mRNA_M-pyrifera_M_contig81305.19016.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81305.19016.1
Unique NamemRNA_M-pyrifera_M_contig81305.19016.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Match: A0A7V0NN94_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V0NN94_9ACTN)

HSP 1 Score: 151 bits (382), Expect = 1.680e-40
Identity = 68/128 (53.12%), Postives = 87/128 (67.97%), Query Frame = 1
Query:   16 RDPAGRLLAYDTGTAVTHAATDGHNDLYGLINPDGTLTDTATYDPYGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYAGEITTPFTLNRYTYAAGNPIRYWDPTGRCSEYV 399
            R P GR+LA   G +   A  D H DL  L    G ++DTA +DP+G+P+ATTGT+   LG+Q+DYTDPT+DHVWMGARWY    A FLSRD   GE++TP +LNRYTY   NP+ +WDP GR  + +
Sbjct:  392 RSPGGRVLAQSDGVSDLLAGVDRHGDLTFLFTAAGVVSDTALFDPFGDPLATTGTSGTSLGFQSDYTDPTSDHVWMGARWYDGGWAAFLSRDVVFGELSTPISLNRYTYGFANPLSFWDPDGRIPQSI 519          
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Match: A0A3B0SFW5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0SFW5_9ZZZZ)

HSP 1 Score: 140 bits (352), Expect = 1.590e-37
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   10 FHRDPAGRLLAYDTGTAVTHAATDGHNDLYGLINPDGTLTDTATYDPYGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYAGEITTPFTLNRYTYAAGNPIRYWDPTGR 384
            + R P GRL++   G     A  D H DL  L    G ++DTA +DP+G+ +A TG+T+P+LG+Q D+TDP +  VW+GARWY    A FLSRDT  GE  +P +LNRYTYA+ NP+ YWDP GR
Sbjct:   59 YGRSPGGRLVSQSDGVTSLLAGLDRHGDLSFLYTAAGVVSDTAVFDPFGDAVAETGSTDPMLGFQADFTDPVSGQVWLGARWYDGGWAAFLSRDTVFGEQGSPVSLNRYTYASNNPLSYWDPDGR 183          
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Match: A0A3B0T029_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0T029_9ZZZZ)

HSP 1 Score: 139 bits (351), Expect = 2.020e-37
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   10 FHRDPAGRLLAYDTGTAVTHAATDGHNDLYGLINPDGTLTDTATYDPYGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYAGEITTPFTLNRYTYAAGNPIRYWDPTGR 384
            + R P GRL++   G     A  D H DL  L    G ++DTA +DP+G+ +A TG+T+P+LG+Q D+TDP +  VW+GARWY    A FLSRDT  GE  +P +LNRYTYA+ NP+ YWDP GR
Sbjct:   97 YGRSPGGRLVSQTDGVTSLLAGLDRHGDLSFLYTAAGVVSDTAVFDPFGDAVAETGSTDPMLGFQADFTDPVSGQVWLGARWYDGGWAAFLSRDTVFGEQGSPVSLNRYTYASNNPLSYWDPDGR 221          
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Match: A0A0F9CIC1_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9CIC1_9ZZZZ)

HSP 1 Score: 139 bits (350), Expect = 6.310e-36
Identity = 67/146 (45.89%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    1 NDAFHRDPAGRLLAYDTGTAVTHAATDGHNDLYGLINPDGTLT--DTATYDPYGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYAGEITTPFTLNRYTYAAGNPIRYWDPTGRCSEYVQETGECIFYGN 432
            ++ + R P GR++++D GT  +    D H D+ G +   GT+T  D+  +DP+G+P ATTG++   +G+Q D+TDP +  VWMGARWY P+SA F SRDT  GE+ TP +LNRYTY   NP+ YWDP GR    V  T +   YG+
Sbjct:  303 SNIYGRSPGGRVVSHDNGTVTSLVGLDRHGDV-GYLATTGTVTVTDSRVFDPFGKPAATTGSSTITVGFQGDWTDPASGDVWMGARWYDPTSAQFRSRDTLRGELATPISLNRYTYGWANPLTYWDPDGRM---VTPTPQLEKYGS 444          
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Match: UPI001B0042B9 (Ig-like domain repeat protein n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=UPI001B0042B9)

