mRNA_M-pyrifera_M_contig81439.19046.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81439.19046.1
Unique NamemRNA_M-pyrifera_M_contig81439.19046.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81439.19046.1 vs. uniprot
Match: A0A2E7KG59_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KG59_9PLAN)

HSP 1 Score: 628 bits (1620), Expect = 2.160e-218
Identity = 307/310 (99.03%), Postives = 309/310 (99.68%), Query Frame = 1 
Query:    1 PGYGQIGVTDSGLLLYWPKSHTGAQLLAFGIPQLNGRNICWKTGIPDQGRISLLTGDLQNSELQLVHIDLEQKSVTHTPIELKQMEFTAICAHHGFLFLVNETFNTIIAIDPATGERVGSSHYSSDLILACDRFFRTIDRSQWLALSFDISRGQPVMTEFNLGTVNPSDVVTIFERDPDIGPVCILWKGGKIYFPAREELKTIPVMDSVKVESISSEDISTDGQIVAIKLDNTFSWDRCVLNLYSMQAELKPARPDIQKWIDQPAHWKNSGRNIRKKFMGILVTESGELVLKTTKQSTLRISYQPDLKYI 930
            PGYGQIGVTDSGLLLYWPKSHTGAQLLAFGIPQLNGRNICWKTGIPDQGRISLLTGDLQNSELQLVHIDLEQKSVTHTPIELKQMEFTAICAHHGFLFLVNETFNTIIAIDPATGERVGSSHYSSDLILACDRFFRTIDR QWLALSFDISRGQPVMTEF+LGTVNPSDVVTIFERDPDIGPVCILWKGGKIYFPAREELKTIPVMDSVKVESISSEDISTDGQIVAIKLDNTFSWDRCVLNLYSMQAELKPARPDIQKWIDQPAHWKNSGRNIRKKFMGILVTESGELVLKTTKQSTLRISYQP+LKYI
Sbjct:  512 PGYGQIGVTDSGLLLYWPKSHTGAQLLAFGIPQLNGRNICWKTGIPDQGRISLLTGDLQNSELQLVHIDLEQKSVTHTPIELKQMEFTAICAHHGFLFLVNETFNTIIAIDPATGERVGSSHYSSDLILACDRFFRTIDRRQWLALSFDISRGQPVMTEFSLGTVNPSDVVTIFERDPDIGPVCILWKGGKIYFPAREELKTIPVMDSVKVESISSEDISTDGQIVAIKLDNTFSWDRCVLNLYSMQAELKPARPDIQKWIDQPAHWKNSGRNIRKKFMGILVTESGELVLKTTKQSTLRISYQPELKYI 821
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BLAST of mRNA_M-pyrifera_M_contig81439.19046.1 vs. uniprot
Match: A0A518A3E2_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A3E2_9PLAN)

HSP 1 Score: 509 bits (1310), Expect = 1.070e-171
Identity = 238/310 (76.77%), Postives = 276/310 (89.03%), Query Frame = 1 
Query:    1 PGYGQIGVTDSGLLLYWPKSHTGAQLLAFGIPQLNGRNICWKTGIPDQGRISLLTGDLQNSELQLVHIDLEQKSVTHTPIELKQMEFTAICAHHGFLFLVNETFNTIIAIDPATGERVGSSHYSSDLILACDRFFRTIDRSQWLALSFDISRGQPVMTEFNLGTVNPSDVVTIFERDPDIGPVCILWKGGKIYFPAREELKTIPVMDSVKVESISSEDISTDGQIVAIKLDNTFSWDRCVLNLYSMQAELKPARPDIQKWIDQPAHWKNSGRNIRKKFMGILVTESGELVLKTTKQSTLRISYQPDLKYI 930
            PGYGQIGVTDSGLLLYWPKSH GAQLLA+GIP +  R ICWKTGIP QGRISL+ G+LQ SELQ++H+DLE+K V HTPIEL QMEFTAICAHHGFLFL+NE F+TIIA+DP TGERVGSSHY SDLIL+CDRFF+ +DR+QW ALSFD+ +GQPV+TEF+LG +NP+DVVTIFERDPDIGPVCIL  GGKIYFPAREELKTIP MDS+ ++SI+SEDISTDGQI+AI+L+ + SWDRCVLNLYSMQAELK  +PDI+KWIDQPAHWK S +NIRKKF+GILVTESG+L+LK+ KQ+T RI+Y   LK I
