mRNA_M-pyrifera_M_contig81434.19044.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81434.19044.1
Unique NamemRNA_M-pyrifera_M_contig81434.19044.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Match: X6P5N8_RETFI (Thyroid hormone receptor interactor n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6P5N8_RETFI)

HSP 1 Score: 96.3 bits (238), Expect = 7.300e-24
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    7 QVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVPCPKGVYQILLTCILELTRAGILSDK 225
            QVVNA+LTQ+D LR   NV+ILTTSNI+ AID+AFVDRADIK Y+G+P    VY+IL TC+ EL R GI+ DK
Sbjct:    8 QVVNALLTQLDLLRKHNNVVILTTSNISEAIDLAFVDRADIKQYIGLPTTPAVYRILRTCLEELERVGIIRDK 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Match: A0A7S4I770_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I770_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 9.320e-24
Identity = 47/70 (67.14%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    7 QVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVPCPKGVYQILLTCILELTRAGIL 216
            +VVNA+LTQIDQL+   N+LILTTSNITGAID+AFVDRADIK ++G P P+ +Y+IL +CILEL+RA ++
Sbjct:  265 RVVNALLTQIDQLKNFSNILILTTSNITGAIDLAFVDRADIKQFIGPPSPEAIYEILSSCILELSRANVI 334
[Close]
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Match: A0A8J1UT54_OWEFU (Ofus.G181284 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UT54_OWEFU)

HSP 1 Score: 99.8 bits (247), Expect = 5.070e-23
Identity = 48/71 (67.61%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    7 QVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVPCPKGVYQILLTCILELTRAGILS 219
            +VVNA+LTQIDQ++   NVLILTTSN+TGAID+AFVDRADIK Y+G P P+ +++IL +CI EL RAGI+S
Sbjct:  272 RVVNALLTQIDQIKRYPNVLILTTSNVTGAIDLAFVDRADIKQYIGPPSPEAIFKILHSCISELMRAGIIS 342
[Close]
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Match: A0A0L8HHX9_OCTBM (AAA domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8HHX9_OCTBM)

HSP 1 Score: 97.8 bits (242), Expect = 2.590e-22
Identity = 46/71 (64.79%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    7 QVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVPCPKGVYQILLTCILELTRAGILS 219
            +VVNA+LT+IDQ++   NVLILTTSNITGAID+AFVDRADIK Y+G+P P+ +++I  +CI EL R GI+S
Sbjct:  272 RVVNALLTKIDQIKNYSNVLILTTSNITGAIDLAFVDRADIKQYIGLPSPRAIFKIYHSCINELMRTGIIS 342
[Close]
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Match: A0A7J7KI50_BUGNE (TRIP13 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KI50_BUGNE)

HSP 1 Score: 97.8 bits (242), Expect = 2.590e-22
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    7 QVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVPCPKGVYQILLTCILELTRAGILSDK 225
            +VVNA+LTQIDQ++   NVLILTTSN+TGAID+AFVDRADIK Y+G+P P  +Y+I  +CI EL R GI+   
Sbjct:  266 RVVNALLTQIDQIKRYPNVLILTTSNVTGAIDLAFVDRADIKQYIGLPSPAAIYKIFTSCINELIRTGIIKTN 338
[Close]
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Match: A0A438EYY5_VITVI (Pachytene checkpoint protein 2-like n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EYY5_VITVI)

HSP 1 Score: 94.0 bits (232), Expect = 2.690e-22
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    7 QVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVPCPKGVYQILLTCILELTRAGILSDK 225
            +VVNA+LTQ+D+L+   NV+ILTTSNIT AID+AFVDRADIK YVG P     Y+IL +C+ EL RAGIL++ 
Sbjct:   37 RVVNALLTQLDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTIHARYEILRSCLQELVRAGILTNS 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Match: A0A6S7JL65_PARCT (Pachytene checkpoint 2 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JL65_PARCT)

