mRNA_M-pyrifera_M_contig81484.19063.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81484.19063.1
Unique NamemRNA_M-pyrifera_M_contig81484.19063.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig81484.19063.1 vs. uniprot
Match: A0A518A2E4_9PLAN (Uncharacterized protein n=13 Tax=Gimesia TaxID=1649453 RepID=A0A518A2E4_9PLAN)

HSP 1 Score: 86.7 bits (213), Expect = 3.610e-18
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 DEELQADFNLDKNPLPEDGVDLMDAPSRLEDLFANPLSKQKKKTVKKKXAA 153
            DEELQ DF+LDK+PLPE+GVDLMDAPSRLE LFANPLSKQKKKTVKKK AA
Sbjct:  203 DEELQVDFDLDKHPLPEEGVDLMDAPSRLEALFANPLSKQKKKTVKKKKAA 253
[Close]
BLAST of mRNA_M-pyrifera_M_contig81484.19063.1 vs. uniprot
Match: A0A350K6E7_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K6E7_9PLAN)

HSP 1 Score: 73.2 bits (178), Expect = 1.200e-14
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 DEELQADFNLDKNPLPEDGVDLMDAPSRLEDLFANPLSKQKKKTVK 138
            DEEL ADFNL KNPLPE+GV+LMDAPSR+E +FA+PLSKQKKK VK
Sbjct:    1 DEELAADFNLVKNPLPEEGVNLMDAPSRMEAMFADPLSKQKKKVVK 46
[Close]
BLAST of mRNA_M-pyrifera_M_contig81484.19063.1 vs. uniprot
Match: A6CF41_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6CF41_9PLAN)

HSP 1 Score: 75.1 bits (183), Expect = 7.270e-14
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 DEELQADFNLDKNPLPEDGVDLMDAPSRLEDLFANPLSKQKKKTVK 138
            DEEL ADFNL KNPLPE+GV+LMDAPSR+E +FANPLSKQKKK VK
Sbjct:  203 DEELAADFNLVKNPLPEEGVNLMDAPSRMEAMFANPLSKQKKKVVK 248
[Close]
BLAST of mRNA_M-pyrifera_M_contig81484.19063.1 vs. uniprot
Match: A0A518I883_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I883_9PLAN)

HSP 1 Score: 71.6 bits (174), Expect = 1.380e-12
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 DEELQADFNLDKNPLPEDGVDLMDAPSRLEDLFANPLSKQKK 126
            DEEL ADFNL KNPLPE+GVDLM APSRLE +FANPLSKQKK
Sbjct:  203 DEELAADFNLAKNPLPEEGVDLMQAPSRLEGMFANPLSKQKK 244
[Close]
BLAST of mRNA_M-pyrifera_M_contig81484.19063.1 vs. uniprot
Match: A0A517W195_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W195_9PLAN)

HSP 1 Score: 70.5 bits (171), Expect = 3.640e-12
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 DEELQADFNLDKNPLPEDGVDLMDAPSRLEDLFANPLSKQKKKTVK 138
            DEEL ADFNL KNPLPE+GVDL  AP R+E+LFANPLSKQKK+  K
Sbjct:  203 DEELAADFNLVKNPLPEEGVDLKQAPGRMEELFANPLSKQKKRVTK 248
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81484.19063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A518A2E4_9PLAN3.610e-1888.24Uncharacterized protein n=13 Tax=Gimesia TaxID=164... [more]
A0A350K6E7_9PLAN1.200e-1480.43Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A6CF41_9PLAN7.270e-1482.61Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A518I883_9PLAN1.380e-1285.71Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517W195_9PLAN3.640e-1276.09Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81484contigM-pyrifera_M_contig81484:613..927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score77.0
Seed ortholog evalue5.7e-12
Seed eggNOG ortholog344747.PM8797T_17749
Preferred namenth
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
EggNOG OGs2IZDJ@203682,COG0177@1,COG0177@2
EC4.2.99.18
COG Functional cat.L
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.4053373-CDS-M-pyrifera_M_contig81484:612..9271622816721.4053373-CDS-M-pyrifera_M_contig81484:612..927Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81484 613..927 -
1692278139.944823-CDS-M-pyrifera_M_contig81484:612..9271692278139.944823-CDS-M-pyrifera_M_contig81484:612..927Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81484 613..927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81484.19063.1prot_M-pyrifera_M_contig81484.19063.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81484 613..927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81484.19063.1

