mRNA_M-pyrifera_M_contig8138.19034.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8138.19034.1
Unique NamemRNA_M-pyrifera_M_contig8138.19034.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Match: D7FXG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 2.490e-35
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKQKGFGMPV 198
            QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMI+SPFQTAHENLTLLFEKNKQKGFGMP 
Sbjct:  148 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIDSPFQTAHENLTLLFEKNKQKGFGMPA 213
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BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Match: A0A6H5L3L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L2_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.930e-33
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKQKGFGMPV 198
            QALAVLPTSGNPHNQLA+LATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNK KGFGMP 
Sbjct:  291 QALAVLPTSGNPHNQLALLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNK-KGFGMPA 355
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BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Match: A0A835Z7T1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.490e-24
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKQK 180
            +ALA +P  GNPHNQ+AVLATYTDAECV+VYRYCRSL+I  PF TA ENL LLFEKNKQK
Sbjct:  193 RALAAMPHGGNPHNQMAVLATYTDAECVAVYRYCRSLLIRHPFMTARENLALLFEKNKQK 252
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BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Match: W7U237_9STRA (Telomerase activating protein est1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U237_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.310e-22
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKQK 180
            +A+  +PTSGNPHNQLAVLATYT+AECV+VYRYCR+++  SPF TA ENL LLFEKN+QK
Sbjct:  173 RAIDTMPTSGNPHNQLAVLATYTEAECVAVYRYCRAVLCASPFPTAKENLALLFEKNRQK 232
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BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Match: A0A484EFB0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFB0_BRELC)

HSP 1 Score: 97.8 bits (242), Expect = 3.150e-22
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKQKGFGMPV 198
            +ALAVLP +GNPHNQLAVLATY ++E V+VYRYCRSLM   PF TA ENL LLFE+++Q+ F  P+
Sbjct:  180 RALAVLPDNGNPHNQLAVLATYVESETVAVYRYCRSLMTSQPFTTAEENLALLFERSRQRSFATPI 245
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BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Match: W2HJE6_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2HJE6_PHYPR)

HSP 1 Score: 94.7 bits (234), Expect = 3.760e-21
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKQKGFGMPV 198
            +ALAVLP +GNPHNQLAVLATY +AE V+VYRYCRSL+   PF TA ENL LLFE+++Q+    P+
Sbjct:  137 RALAVLPENGNPHNQLAVLATYVEAETVAVYRYCRSLLTSQPFTTAEENLALLFERSRQRPLAAPI 202
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BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Match: D0NT29_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NT29_PHYIT)

HSP 1 Score: 94.7 bits (234), Expect = 3.800e-21
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKQKGFGMPV 198
            +ALAVLP +GNPHNQLAVLATY +AE V+VYRYCRSL+   PF TA ENL LLFE+++Q+    P+
Sbjct:  157 RALAVLPENGNPHNQLAVLATYVEAETVAVYRYCRSLLTSQPFTTAEENLALLFERSRQRPLAAPI 222
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BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Match: G4ZGW9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZGW9_PHYSP)

HSP 1 Score: 94.7 bits (234), Expect = 3.810e-21
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKQKGFGMPV 198
            +ALAVLP +GNPHNQLAVLATY +AE V+VYRYCRSL+   PF TA ENL LLFE+++Q+    P+
Sbjct:  157 RALAVLPENGNPHNQLAVLATYVEAETVAVYRYCRSLLTSQPFTTAEENLALLFERSRQRPLAAPI 222
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BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Match: W2P2M1_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2P2M1_PHYPR)

