mRNA_M-pyrifera_M_contig81383.19035.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81383.19035.1
Unique NamemRNA_M-pyrifera_M_contig81383.19035.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81383.19035.1 vs. uniprot
Match: B1H2S2_XENTR (FAD-dependent oxidoreductase domain-containing protein 2 precursor n=5 Tax=Xenopus TaxID=8353 RepID=B1H2S2_XENTR)

HSP 1 Score: 72.0 bits (175), Expect = 3.820e-12
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 1
Query:    1 LHRLNFASGLYQMFGHLVDVFVLGPPGSGGDGYGRSWVHLEEVPAPLAPRLARQAATWVE------LALEYGHDASLPARDAFHPLRASIPSDQPQLSHFMHPII----------RLKTTSSSPASATTLQTHHLVEDFLTEF 381
            L R+N ASGLYQMFG L DV +LG   +        + +LEEVPA + P L       V+      L +EYG + S P +D FH  RA   + +   S+F+HP++           +K           ++ HH+VEDFLT++
Sbjct:  433 LKRMNEASGLYQMFGVLADVILLGEDSN-------DFEYLEEVPAGILPMLEESTGRKVKDTGLFVLMMEYGKNFSGPDKDVFHYNRAIGEAGEAWRSNFLHPVVYYYNKLPSEQEMKLRPEDWPLPRPVRLHHVVEDFLTDW 568          
BLAST of mRNA_M-pyrifera_M_contig81383.19035.1 vs. uniprot
Match: B3S8F0_TRIAD (Uncharacterized protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3S8F0_TRIAD)

HSP 1 Score: 67.8 bits (164), Expect = 4.550e-11
Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 1
Query:    1 LHRLNFASGLYQMFGHLVDVFVLGPPGSGGDGYGRSWVHLEEVPAPLAPRLARQAAT-----WVELALEYGHDASLPARDAFHPLRASIPSDQPQLSHFMHPIIR-----LKTTSSSPASATTLQTHHLVEDFLTEFN 384
            L R+N ASGLYQMFG LVD+ ++G        +  S  +LEEVP  + P L  +        ++ L  EYG + S   +D   P   +  +     S  +HPIIR     +K+     +     + HH++EDFLT+++
Sbjct:   67 LTRINQASGLYQMFGKLVDIIIIG--------HNHSHQYLEEVPVGIIPELKTETGRDIKNGFITLTFEYGKEFSGKGKDTLGPENYNHTAKTAHRSGNIHPIIRYYKNFIKSKKDEASIPPANKEHHVLEDFLTDWS 196          
BLAST of mRNA_M-pyrifera_M_contig81383.19035.1 vs. uniprot
Match: UPI001069BCA8 (FAD-dependent oxidoreductase domain-containing protein 2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069BCA8)

HSP 1 Score: 63.5 bits (153), Expect = 3.500e-9
Identity = 42/134 (31.34%), Postives = 67/134 (50.00%), Query Frame = 1
Query:    7 RLNFASGLYQMFGHLVDVFVLGPPGSGGDGYGRSWVHLEEVPAPLAPRLARQAAT----WVELALEYGHDASLPARDAFHPLRASIPSDQPQLSHFMHPIIR-----LKTTSSSPASATTLQTHHLVEDFLTEF 381
            R+N ASG+YQMFG LVDV +               +++EE P  L  +  R +       + + +EYG   S   RD FH  RA++   +  +S+F+HP++      +K      +     + HH+VEDFLT++
Sbjct:  457 RVNEASGIYQMFGILVDVVIYVSEDQA--------IYIEEFPLKLLDKFERYSGLPSGPTIVVNMEYGKSFSGAGRDTFHEDRATLDPSRAHISNFLHPVLYFYRQPVKAMGKDYSLPKPDRIHHIVEDFLTKW 582          
BLAST of mRNA_M-pyrifera_M_contig81383.19035.1 vs. uniprot
Match: A0A369S2V7_9METZ (FAD-dependent oxidoreductase domain-containing protein 2 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369S2V7_9METZ)

