mRNA_M-pyrifera_M_contig81436.19045.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81436.19045.1
Unique NamemRNA_M-pyrifera_M_contig81436.19045.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig81436.19045.1 vs. uniprot
Match: A0A6I6AJ99_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AJ99_9PLAN)

HSP 1 Score: 110 bits (275), Expect = 7.010e-28
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1 
Query:    1 PFRALSAQFQSQPRQVAYQPYYGSANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYRYPVXXXXXXXXXXXXXXXXNSRPQYQTYRPVAQPVYRSAVPVSTNSIRNDPFFP 402
            PFRALSA FQSQPR+VAYQPYYGSANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYRYPVXXXXXXXXXXXXXXXXNSRPQYQTYRPVAQPVYRSAVPVSTNSIRNDPFFP
Sbjct:   56 PFRALSAPFQSQPRRVAYQPYYGSANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYRYPVXXXXXXXXXXXXXXXXNSRPQYQTYRPVAQPVYRSAVPVSTNSIRNDPFFP 189
[Close]
BLAST of mRNA_M-pyrifera_M_contig81436.19045.1 vs. uniprot
Match: A0A517PQY8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PQY8_9PLAN)

HSP 1 Score: 94.0 bits (232), Expect = 8.960e-22
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = -1 
Query:  232 LRKKRIISNGIGRHRYRTTIDGLSYRTVSLVLGTAIPVGSVIAXXXXXXXXLHRVTIL 405
            LRKKRIISNGIGRHRYRTTIDGLSYRTVSLVLGTAIPVGSVIA XXXXX  LHRVTIL
Sbjct:  100 LRKKRIISNGIGRHRYRTTIDGLSYRTVSLVLGTAIPVGSVIAGXXXXXVTLHRVTIL 157
[Close]
BLAST of mRNA_M-pyrifera_M_contig81436.19045.1 vs. uniprot
Match: A0A518A8J8_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A8J8_9PLAN)

HSP 1 Score: 82.4 bits (202), Expect = 5.460e-17
Identity = 98/136 (72.06%), Postives = 109/136 (80.15%), Query Frame = 1 
Query:    1 PFRALSAQFQSQPRQVAYQPYYGSANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--QYRYPVXXXXXXXXXXXXXXXXNSRPQYQTYRPVAQPVYRSAVPVSTNSIRNDPFFP 402
            PFRA++A F++QP++VAYQPYYG A+XXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXX  QYRYP                 N RPQY+TYRPV+QPVYRS+VPVSTNS+RNDPFFP
Sbjct:   56 PFRAIAAPFRTQPQRVAYQPYYGQASXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYGSXXXXXXXXXXXXXXXXXXXVSQYRYP-----SQSYPSYGNSNWNVRPQYRTYRPVSQPVYRSSVPVSTNSMRNDPFFP 186
[Close]
BLAST of mRNA_M-pyrifera_M_contig81436.19045.1 vs. uniprot
Match: A6CGT8_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A6CGT8_9PLAN)

HSP 1 Score: 62.4 bits (150), Expect = 2.220e-9
Identity = 32/57 (56.14%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:  232 QYRYPVXXXXXXXXXXXXXXXXNSRPQYQTYRPVAQPVYRSAVPVSTNSIRNDPFFP 402
            QYRYP                 N+  QY  YRPVAQPVYR++VP STNSIRNDPFFP
Sbjct:  129 QYRYPTQSYSGYRGTGL-----NNMQQYPAYRPVAQPVYRTSVPTSTNSIRNDPFFP 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig81436.19045.1 vs. uniprot
Match: A0A517RHK9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RHK9_9PLAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.570e-8
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:  307 PQYQTYRPVAQPVYRSAVPVSTNSIRNDPFFP 402
            PQY TYRPV+QPVYR AVP  TNSIRNDPFFP
Sbjct:  168 PQYSTYRPVSQPVYRPAVPSRTNSIRNDPFFP 199
[Close]
BLAST of mRNA_M-pyrifera_M_contig81436.19045.1 vs. uniprot
Match: A0A517VGB7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VGB7_9PLAN)

HSP 1 Score: 59.7 bits (143), Expect = 2.650e-8
Identity = 31/57 (54.39%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:  232 QYRYPVXXXXXXXXXXXXXXXXNSRPQYQTYRPVAQPVYRSAVPVSTNSIRNDPFFP 402
            QYRYP                 N   QY  YRPV QPVYR++VP STNSIRNDPFFP
Sbjct:  138 QYRYPTQNYTGYRGTGF-----NGVQQYPAYRPVTQPVYRTSVPASTNSIRNDPFFP 189
[Close]
BLAST of mRNA_M-pyrifera_M_contig81436.19045.1 vs. uniprot
Match: A0A2E2C1C6_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C1C6_9PLAN)