HSP 1 Score: 94.7 bits (234), Expect = 3.810e-21
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKQKGFGMPV 198
            +ALAVLP +GNPHNQLAVLATY +AE V+VYRYCRSL+   PF TA ENL LLFE+++Q+    P+
Sbjct:  175 RALAVLPENGNPHNQLAVLATYVEAETVAVYRYCRSLLTSQPFTTAEENLALLFERSRQRPLAAPI 240
[Close]
BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Match: A0A6A4FXL6_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FXL6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.810e-21
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENLTLLFEKNKQKGFGMPV 198
            +ALAVLP +GNPHNQLAVLATY +AE V+VYRYCRSL+   PF TA ENL LLFE+++Q+    P+
Sbjct:  180 RALAVLPENGNPHNQLAVLATYVEAETVAVYRYCRSLLTSQPFTTAEENLALLFERSRQRPLAAPI 245
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8138.19034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG2_ECTSI2.490e-3596.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3L2_9PHAE4.930e-3395.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7T1_9STRA1.490e-2478.33Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
W7U237_9STRA2.310e-2273.33Telomerase activating protein est1 n=2 Tax=Monodop... [more]
A0A484EFB0_BRELC3.150e-2266.67Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
W2HJE6_PHYPR3.760e-2165.15Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
D0NT29_PHYIT3.800e-2165.15Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
G4ZGW9_PHYSP3.810e-2165.15Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
W2P2M1_PHYPR3.810e-2165.15Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A6A4FXL6_9STRA3.810e-2165.15Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8138contigM-pyrifera_M_contig8138:646..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue8.6e-30
Seed eggNOG ortholog2880.D7FXG2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.telomerase RNA binding
EggNOG OGsKOG2162@1,KOG2162@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.096716-CDS-M-pyrifera_M_contig8138:645..8431622816720.096716-CDS-M-pyrifera_M_contig8138:645..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8138 646..843 -
1692278139.2640064-CDS-M-pyrifera_M_contig8138:645..8431692278139.2640064-CDS-M-pyrifera_M_contig8138:645..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8138 646..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8138.19034.1prot_M-pyrifera_M_contig8138.19034.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8138 646..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8138.19034.1

>prot_M-pyrifera_M_contig8138.19034.1 ID=prot_M-pyrifera_M_contig8138.19034.1|Name=mRNA_M-pyrifera_M_contig8138.19034.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
QALAVLPTSGNPHNQLAVLATYTDAECVSVYRYCRSLMIESPFQTAHENL
TLLFEKNKQKGFGMPV
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mRNA from alignment at M-pyrifera_M_contig8138:646..843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8138.19034.1 ID=mRNA_M-pyrifera_M_contig8138.19034.1|Name=mRNA_M-pyrifera_M_contig8138.19034.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig8138:646..843- (Macrocystis pyrifera P11B4 male)
CAGGCGCTGGCCGTCCTACCCACGAGCGGCAATCCCCACAACCAGCTGGC
TGTGCTGGCCACCTACACCGACGCGGAGTGCGTTTCGGTCTACCGCTACT
GCCGGAGCCTCATGATAGAGAGTCCCTTCCAGACGGCACACGAAAACCTT
ACGCTGCTCTTCGAGAAGAACAAACAGAAGGGTTTCGGGATGCCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8138:646..843-

>mRNA_M-pyrifera_M_contig8138.19034.1 ID=mRNA_M-pyrifera_M_contig8138.19034.1|Name=mRNA_M-pyrifera_M_contig8138.19034.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig8138:646..843- (Macrocystis pyrifera P11B4 male)
CAGGCGCTGGCCGTCCTACCCACGAGCGGCAATCCCCACAACCAGCTGGC
TGTGCTGGCCACCTACACCGACGCGGAGTGCGTTTCGGTCTACCGCTACT
GCCGGAGCCTCATGATAGAGAGTCCCTTCCAGACGGCACACGAAAACCTT
ACGCTGCTCTTCGAGAAGAACAAACAGAAGGGTTTCGGGATGCCCGTCCA
GGCGCTGGCCGTCCTACCCACGAGCGGCAATCCCCACAACCAGCTGGCTG
TGCTGGCCACCTACACCGACGCGGAGTGCGTTTCGGTCTACCGCTACTGC
CGGAGCCTCATGATAGAGAGTCCCTTCCAGACGGCACACGAAAACCTTAC
GCTGCTCTTCGAGAAGAACAAACAGAAGGGTTTCGGGATGCCCGTC
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