Sbjct:  512 PGYGQIGVTDSGLLLYWPKSHAGAQLLAYGIPHMKSREICWKTGIPYQGRISLVAGNLQKSELQIIHVDLEKKHVVHTPIELNQMEFTAICAHHGFLFLINEKFHTIIAVDPVTGERVGSSHYPSDLILSCDRFFQNMDRNQWQALSFDMVKGQPVLTEFSLGKINPADVVTIFERDPDIGPVCILRTGGKIYFPAREELKTIPAMDSINIQSITSEDISTDGQIIAIQLNLSSSWDRCVLNLYSMQAELKSDQPDIRKWIDQPAHWKRSAQNIRKKFIGILVTESGDLILKSNKQATFRITYHEYLKKI 821
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BLAST of mRNA_M-pyrifera_M_contig81439.19046.1 vs. uniprot
Match: A0A517RCS4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RCS4_9PLAN)

HSP 1 Score: 403 bits (1036), Expect = 1.020e-130
Identity = 185/303 (61.06%), Postives = 239/303 (78.88%), Query Frame = 1 
Query:    1 PGYGQIGVTDSGLLLYWPKSHTGAQLLAFGIPQLNGRNICWKTGIPDQGRISLLTGDLQNSELQLVHIDLEQKSVTHTPIELKQMEFTAICAHHGFLFLVNETFNTIIAIDPATGERVGSSHYSSDLILACDRFFRTIDRSQWLALSFDISRGQPVMTEFNLGTVNPSDVVTIFERDPDIGPVCILWKGGKIYFPAREELKTIPVMDSVKVESISSEDISTDGQIVAIKLDNTFSWDRCVLNLYSMQAELKPARPDIQKWIDQPAHWKNSGRNIRKKFMGILVTESGELVLKTTKQSTLRISY 909
            PGYGQ+GVT SGLLL+W  S  GA LLA+ IP L G  I WKTG+P++GR+SL+TG LQNSEL++VHIDLE++ V+HT +EL+QM+ TAICAH GFLF +N++F+TI+ +D  TGER GS HY S+L   CDRFFR  +RS+W ALS D+ +G+P++TEF LG ++P +VVTIFERDPD GPVCIL K G IYFPARE+ K IP+MDS+ V+S++ E IS DGQIV +K+  ++ W+ C+LNLYSMQAELK    DIQ W+DQPAHWK +  N+RKKF+GI++T  G+LVLK+ KQ  LR+ Y
Sbjct:  515 PGYGQLGVTYSGLLLFWSNSRFGASLLAYDIPHLKGDWIQWKTGLPEEGRVSLVTGKLQNSELEIVHIDLEKQDVSHTSLELEQMKCTAICAHQGFLFCINDSFHTIVTVDAITGERAGSCHYPSNLEYVCDRFFRNTNRSKWFALSHDMVKGEPILTEFALGEISPREVVTIFERDPDTGPVCILRKNGTIYFPAREQTKVIPLMDSITVDSLAPEHISADGQIVVLKVHRSYKWEYCLLNLYSMQAELKTDFRDIQSWVDQPAHWKKTVVNVRKKFLGIIITSDGKLVLKSNKQIYLRLDY 817
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81439.19046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7KG59_9PLAN2.160e-21899.03Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A3E2_9PLAN1.070e-17176.77Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A517RCS4_9PLAN1.020e-13061.06Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81439contigM-pyrifera_M_contig81439:2..931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size930
Cds size930
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.6374445-CDS-M-pyrifera_M_contig81439:1..9311622816720.6374445-CDS-M-pyrifera_M_contig81439:1..931Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81439 2..931 +
