mRNA_M-pyrifera_M_contig81370.19031.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81370.19031.1
Unique NamemRNA_M-pyrifera_M_contig81370.19031.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81370.19031.1 vs. uniprot
Match: A0A5A8DPB5_CAFRO (IU_nuc_hydro domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8DPB5_CAFRO)

HSP 1 Score: 80.1 bits (196), Expect = 8.280e-15
Identity = 44/134 (32.84%), Postives = 77/134 (57.46%), Query Frame = 1 
Query:   22 GAFAGQFGDAYIENTDLEGVMNIFPSVRLFGEVLERVAGEVDATA-ELDPEVVREIARVVTQAGTSMHSFSPPAVKIARLHEQLSSLPVDGMALIPLGW----NGHAIAGVFHRTGSDEFAVTVVNTGQGLQHH 408
            GA+ G+FGD ++E+T+LEG  ++ PS+++  +++  +A   +A    +DP  +R+ A  + + GT   S      ++  LH +L +L   G  ++P GW     GHAI   +HR    +F   V+N+G+GL+HH
Sbjct:  533 GAYVGEFGDPFVEDTELEGNRSV-PSLKVMVKLVTALAAMAEAHGWRMDPARLRDAAACMDE-GTVAGSGDTVRDQVIDLHSRLVNLKAGGCLMLPSGWLGTGGGHAIMSQWHRREDGDFDFVVINSGEGLEHH 664
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BLAST of mRNA_M-pyrifera_M_contig81370.19031.1 vs. uniprot
Match: A0A0L0D4G4_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D4G4_THETB)

HSP 1 Score: 64.3 bits (155), Expect = 2.710e-9
Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 1 
Query:   16 RTGAFAGQFGDAYIENTDLEGVMNIFPSVRLFGEVLERVAGEVDATAE-LDPEVVREIARVVT-----QAGTSMHSFSPPAVKIARLH----------EQLSSLPVDGMALIPLGW----NGHAIAGVFHRTGSDEFAVTVVNTGQGLQHH 408
            R GAFAG+FGD YI++T+LEG +   PS+R   EV+        +  E L P +    AR+        +   +       V+   L            ++ ++PV G+ ++  GW    +GHA+  V  R   D +A    NTG+G+Q+H
Sbjct:    6 RNGAFAGEFGDPYIKDTNLEGGLTA-PSIRKLNEVVSSALTSHPSLLETLVPGLAAPAARIQALMEELASAAEIDELKAEMVESKSLEGMDAFLELFMAKIRAIPVGGILVMGGGWMGKASGHALLYVLEREADDAYAFVACNTGEGIQYH 155
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BLAST of mRNA_M-pyrifera_M_contig81370.19031.1 vs. uniprot
Match: A0A5A8CT96_CAFRO (Uncharacterized protein n=9 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CT96_CAFRO)

HSP 1 Score: 52.0 bits (123), Expect = 5.340e-5
Identity = 28/61 (45.90%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:  238 AVKIARLHEQLSSLPVDGMALIPLGW----NGHAIAGVFHRTGSDEFAVTVVNTGQGLQHH 408
            A  +A + E++ S  V G+   P GW     GHAI  +  RT  ++FAVTV NTGQGL HH
Sbjct:  122 AALLADICERVRSTKVGGIFGFPSGWADKKGGHAIFLLVERTSEEDFAVTVCNTGQGLNHH 182
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81370.19031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8DPB5_CAFRO8.280e-1532.84IU_nuc_hydro domain-containing protein n=4 Tax=Sar... [more]
A0A0L0D4G4_THETB2.710e-929.80Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A5A8CT96_CAFRO5.340e-545.90Uncharacterized protein n=9 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81370contigM-pyrifera_M_contig81370:32..439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue4.5e-09
Seed eggNOG ortholog227086.JGI_V11_85176
KEGG koko:K12169
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG5184@1,KOG1426@2759,KOG2242@1,KOG2242@2759,KOG2243@1,KOG2243@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.9793444-CDS-M-pyrifera_M_contig81370:31..4391622816719.9793444-CDS-M-pyrifera_M_contig81370:31..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81370 32..439 +
1692278139.2074387-CDS-M-pyrifera_M_contig81370:31..4391692278139.2074387-CDS-M-pyrifera_M_contig81370:31..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81370 32..439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81370.19031.1prot_M-pyrifera_M_contig81370.19031.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81370 32..439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81370.19031.1