HSP 1 Score: 61.2 bits (147), Expect = 2.220e-8
Identity = 41/133 (30.83%), Postives = 64/133 (48.12%), Query Frame = 1
Query:   16 FASGLYQMFGHLVDVFVLGPPGSGGDGYGRSWVHLEEVPAPLAPRLARQAAT-----WVELALEYGHDASLPARDAFHPLRASIPSDQPQLSHFMHPIIR-----LKTTSSSPASATTLQTHHLVEDFLTEFN 384
            F  GLYQMFG LVD+ ++G        +  S  +LEEVP  + P L  +        ++ L  EYG + S   +D   P   +  +     S  +HPIIR     +K+     +     + HH++EDFLT+++
Sbjct:  412 FIQGLYQMFGKLVDIIIIG--------HNHSHQYLEEVPVGIIPELKTETGRDIKNGFITLTFEYGKEFSGKGKDTLGPENYNHTAKTAHRSGNIHPIIRYYKNFIKSKKDEASIPPANKEHHVLEDFLTDWS 536          
BLAST of mRNA_M-pyrifera_M_contig81383.19035.1 vs. uniprot
Match: A0A6J8EB31_MYTCO (FAD-dependent oxidoreductase domain-containing protein 2 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EB31_MYTCO)

HSP 1 Score: 57.0 bits (136), Expect = 4.860e-7
Identity = 36/103 (34.95%), Postives = 50/103 (48.54%), Query Frame = 1
Query:    7 RLNFASGLYQMFGHLVDVFVLGPPGSGGDGYGRSWVHLEEVPAPLAPRLARQAA------TWVELALEYGHDASLPARDAFHPLRASIPSDQPQLSHFMHPII 297
            R+N ASG+YQMFG LVDV +L            S+ + EE P  L     +         + + L LEYG D   P+ D F   RA+       LS+F+HP++
Sbjct:  175 RINEASGIYQMFGQLVDVILLSS---------ESFEYFEEFPVNLIQEFDKITGESISNKSMIVLGLEYGEDYHGPSEDVFREDRAATEPKYAHLSNFLHPVL 268          
BLAST of mRNA_M-pyrifera_M_contig81383.19035.1 vs. uniprot
Match: A0A369S2T3_9METZ (FAD-dependent oxidoreductase domain-containing protein 2 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369S2T3_9METZ)

HSP 1 Score: 57.0 bits (136), Expect = 7.110e-7
Identity = 43/141 (30.50%), Postives = 65/141 (46.10%), Query Frame = 1
Query:    1 LHRLNFASGLYQMFGHLVDVFVLGPPGSGGDGYGRSWVHLEEVPAPLAPRLARQAAT-----WVELALEYGHDASLPARDAFHPLRASIPSD--------QPQLSHFMHPIIRLKTTSSSPASATTLQTHHLVEDFLTEFN 384
            L R+N ASGLYQMF  L DV ++   G+          +LE++P    P L +          + +A EYG   + P  D   P R +             P++ ++ HP+  L    + P   T  + HH+VEDFLTE++
Sbjct:  909 LKRINQASGLYQMFSILTDVILIDDSGN--------HKYLEDIPIRAIPNLKKLTGVPATRRMLIMAFEYGKGFAGPRTDTLGPDRVNAEWQIAHKCNFIHPKIYYYDHPLTELNPDGTLP---TPKKIHHVVEDFLTEWD 1038          
BLAST of mRNA_M-pyrifera_M_contig81383.19035.1 vs. uniprot
Match: B3S8E8_TRIAD (Uncharacterized protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3S8E8_TRIAD)

HSP 1 Score: 53.9 bits (128), Expect = 7.980e-6
Identity = 44/144 (30.56%), Postives = 63/144 (43.75%), Query Frame = 1
Query:    1 LHRLNFASGLYQMFGHLVDVFVLGPPGSGGDGYGRSWVHLEEVPAPLAPRLARQAAT-----WVELALEYGHDASLPARDAFHPLRASIPSDQPQLSHFMHPII-----------RLKTTSSSPASATTLQTHHLVEDFLTEFN 384
            L R+N ASGLYQMF  L DV ++   G+          +LE++P    P L +          + +A EYG   + P  D   P R +         +F+HP I           +L  T       T  + HH+VEDFLTE++
Sbjct:  422 LKRINQASGLYQMFSILTDVILIDDSGN--------HKYLEDIPIRAIPNLKKLTGVPATRRMLIMAFEYGKGFAGPRTDTLGPDRVNAEWQIAHKCNFIHPKIYYYDHPLTGKFKLVATYYYGTLPTPKKIHHVVEDFLTEWD 557          
BLAST of mRNA_M-pyrifera_M_contig81383.19035.1 vs. uniprot
Match: A0A7J7KFH8_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KFH8_BUGNE)

