyrifera_M_contig81489.19066.1 ID=prot_M-pyrifera_M_contig81489.19066.1|Name=mRNA_M-pyrifera_M_contig81489.19066.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MDLRLNFNELLLLIGLVLSVIMAIAFGLESKKRFANFWFTCFLIASAVVF
IVKLLYSTGQIVNYPHWFKLNYPAGILRPVFFYLYIDFLLNGSTRIKTKY
FLHFIPFALLSIYLLPFFQMDEAYKVDVLYRRI
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mRNA from alignment at M-pyrifera_M_contig81489:183..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81489.19066.1 ID=mRNA_M-pyrifera_M_contig81489.19066.1|Name=mRNA_M-pyrifera_M_contig81489.19066.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig81489:183..581- (Macrocystis pyrifera P11B4 male)
ATGGACTTAAGGTTAAACTTCAATGAGCTTTTGTTACTTATAGGATTAGT
TCTATCAGTGATTATGGCGATTGCATTTGGATTAGAGTCTAAAAAGCGAT
TCGCAAATTTCTGGTTTACATGTTTCCTAATTGCTAGTGCCGTCGTTTTT
ATTGTAAAACTCCTGTATTCAACTGGACAAATTGTAAACTATCCGCACTG
GTTTAAGCTAAACTATCCGGCAGGTATATTACGACCAGTATTTTTCTATC
TCTACATAGACTTCTTGTTAAATGGCTCAACAAGGATCAAAACAAAGTAT
TTTTTACATTTTATTCCTTTTGCATTGCTTTCAATTTATCTACTACCATT
TTTTCAAATGGATGAGGCCTACAAAGTAGATGTTTTATACCGACGGATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81489:183..581-

>mRNA_M-pyrifera_M_contig81489.19066.1 ID=mRNA_M-pyrifera_M_contig81489.19066.1|Name=mRNA_M-pyrifera_M_contig81489.19066.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig81489:183..581- (Macrocystis pyrifera P11B4 male)
ATGGACTTAAGGTTAAACTTCAATGAGCTTTTGTTACTTATAGGATTAGT
TCTATCAGTGATTATGGCGATTGCATTTGGATTAGAGTCTAAAAAGCGAT
TCGCAAATTTCTGGTTTACATGTTTCCTAATTGCTAGTGCCGTCGTTTTT
ATTGTAAAACTCCTGTATTCAACTGGACAAATTGTAAACTATCCGCACTG
GTTTAAGCTAAACTATCCGGCAGGTATATTACGACCAGTATTTTTCTATC
TCTACATAGACTTCTTGTTAAATGGCTCAACAAGGATCAAAACAAAGTAT
TTTTTACATTTTATTCCTTTTGCATTGCTTTCAATTTATCTACTACCATT
TTTTCAAATGGATGAGGCCTACAAAGTAGATGTTTTATACCGACGGATAA
TGGACTTAAGGTTAAACTTCAATGAGCTTTTGTTACTTATAGGATTAGTT
CTATCAGTGATTATGGCGATTGCATTTGGATTAGAGTCTAAAAAGCGATT
CGCAAATTTCTGGTTTACATGTTTCCTAATTGCTAGTGCCGTCGTTTTTA
TTGTAAAACTCCTGTATTCAACTGGACAAATTGTAAACTATCCGCACTGG
TTTAAGCTAAACTATCCGGCAGGTATATTACGACCAGTATTTTTCTATCT
CTACATAGACTTCTTGTTAAATGGCTCAACAAGGATCAAAACAAAGTATT
TTTTACATTTTATTCCTTTTGCATTGCTTTCAATTTATCTACTACCATTT
TTTCAAATGGATGAGGCCTACAAAGTAGATGTTTTATACCGACGGATA
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