HSP 1 Score: 123 bits (309), Expect = 6.780e-30
Identity = 61/123 (49.59%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   16 RDPAGRLLAYDTGTAVTHAA-TDGHNDLYGLINPDGTLTDTATYDPYGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYAGEITTPFTLNRYTYAAGNPIRYWDPTG 381
            RDP+G  +A  TGT       ++ H DL  L + +GT+  +  Y+PYGE   TTGT +P LG+Q DYTD TT  +WMGARWY P   TF +RDT  G++ TP TLNRYTYA  NP+  +D  G
Sbjct: 4360 RDPSGAPMAQKTGTGTPSLIRSNRHGDLTALFSGNGTVNGSRVYEPYGEVAGTTGTASP-LGFQGDYTDATTHDLWMGARWYLPDVGTFTARDTVFGQLRTPITLNRYTYAGNNPLSMFDADG 4481          
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Match: A0A7H0IS40_9ACTN (DNRLRE domain-containing protein n=2 Tax=Streptomyces roseirectus TaxID=2768066 RepID=A0A7H0IS40_9ACTN)

HSP 1 Score: 120 bits (302), Expect = 5.900e-29
Identity = 63/125 (50.40%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   10 FHRDPAGRLLAYDTGTAVTHAATDGHNDLYGLINPDGT-LTDTATYDPYGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYAGEITTPFTLNRYTYAAGNPIRYWDPTG 381
            ++R P G LL+Y TGT    A TD H DL   + PD T  T + TYDP+G    TTGTT P LGYQ+ +TDPTT  + M ARWYQP + +F SRDT+  E       NRY Y  GNP+   DPTG
Sbjct: 2991 YNRTPDGALLSYSTGTTKQWALTDQHTDLVAGLTPDATQTTSSTTYDPFGTKTTTTGTT-PALGYQSGWTDPTTGDINMAARWYQPGTGSFGSRDTWQLEPNPSSRANRYLYGGGNPLLRTDPTG 3114          
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Match: A0A2V1NSP4_9ACTN (Laminin G n=1 Tax=Streptomyces sp. V2 TaxID=1424099 RepID=A0A2V1NSP4_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 8.040e-29
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 1
Query:   10 FHRDPAGRLLAYDTGTAVTHAATDGHNDLYGLINPDGT-LTDTATYDPYGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYAGEITTPFTLNRYTYAAGNPIRYWDPTG 381
            ++R P G LL+Y  GT    A TD H DL   + P+ T  T + TYDP+G   ATTGTT P +GYQ+ +TDPT+  + M ARWYQP + +F SRDT+  E T     NRY YA G+P+ Y DPTG
Sbjct: 2990 YNRTPDGALLSYTDGTTKQRALTDQHTDLIAGLTPNATQTTSSTTYDPFGTKTATTGTT-PAVGYQSGWTDPTSGDINMAARWYQPGTGSFGSRDTWQLEPTPSARSNRYLYANGSPLNYTDPTG 3113          
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Match: UPI001FD978F3 (DNRLRE domain-containing protein n=1 Tax=Kibdelosporangium banguiense TaxID=1365924 RepID=UPI001FD978F3)

HSP 1 Score: 119 bits (299), Expect = 1.490e-28
Identity = 67/140 (47.86%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   10 FHRDPAGRLLAYDTGTAVTHAATDGHNDLYGLINPDGTLT--DTATYDPYGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYAGEITTPFTLNRYTYAAGNPIRYWDPTGRCSEY-VQETGECI 420
            + R P G +LA   GT      TD H DL G + P G+L   D+AT+DP+G+P+ATTG     LGYQ+DYTDP+T +V MGARWY PS+  F +RD  +   T     NRYTYAAG+P    DP G C+   V+ET + I
Sbjct: 2568 YSRGPGGDVLALSQGTDKRLTLTDQHGDLIGGLAPTGSLAVADSATFDPFGKPLATTGAKRS-LGYQSDYTDPSTGNVDMGARWYTPSTGGFNARDKISLPRTPSGLANRYTYAAGSPTNNIDPDGHCAATAVKETKKAI 2706          
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Match: UPI000DD5B6C7 (DNRLRE domain-containing protein n=1 Tax=Streptomyces sp. ST1015 TaxID=1848900 RepID=UPI000DD5B6C7)