>prot_M-pyrifera_M_contig81484.19063.1 ID=prot_M-pyrifera_M_contig81484.19063.1|Name=mRNA_M-pyrifera_M_contig81484.19063.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
DEELQADFNLDKNPLPEDGVDLMDAPSRLEDLFANPLSKQKKKTVKKKKA
AVKGKKAVTKVKKKVPAKKTKSVKKAVKKTAAKTSATKKTTKKKVPKKSS
STKK*
back to top

mRNA from alignment at M-pyrifera_M_contig81484:613..927-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81484.19063.1 ID=mRNA_M-pyrifera_M_contig81484.19063.1|Name=mRNA_M-pyrifera_M_contig81484.19063.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig81484:613..927- (Macrocystis pyrifera P11B4 male)
GATGAAGAACTGCAAGCTGATTTTAATCTGGATAAGAATCCGCTGCCCGA
GGATGGCGTGGATCTGATGGATGCTCCCAGTCGGCTGGAAGATCTGTTTG
CCAATCCGCTGTCGAAGCAGAAAAAGAAGACAGTGAAGAAAAAGAAGGCT
GCTGTCAAAGGCAAGAAGGCGGTCACCAAAGTCAAAAAGAAGGTTCCAGC
CAAAAAGACCAAGTCAGTTAAAAAGGCTGTGAAGAAAACGGCTGCCAAGA
CCTCAGCGACAAAAAAGACCACCAAAAAGAAGGTGCCGAAGAAGTCTTCG
TCGACTAAAAAATAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81484:613..927-

>mRNA_M-pyrifera_M_contig81484.19063.1 ID=mRNA_M-pyrifera_M_contig81484.19063.1|Name=mRNA_M-pyrifera_M_contig81484.19063.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig81484:613..927- (Macrocystis pyrifera P11B4 male)
GATGAAGAACTGCAAGCTGATTTTAATCTGGATAAGAATCCGCTGCCCGA
GGATGGCGTGGATCTGATGGATGCTCCCAGTCGGCTGGAAGATCTGTTTG
CCAATCCGCTGTCGAAGCAGAAAAAGAAGACAGTGAAGAAAAAGAAGGCT
GCTGTCAAAGGCAAGAAGGCGGTCACCAAAGTCAAAAAGAAGGTTCCAGC
CAAAAAGACCAAGTCAGTTAAAAAGGCTGTGAAGAAAACGGCTGCCAAGA
CCTCAGCGACAAAAAAGACCACCAAAAAGAAGGTGCCGAAGAAGTCTTCG
TCGACTAAAAAATAGGATGAAGAACTGCAAGCTGATTTTAATCTGGATAA
GAATCCGCTGCCCGAGGATGGCGTGGATCTGATGGATGCTCCCAGTCGGC
TGGAAGATCTGTTTGCCAATCCGCTGTCGAAGCAGAAAAAGAAGACAGTG
AAGAAAAAGAAGGCTGCTGTCAAAGGCAAGAAGGCGGTCACCAAAGTCAA
AAAGAAGGTTCCAGCCAAAAAGACCAAGTCAGTTAAAAAGGCTGTGAAGA
AAACGGCTGCCAAGACCTCAGCGACAAAAAAGACCACCAAAAAGAAGGTG
CCGAAGAAGTCTTCGTCGACTAAAAAATAG
back to top