HSP 1 Score: 59.3 bits (142), Expect = 3.240e-8
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:  310 QYQTYRPVAQPVYRSAVPVSTNSIRNDPFFP 402
            QY  YRPV QPVYR++VPVSTNSIRNDPFFP
Sbjct:  150 QYPAYRPVTQPVYRTSVPVSTNSIRNDPFFP 180
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81436.19045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6I6AJ99_9PLAN7.010e-2898.51Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A517PQY8_9PLAN8.960e-2294.83Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A518A8J8_9PLAN5.460e-1772.06Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A6CGT8_9PLAN2.220e-956.14Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A517RHK9_9PLAN1.570e-884.38Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A0A517VGB7_9PLAN2.650e-854.39Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A2E2C1C6_9PLAN3.240e-883.87Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81436contigM-pyrifera_M_contig81436:1..405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.6081452-CDS-M-pyrifera_M_contig81436:0..4051622816720.6081452-CDS-M-pyrifera_M_contig81436:0..405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81436 1..405 +
1692278139.4992466-CDS-M-pyrifera_M_contig81436:0..4051692278139.4992466-CDS-M-pyrifera_M_contig81436:0..405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81436 1..405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81436.19045.1prot_M-pyrifera_M_contig81436.19045.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81436 1..405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81436.19045.1

>prot_M-pyrifera_M_contig81436.19045.1 ID=prot_M-pyrifera_M_contig81436.19045.1|Name=mRNA_M-pyrifera_M_contig81436.19045.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
PFRALSAQFQSQPRQVAYQPYYGSANYGNTNCANGRCYTGSGYSSSCTTG
NCPTGSCATGNCGTGFNNCPGGNCGISQYRYPVQSYPSYNAPSYNTPNWN
SRPQYQTYRPVAQPVYRSAVPVSTNSIRNDPFFP*
back to top

mRNA from alignment at M-pyrifera_M_contig81436:1..405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81436.19045.1 ID=mRNA_M-pyrifera_M_contig81436.19045.1|Name=mRNA_M-pyrifera_M_contig81436.19045.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig81436:1..405+ (Macrocystis pyrifera P11B4 male)
CCGTTCCGGGCTCTGTCAGCACAATTCCAGTCACAGCCCCGCCAGGTGGC
TTACCAGCCTTACTACGGTTCGGCTAACTACGGTAACACCAACTGCGCCA
ACGGCCGATGCTATACAGGCTCAGGTTACAGCAGTTCCTGTACGACCGGT
AACTGTCCTACTGGAAGCTGTGCGACCGGGAATTGTGGAACTGGTTTTAA
CAACTGCCCCGGTGGTAACTGTGGGATTTCACAGTATCGTTACCCTGTGC
AGAGTTACCCCAGCTATAACGCTCCCAGCTATAACACTCCCAACTGGAAT
AGCCGTCCCCAGTACCAGACTTACCGTCCGGTAGCTCAGCCCGTCTATCG
TAGTGCGGTACCTGTGTCGACCAATTCCATTCGAAATGATCCGTTTTTTC
CTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81436:1..405+

>mRNA_M-pyrifera_M_contig81436.19045.1 ID=mRNA_M-pyrifera_M_contig81436.19045.1|Name=mRNA_M-pyrifera_M_contig81436.19045.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig81436:1..405+ (Macrocystis pyrifera P11B4 male)
CCGTTCCGGGCTCTGTCAGCACAATTCCAGTCACAGCCCCGCCAGGTGGC
TTACCAGCCTTACTACGGTTCGGCTAACTACGGTAACACCAACTGCGCCA
ACGGCCGATGCTATACAGGCTCAGGTTACAGCAGTTCCTGTACGACCGGT
AACTGTCCTACTGGAAGCTGTGCGACCGGGAATTGTGGAACTGGTTTTAA
CAACTGCCCCGGTGGTAACTGTGGGATTTCACAGTATCGTTACCCTGTGC
AGAGTTACCCCAGCTATAACGCTCCCAGCTATAACACTCCCAACTGGAAT
AGCCGTCCCCAGTACCAGACTTACCGTCCGGTAGCTCAGCCCGTCTATCG
TAGTGCGGTACCTGTGTCGACCAATTCCATTCGAAATGATCCGTTTTTTC
CTTAACCGTTCCGGGCTCTGTCAGCACAATTCCAGTCACAGCCCCGCCAG
GTGGCTTACCAGCCTTACTACGGTTCGGCTAACTACGGTAACACCAACTG
CGCCAACGGCCGATGCTATACAGGCTCAGGTTACAGCAGTTCCTGTACGA
CCGGTAACTGTCCTACTGGAAGCTGTGCGACCGGGAATTGTGGAACTGGT
TTTAACAACTGCCCCGGTGGTAACTGTGGGATTTCACAGTATCGTTACCC
TGTGCAGAGTTACCCCAGCTATAACGCTCCCAGCTATAACACTCCCAACT
GGAATAGCCGTCCCCAGTACCAGACTTACCGTCCGGTAGCTCAGCCCGTC
TATCGTAGTGCGGTACCTGTGTCGACCAATTCCATTCGAAATGATCCGTT
TTTTCCTTAA
back to top