HSP 1 Score: 119 bits (298), Expect = 2.040e-28
Identity = 62/127 (48.82%), Postives = 79/127 (62.20%), Query Frame = 1
Query:   10 FHRDPAGRLLAYDTGTAVTHAATDGHNDLYGLINPDGTLTDTAT-YDPYGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYAGEITTPFTLNRYTYAAGNPIRYWDPTGRC 387
            ++R P G LL+Y  GT    A TD H DL   + PD T T ++T YDP+G   ATTGTT P +GYQ+ +TDPT+  V M ARWYQP + +F SRDT+  + T     NRY+Y AG  +   DPTG C
Sbjct: 2990 YNRTPDGALLSYTDGTTKQRALTDQHTDLIAGLTPDATQTTSSTAYDPFGTKTATTGTT-PAVGYQSGWTDPTSGDVNMAARWYQPGTGSFGSRDTWQLDPTPSGNANRYSYGAGGALNGTDPTGHC 3115          
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Match: UPI001EE4C21F (polymorphic toxin-type HINT domain-containing protein n=3 Tax=unclassified Frankia TaxID=2632575 RepID=UPI001EE4C21F)

HSP 1 Score: 115 bits (289), Expect = 2.900e-27
Identity = 62/136 (45.59%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 NDAFHRDPAGRLLAYDTGTAVTHAATDGHNDLYGLINPDGTLTDTATYDPYGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYAGEITTPFTLNRYTYAAGNPIRYWDPTGRCSEYVQET 408
            + +F RDP G L+A  +        TD H DL       G LTD+ +Y P+GEP+A  G  N  +GYQ  +TDP TD V   ARWY P + TF+SRDT    IT     NRYTYAAGNP+ Y DPTG  ++    T
Sbjct:   10 SSSFSRDPDGDLVAIGSPAGNWATLTDTHGDLVAAFTTAGVLTDSRSYTPFGEPVAA-GNPNLHVGYQGSWTDPATDKVNAQARWYTPGTGTFISRDTANLPITGTAASNRYTYAAGNPLTYNDPTGFANKSTANT 144          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81305.19016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V0NN94_9ACTN1.680e-4053.13Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A3B0SFW5_9ZZZZ1.590e-3750.40Uncharacterized protein (Fragment) n=1 Tax=hydroth... [more]
A0A3B0T029_9ZZZZ2.020e-3750.40Uncharacterized protein (Fragment) n=1 Tax=hydroth... [more]
A0A0F9CIC1_9ZZZZ6.310e-3645.89Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
UPI001B0042B96.780e-3049.59Ig-like domain repeat protein n=1 Tax=Nocardioidac... [more]
A0A7H0IS40_9ACTN5.900e-2950.40DNRLRE domain-containing protein n=2 Tax=Streptomy... [more]
A0A2V1NSP4_9ACTN8.040e-2949.60Laminin G n=1 Tax=Streptomyces sp. V2 TaxID=142409... [more]
UPI001FD978F31.490e-2847.86DNRLRE domain-containing protein n=1 Tax=Kibdelosp... [more]
UPI000DD5B6C72.040e-2848.82DNRLRE domain-containing protein n=1 Tax=Streptomy... [more]
UPI001EE4C21F2.900e-2745.59polymorphic toxin-type HINT domain-containing prot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81305contigM-pyrifera_M_contig81305:3..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score112.5
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog1303692.SFUL_3952
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG3209 Rhs family protein
EggNOG OGs2GMBB@201174,COG3209@1,COG3209@2
COG Functional cat.M
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.3236704-CDS-M-pyrifera_M_contig81305:2..4341622816719.3236704-CDS-M-pyrifera_M_contig81305:2..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81305 3..434 +
1692278138.9237204-CDS-M-pyrifera_M_contig81305:2..4341692278138.9237204-CDS-M-pyrifera_M_contig81305:2..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81305 3..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81305.19016.1prot_M-pyrifera_M_contig81305.19016.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81305 3..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81305.19016.1