HSP 1 Score: 96.3 bits (238), Expect = 3.250e-22
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    7 QVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVPCPKGVYQILLTCILELTRAGILS 219
            +VVNA LTQIDQ++   NV+ILTTSNITGAID+AFVDRADIK Y+G P PK +Y+I  +CI EL R  I+S
Sbjct:  154 RVVNAFLTQIDQIKRYPNVIILTTSNITGAIDLAFVDRADIKQYIGPPSPKAIYKIYHSCIKELVRTSIIS 224
[Close]
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Match: A0A8B6H077_MYTGA (AAA domain-containing protein n=3 Tax=Mytilus TaxID=6548 RepID=A0A8B6H077_MYTGA)

HSP 1 Score: 96.7 bits (239), Expect = 4.040e-22
Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    7 QVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVPCPKGVYQILLTCILELTRAGILS 219
            +VVNA+LTQIDQ++   NV+ILTTSN+TGAID+AFVDRADIK Y+G P P  +Y+I L+CI EL +A I+S
Sbjct:  211 RVVNALLTQIDQIKKHNNVMILTTSNVTGAIDLAFVDRADIKQYIGPPSPGAIYKIYLSCICELMKAKIIS 281
[Close]
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Match: A0A2T7NIM1_POMCA (AAA domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NIM1_POMCA)

HSP 1 Score: 97.1 bits (240), Expect = 4.900e-22
Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    7 QVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVPCPKGVYQILLTCILELTRAGILS 219
            +VVNA+LTQIDQL+   N LILTTSNITGAID+AFVDRADIK Y+G P P+ +Y+I ++C+ EL R GI++
Sbjct:  272 RVVNAVLTQIDQLKKFPNCLILTTSNITGAIDLAFVDRADIKQYIGPPSPRAIYKIFISCLNELMRVGIIT 342
[Close]
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Match: A0A8J5DHC4_9CHEL (Pachytene checkpoint protein 2 n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5DHC4_9CHEL)

HSP 1 Score: 97.1 bits (240), Expect = 5.160e-22
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    7 QVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVPCPKGVYQILLTCILELTRAGILSDK 225
            +VVNA+LTQIDQL+   NVLILTTSN+T +ID AF+DRADIK Y+G+P    +YQI  +C+ EL+RA I+SDK
Sbjct:  277 RVVNALLTQIDQLKRYSNVLILTTSNMTSSIDEAFIDRADIKQYIGLPTAPAIYQIYKSCLKELSRANIISDK 349
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81434.19044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X6P5N8_RETFI7.300e-2465.75Thyroid hormone receptor interactor n=1 Tax=Reticu... [more]
A0A7S4I770_9EUKA9.320e-2467.14Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A8J1UT54_OWEFU5.070e-2367.61Ofus.G181284 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A0L8HHX9_OCTBM2.590e-2264.79AAA domain-containing protein n=2 Tax=Octopus TaxI... [more]
A0A7J7KI50_BUGNE2.590e-2263.01TRIP13 n=1 Tax=Bugula neritina TaxID=10212 RepID=A... [more]
A0A438EYY5_VITVI2.690e-2263.01Pachytene checkpoint protein 2-like n=2 Tax=Vitis ... [more]
A0A6S7JL65_PARCT3.250e-2266.20Pachytene checkpoint 2 homolog n=1 Tax=Paramuricea... [more]
A0A8B6H077_MYTGA4.040e-2264.79AAA domain-containing protein n=3 Tax=Mytilus TaxI... [more]
A0A2T7NIM1_POMCA4.900e-2264.79AAA domain-containing protein n=1 Tax=Pomacea cana... [more]
A0A8J5DHC4_9CHEL5.160e-2263.01Pachytene checkpoint protein 2 n=1 Tax=Nymphon str... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81434contigM-pyrifera_M_contig81434:692..916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score94.7
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog6500.XP_005090335.1
Preferred nameTRIP13
KEGG koko:K22399
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000166,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0001556,GO:0001673,GO:0003006,GO:0003674,GO:0003712,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007140,GO:0007141,GO:0007143,GO:0007144,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0009994,GO:0010467,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016070,GO:0017076,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030554,GO:0031323,GO:0031326,GO:0031577,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035825,GO:0036094,GO:0040020,GO:0042802,GO:0043073,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048515,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0070192,GO:0070193,GO:0071173,GO:0071174,GO:0071695,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:0098687,GO:0098813,GO:0140013,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903046,GO:1903047,GO:1903506,GO:1905818,GO:1905819,GO:2000241,GO:2000242,GO:2000816,GO:2001141,GO:2001251
EggNOG free text desc.Belongs to the AAA ATPase family
EggNOG OGs38HYG@33154,3BD53@33208,3CVJN@33213,COG0464@1,KOG0744@2759
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.5692449-CDS-M-pyrifera_M_contig81434:691..9161622816720.5692449-CDS-M-pyrifera_M_contig81434:691..916Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81434 692..916 +
1692278139.484259-CDS-M-pyrifera_M_contig81434:691..9161692278139.484259-CDS-M-pyrifera_M_contig81434:691..916Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81434 692..916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81434.19044.1prot_M-pyrifera_M_contig81434.19044.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81434 692..916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81434.19044.1