1692278139.5109272-CDS-M-pyrifera_M_contig81439:1..9311692278139.5109272-CDS-M-pyrifera_M_contig81439:1..931Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81439 2..931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81439.19046.1prot_M-pyrifera_M_contig81439.19046.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81439 2..931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81439.19046.1

>prot_M-pyrifera_M_contig81439.19046.1 ID=prot_M-pyrifera_M_contig81439.19046.1|Name=mRNA_M-pyrifera_M_contig81439.19046.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=310bp
PGYGQIGVTDSGLLLYWPKSHTGAQLLAFGIPQLNGRNICWKTGIPDQGR
ISLLTGDLQNSELQLVHIDLEQKSVTHTPIELKQMEFTAICAHHGFLFLV
NETFNTIIAIDPATGERVGSSHYSSDLILACDRFFRTIDRSQWLALSFDI
SRGQPVMTEFNLGTVNPSDVVTIFERDPDIGPVCILWKGGKIYFPAREEL
KTIPVMDSVKVESISSEDISTDGQIVAIKLDNTFSWDRCVLNLYSMQAEL
KPARPDIQKWIDQPAHWKNSGRNIRKKFMGILVTESGELVLKTTKQSTLR
ISYQPDLKYI
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mRNA from alignment at M-pyrifera_M_contig81439:2..931+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81439.19046.1 ID=mRNA_M-pyrifera_M_contig81439.19046.1|Name=mRNA_M-pyrifera_M_contig81439.19046.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig81439:2..931+ (Macrocystis pyrifera P11B4 male)
CCCGGCTATGGACAAATTGGTGTTACAGATTCCGGTCTTCTGTTGTACTG
GCCCAAATCACATACGGGAGCCCAGTTGCTGGCATTTGGAATCCCCCAGT
TAAATGGCAGGAATATCTGCTGGAAAACAGGGATTCCTGATCAGGGAAGA
ATTTCGCTGCTCACAGGTGATCTTCAGAATTCAGAACTTCAACTGGTACA
CATAGACTTGGAACAGAAAAGCGTCACACATACTCCCATTGAACTGAAGC
AGATGGAATTCACCGCGATCTGCGCCCATCACGGCTTCCTGTTTCTGGTC
AATGAAACGTTCAATACCATTATCGCCATTGATCCTGCTACAGGCGAACG
CGTCGGTTCCTCGCATTATTCTTCAGATTTGATTCTGGCCTGCGATCGTT
TTTTCCGCACAATTGATCGGAGCCAGTGGCTCGCGCTCTCCTTTGATATA
TCTCGGGGACAGCCCGTGATGACCGAATTCAACCTCGGAACAGTCAATCC
CAGCGATGTGGTCACCATTTTTGAACGTGACCCTGATATTGGACCAGTCT
GTATCCTGTGGAAGGGAGGTAAAATCTATTTTCCCGCCCGTGAAGAACTG
AAAACCATTCCGGTCATGGATTCTGTCAAAGTCGAATCAATCTCAAGCGA
GGATATTTCCACCGATGGGCAGATTGTTGCGATCAAACTGGACAATACTT
TCAGCTGGGACAGATGTGTCCTTAATCTATATAGCATGCAGGCCGAATTG
AAACCTGCGCGGCCAGACATTCAGAAATGGATAGATCAGCCGGCGCACTG
GAAAAATTCCGGCCGAAACATCCGCAAAAAGTTTATGGGAATCCTGGTGA
CAGAATCAGGTGAGCTGGTTTTGAAAACGACAAAACAGTCAACATTACGG