>prot_M-pyrifera_M_contig81370.19031.1 ID=prot_M-pyrifera_M_contig81370.19031.1|Name=mRNA_M-pyrifera_M_contig81370.19031.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
KVPLVRTGAFAGQFGDAYIENTDLEGVMNIFPSVRLFGEVLERVAGEVDA
TAELDPEVVREIARVVTQAGTSMHSFSPPAVKIARLHEQLSSLPVDGMAL
IPLGWNGHAIAGVFHRTGSDEFAVTVVNTGQGLQHH
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mRNA from alignment at M-pyrifera_M_contig81370:32..439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81370.19031.1 ID=mRNA_M-pyrifera_M_contig81370.19031.1|Name=mRNA_M-pyrifera_M_contig81370.19031.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig81370:32..439+ (Macrocystis pyrifera P11B4 male)
AAGGTGCCGTTGGTTCGGACTGGGGCATTTGCAGGGCAATTTGGGGACGC
GTACATTGAGAACACGGATCTGGAAGGAGTGATGAACATTTTTCCTTCTG
TACGACTCTTTGGTGAAGTCTTAGAACGAGTTGCGGGTGAAGTTGATGCT
ACAGCAGAATTGGATCCGGAGGTAGTTCGGGAAATTGCACGCGTGGTGAC
GCAAGCTGGGACTTCGATGCACTCGTTTTCGCCGCCGGCGGTGAAAATCG
CTCGTTTGCATGAGCAACTTTCCTCTCTTCCAGTAGATGGTATGGCTTTG
ATTCCATTGGGATGGAATGGTCATGCAATCGCTGGCGTCTTTCACAGAAC
TGGGTCAGATGAATTTGCGGTGACTGTGGTGAACACAGGACAAGGGTTGC
AACATCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81370:32..439+

>mRNA_M-pyrifera_M_contig81370.19031.1 ID=mRNA_M-pyrifera_M_contig81370.19031.1|Name=mRNA_M-pyrifera_M_contig81370.19031.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig81370:32..439+ (Macrocystis pyrifera P11B4 male)
AAGGTGCCGTTGGTTCGGACTGGGGCATTTGCAGGGCAATTTGGGGACGC
GTACATTGAGAACACGGATCTGGAAGGAGTGATGAACATTTTTCCTTCTG
TACGACTCTTTGGTGAAGTCTTAGAACGAGTTGCGGGTGAAGTTGATGCT
ACAGCAGAATTGGATCCGGAGGTAGTTCGGGAAATTGCACGCGTGGTGAC
GCAAGCTGGGACTTCGATGCACTCGTTTTCGCCGCCGGCGGTGAAAATCG
CTCGTTTGCATGAGCAACTTTCCTCTCTTCCAGTAGATGGTATGGCTTTG
ATTCCATTGGGATGGAATGGTCATGCAATCGCTGGCGTCTTTCACAGAAC
TGGGTCAGATGAATTTGCGGTGACTGTGGTGAACACAGGACAAGGGTTGC
AACATCATAAGGTGCCGTTGGTTCGGACTGGGGCATTTGCAGGGCAATTT
GGGGACGCGTACATTGAGAACACGGATCTGGAAGGAGTGATGAACATTTT
TCCTTCTGTACGACTCTTTGGTGAAGTCTTAGAACGAGTTGCGGGTGAAG
TTGATGCTACAGCAGAATTGGATCCGGAGGTAGTTCGGGAAATTGCACGC
GTGGTGACGCAAGCTGGGACTTCGATGCACTCGTTTTCGCCGCCGGCGGT
GAAAATCGCTCGTTTGCATGAGCAACTTTCCTCTCTTCCAGTAGATGGTA
TGGCTTTGATTCCATTGGGATGGAATGGTCATGCAATCGCTGGCGTCTTT
CACAGAACTGGGTCAGATGAATTTGCGGTGACTGTGGTGAACACAGGACA
AGGGTTGCAACATCAT
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