>prot_M-pyrifera_M_contig81434.19044.1 ID=prot_M-pyrifera_M_contig81434.19044.1|Name=mRNA_M-pyrifera_M_contig81434.19044.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MEQVVNAMLTQIDQLRGCGNVLILTTSNITGAIDVAFVDRADIKLYVGVP
CPKGVYQILLTCILELTRAGILSDK
back to top

mRNA from alignment at M-pyrifera_M_contig81434:692..916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81434.19044.1 ID=mRNA_M-pyrifera_M_contig81434.19044.1|Name=mRNA_M-pyrifera_M_contig81434.19044.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig81434:692..916+ (Macrocystis pyrifera P11B4 male)
ATGGAACAGGTGGTCAACGCCATGCTTACGCAGATTGATCAGCTCCGCGG
ATGTGGAAATGTGCTGATCCTCACAACTTCCAACATCACTGGTGCCATTG
ATGTGGCTTTTGTGGACCGAGCCGACATCAAGCTCTATGTTGGCGTGCCT
TGCCCGAAGGGGGTGTATCAGATCCTCCTCACGTGTATCCTTGAGCTTAC
GCGTGCTGGCATTCTCTCTGACAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81434:692..916+

>mRNA_M-pyrifera_M_contig81434.19044.1 ID=mRNA_M-pyrifera_M_contig81434.19044.1|Name=mRNA_M-pyrifera_M_contig81434.19044.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig81434:692..916+ (Macrocystis pyrifera P11B4 male)
ATGGAACAGGTGGTCAACGCCATGCTTACGCAGATTGATCAGCTCCGCGG
ATGTGGAAATGTGCTGATCCTCACAACTTCCAACATCACTGGTGCCATTG
ATGTGGCTTTTGTGGACCGAGCCGACATCAAGCTCTATGTTGGCGTGCCT
TGCCCGAAGGGGGTGTATCAGATCCTCCTCACGTGTATCCTTGAGCTTAC
GCGTGCTGGCATTCTCTCTGACAAGATGGAACAGGTGGTCAACGCCATGC
TTACGCAGATTGATCAGCTCCGCGGATGTGGAAATGTGCTGATCCTCACA
ACTTCCAACATCACTGGTGCCATTGATGTGGCTTTTGTGGACCGAGCCGA
CATCAAGCTCTATGTTGGCGTGCCTTGCCCGAAGGGGGTGTATCAGATCC
TCCTCACGTGTATCCTTGAGCTTACGCGTGCTGGCATTCTCTCTGACAAG
back to top