ATTTCGTATCAACCGGACTTAAAGTATATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81439:2..931+

>mRNA_M-pyrifera_M_contig81439.19046.1 ID=mRNA_M-pyrifera_M_contig81439.19046.1|Name=mRNA_M-pyrifera_M_contig81439.19046.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1860bp|location=Sequence derived from alignment at M-pyrifera_M_contig81439:2..931+ (Macrocystis pyrifera P11B4 male)
CCCGGCTATGGACAAATTGGTGTTACAGATTCCGGTCTTCTGTTGTACTG
GCCCAAATCACATACGGGAGCCCAGTTGCTGGCATTTGGAATCCCCCAGT
TAAATGGCAGGAATATCTGCTGGAAAACAGGGATTCCTGATCAGGGAAGA
ATTTCGCTGCTCACAGGTGATCTTCAGAATTCAGAACTTCAACTGGTACA
CATAGACTTGGAACAGAAAAGCGTCACACATACTCCCATTGAACTGAAGC
AGATGGAATTCACCGCGATCTGCGCCCATCACGGCTTCCTGTTTCTGGTC
AATGAAACGTTCAATACCATTATCGCCATTGATCCTGCTACAGGCGAACG
CGTCGGTTCCTCGCATTATTCTTCAGATTTGATTCTGGCCTGCGATCGTT
TTTTCCGCACAATTGATCGGAGCCAGTGGCTCGCGCTCTCCTTTGATATA
TCTCGGGGACAGCCCGTGATGACCGAATTCAACCTCGGAACAGTCAATCC
CAGCGATGTGGTCACCATTTTTGAACGTGACCCTGATATTGGACCAGTCT
GTATCCTGTGGAAGGGAGGTAAAATCTATTTTCCCGCCCGTGAAGAACTG
AAAACCATTCCGGTCATGGATTCTGTCAAAGTCGAATCAATCTCAAGCGA
GGATATTTCCACCGATGGGCAGATTGTTGCGATCAAACTGGACAATACTT
TCAGCTGGGACAGATGTGTCCTTAATCTATATAGCATGCAGGCCGAATTG
AAACCTGCGCGGCCAGACATTCAGAAATGGATAGATCAGCCGGCGCACTG
GAAAAATTCCGGCCGAAACATCCGCAAAAAGTTTATGGGAATCCTGGTGA
CAGAATCAGGTGAGCTGGTTTTGAAAACGACAAAACAGTCAACATTACGG
ATTTCGTATCAACCGGACTTAAAGTATATCCCCGGCTATGGACAAATTGG
TGTTACAGATTCCGGTCTTCTGTTGTACTGGCCCAAATCACATACGGGAG
CCCAGTTGCTGGCATTTGGAATCCCCCAGTTAAATGGCAGGAATATCTGC
TGGAAAACAGGGATTCCTGATCAGGGAAGAATTTCGCTGCTCACAGGTGA
TCTTCAGAATTCAGAACTTCAACTGGTACACATAGACTTGGAACAGAAAA
GCGTCACACATACTCCCATTGAACTGAAGCAGATGGAATTCACCGCGATC
TGCGCCCATCACGGCTTCCTGTTTCTGGTCAATGAAACGTTCAATACCAT
TATCGCCATTGATCCTGCTACAGGCGAACGCGTCGGTTCCTCGCATTATT
CTTCAGATTTGATTCTGGCCTGCGATCGTTTTTTCCGCACAATTGATCGG
AGCCAGTGGCTCGCGCTCTCCTTTGATATATCTCGGGGACAGCCCGTGAT
GACCGAATTCAACCTCGGAACAGTCAATCCCAGCGATGTGGTCACCATTT
TTGAACGTGACCCTGATATTGGACCAGTCTGTATCCTGTGGAAGGGAGGT
AAAATCTATTTTCCCGCCCGTGAAGAACTGAAAACCATTCCGGTCATGGA
TTCTGTCAAAGTCGAATCAATCTCAAGCGAGGATATTTCCACCGATGGGC
AGATTGTTGCGATCAAACTGGACAATACTTTCAGCTGGGACAGATGTGTC
CTTAATCTATATAGCATGCAGGCCGAATTGAAACCTGCGCGGCCAGACAT
TCAGAAATGGATAGATCAGCCGGCGCACTGGAAAAATTCCGGCCGAAACA
TCCGCAAAAAGTTTATGGGAATCCTGGTGACAGAATCAGGTGAGCTGGTT
TTGAAAACGACAAAACAGTCAACATTACGGATTTCGTATCAACCGGACTT
AAAGTATATC
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