HSP 1 Score: 53.5 bits (127), Expect = 1.060e-5
Identity = 40/141 (28.37%), Postives = 61/141 (43.26%), Query Frame = 1
Query:    7 RLNFASGLYQMFGHLVDVFVLGPPGSGGDGYGRSWVHLEEVPAPLAPRLARQAATW-----VELALEYGHDASLPARDAFHPLRASIPSDQPQLSHFMHPII----------RLKTTSSSPASATTLQTHHLVEDFLTEFN 384
            R+N AS  YQMF  L D+ ++           +++  L+E P  L   + +    W     + +  EYG D S P +D F   RA     +   S+F+HP             +          T ++ HH+VEDFLTEF+
Sbjct:  312 RINEASATYQMFSVLGDIILINDED-------KTFRMLKEFPVKLLADIHKHTG-WNGTRIIVMLFEYGPDFSGPGKDIFRETRAIDEPSEAHQSNFLHPTFYYYDKIPTEEEMNAVERPEVLPTPVRLHHIVEDFLTEFD 444          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81383.19035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
B1H2S2_XENTR3.820e-1234.97FAD-dependent oxidoreductase domain-containing pro... [more]
B3S8F0_TRIAD4.550e-1132.61Uncharacterized protein n=1 Tax=Trichoplax adhaere... [more]
UPI001069BCA83.500e-931.34FAD-dependent oxidoreductase domain-containing pro... [more]
A0A369S2V7_9METZ2.220e-830.83FAD-dependent oxidoreductase domain-containing pro... [more]
A0A6J8EB31_MYTCO4.860e-734.95FAD-dependent oxidoreductase domain-containing pro... [more]
A0A369S2T3_9METZ7.110e-730.50FAD-dependent oxidoreductase domain-containing pro... [more]
B3S8E8_TRIAD7.980e-630.56Uncharacterized protein n=1 Tax=Trichoplax adhaere... [more]
A0A7J7KFH8_BUGNE1.060e-528.37Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81383contigM-pyrifera_M_contig81383:207..884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.6
Seed ortholog evalue7.7e-11
Seed eggNOG ortholog8364.ENSXETP00000000505
Preferred nameFOXRED2
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0031974,GO:0033554,GO:0034976,GO:0036094,GO:0036503,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051603,GO:0051716,GO:0070013,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.FAD-dependent oxidoreductase
EggNOG OGs39RUC@33154,3BIQ5@33208,3CTEJ@33213,487YF@7711,48ZPY@7742,COG2072@1,KOG1399@2759
COG Functional cat.Q
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.12866-CDS-M-pyrifera_M_contig81383:206..4281622816720.12866-CDS-M-pyrifera_M_contig81383:206..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81383 207..428 -
1692278139.278759-CDS-M-pyrifera_M_contig81383:206..4281692278139.278759-CDS-M-pyrifera_M_contig81383:206..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81383 207..428 -
1622816720.139977-CDS-M-pyrifera_M_contig81383:722..8841622816720.139977-CDS-M-pyrifera_M_contig81383:722..884Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81383 723..884 -
1692278139.2896726-CDS-M-pyrifera_M_contig81383:722..8841692278139.2896726-CDS-M-pyrifera_M_contig81383:722..884Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81383 723..884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81383.19035.1prot_M-pyrifera_M_contig81383.19035.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81383 207..884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81383.19035.1

>prot_M-pyrifera_M_contig81383.19035.1 ID=prot_M-pyrifera_M_contig81383.19035.1|Name=mRNA_M-pyrifera_M_contig81383.19035.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
LHRLNFASGLYQMFGHLVDVFVLGPPGSGGDGYGRSWVHLEEVPAPLAPR
LARQAATWVELALEYGHDASLPARDAFHPLRASIPSDQPQLSHFMHPIIR
LKTTSSSPASATTLQTHHLVEDFLTEFN
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mRNA from alignment at M-pyrifera_M_contig81383:207..884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81383.19035.1 ID=mRNA_M-pyrifera_M_contig81383.19035.1|Name=mRNA_M-pyrifera_M_contig81383.19035.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig81383:207..884- (Macrocystis pyrifera P11B4 male)
TTGCATCGCTTGAATTTTGCTTCTGGTCTCTACCAAATGTTTGGCCATCT TGTTGATGTTTTTGTGTTAGGTCCTCCAGGGAGTGGAGGAGATGGATATG GGAGATCTTGGGTGCATCTAGAAGAAGTTCCAGCTCCGCTTGCACCACGA CTAGCACGTCAAGTGCATGCTGATTTGCATGGAAATCTTCCTGATGAACA AGTCTACGGTAGTTTGGAACGGCCCGATGCAAGTGTTGAGATTGAGGAGA GGGTGGATTTGATGAAGAAGCGGAGAGCAGAGTTGGGACATTACAATGTG GAAATCATGAATGCAGGCAGCAATGGCCCATTTGCTGACATTGCCAATCC ACTCCGAGCATATCACAAAGTCTACTATGATCGTCATCGCGATGTCGTCC CACTCACAGCTGATGAGCAACGTCTTGACCGTGCCATGAATGCTGCTGGG TTAGAGGCAGCAACTTGGGTTGAATTGGCTTTGGAATATGGACACGATGC AAGTCTCCCAGCTCGAGATGCGTTTCATCCCTTGCGTGCGAGCATTCCAT CCGACCAACCACAACTCTCACACTTTATGCACCCAATCATTCGTCTCAAA ACTACGTCCTCTTCCCCTGCTTCTGCAACAACTCTCCAAACTCATCATTT AGTTGAAGACTTCTTGACAGAATTCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81383:207..884-

>mRNA_M-pyrifera_M_contig81383.19035.1 ID=mRNA_M-pyrifera_M_contig81383.19035.1|Name=mRNA_M-pyrifera_M_contig81383.19035.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig81383:207..884- (Macrocystis pyrifera P11B4 male)
TTGCATCGCTTGAATTTTGCTTCTGGTCTCTACCAAATGTTTGGCCATCT
TGTTGATGTTTTTGTGTTAGGTCCTCCAGGGAGTGGAGGAGATGGATATG
GGAGATCTTGGGTGCATCTAGAAGAAGTTCCAGCTCCGCTTGCACCACGA
CTAGCACGTCAATTGCATCGCTTGAATTTTGCTTCTGGTCTCTACCAAAT
GTTTGGCCATCTTGTTGATGTTTTTGTGTTAGGTCCTCCAGGGAGTGGAG
GAGATGGATATGGGAGATCTTGGGTGCATCTAGAAGAAGTTCCAGCTCCG
CTTGCACCACGACTAGCACGTCAAGCAGCAACTTGGGTTGAATTGGCTTT
GGAATATGGACACGATGCAAGTCTCCCAGCTCGAGATGCGTTTCATCCCT
TGCGTGCGAGCATTCCATCCGACCAACCACAACTCTCACACTTTATGCAC
CCAATCATTCGTCTCAAAACTACGTCCTCTTCCCCTGCTTCTGCAACAAC
TCTCCAAACTCATCATTTAGTTGAAGACTTCTTGACAGAATTCAACGCAG
CAACTTGGGTTGAATTGGCTTTGGAATATGGACACGATGCAAGTCTCCCA
GCTCGAGATGCGTTTCATCCCTTGCGTGCGAGCATTCCATCCGACCAACC
ACAACTCTCACACTTTATGCACCCAATCATTCGTCTCAAAACTACGTCCT
CTTCCCCTGCTTCTGCAACAACTCTCCAAACTCATCATTTAGTTGAAGAC
TTCTTGACAGAATTCAAC
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