>prot_M-pyrifera_M_contig81305.19016.1 ID=prot_M-pyrifera_M_contig81305.19016.1|Name=mRNA_M-pyrifera_M_contig81305.19016.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
NDAFHRDPAGRLLAYDTGTAVTHAATDGHNDLYGLINPDGTLTDTATYDP
YGEPIATTGTTNPVLGYQTDYTDPTTDHVWMGARWYQPSSATFLSRDTYA
GEITTPFTLNRYTYAAGNPIRYWDPTGRCSEYVQETGECIFYGN
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mRNA from alignment at M-pyrifera_M_contig81305:3..434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81305.19016.1 ID=mRNA_M-pyrifera_M_contig81305.19016.1|Name=mRNA_M-pyrifera_M_contig81305.19016.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig81305:3..434+ (Macrocystis pyrifera P11B4 male)
AACGACGCCTTCCACCGCGACCCCGCCGGACGTCTCCTGGCCTACGACAC CGGCACCGCAGTCACCCACGCCGCCACCGACGGGCACAACGACCTGTACG GGCTCATCAACCCCGACGGCACCCTCACCGACACCGCCACCTACGACCCC TACGGGGAGCCCATCGCCACCACCGGCACCACCAACCCCGTCCTCGGCTA CCAAACCGACTACACCGACCCCACCACCGACCACGTCTGGATGGGCGCCC GCTGGTACCAACCATCGTCAGCCACATTCCTGTCACGGGACACCTACGCC GGTGAAATAACCACACCCTTCACCCTCAACCGCTACACCTACGCCGCAGG CAACCCGATTCGCTACTGGGATCCAACAGGGCGCTGCTCCGAATACGTGC AAGAGACCGGTGAGTGCATCTTCTATGGCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81305:3..434+

>mRNA_M-pyrifera_M_contig81305.19016.1 ID=mRNA_M-pyrifera_M_contig81305.19016.1|Name=mRNA_M-pyrifera_M_contig81305.19016.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig81305:3..434+ (Macrocystis pyrifera P11B4 male)
AACGACGCCTTCCACCGCGACCCCGCCGGACGTCTCCTGGCCTACGACAC
CGGCACCGCAGTCACCCACGCCGCCACCGACGGGCACAACGACCTGTACG
GGCTCATCAACCCCGACGGCACCCTCACCGACACCGCCACCTACGACCCC
TACGGGGAGCCCATCGCCACCACCGGCACCACCAACCCCGTCCTCGGCTA
CCAAACCGACTACACCGACCCCACCACCGACCACGTCTGGATGGGCGCCC
GCTGGTACCAACCATCGTCAGCCACATTCCTGTCACGGGACACCTACGCC
GGTGAAATAACCACACCCTTCACCCTCAACCGCTACACCTACGCCGCAGG
CAACCCGATTCGCTACTGGGATCCAACAGGGCGCTGCTCCGAATACGTGC
AAGAGACCGGTGAGTGCATCTTCTATGGCAACAACGACGCCTTCCACCGC
GACCCCGCCGGACGTCTCCTGGCCTACGACACCGGCACCGCAGTCACCCA
CGCCGCCACCGACGGGCACAACGACCTGTACGGGCTCATCAACCCCGACG
GCACCCTCACCGACACCGCCACCTACGACCCCTACGGGGAGCCCATCGCC
ACCACCGGCACCACCAACCCCGTCCTCGGCTACCAAACCGACTACACCGA
CCCCACCACCGACCACGTCTGGATGGGCGCCCGCTGGTACCAACCATCGT
CAGCCACATTCCTGTCACGGGACACCTACGCCGGTGAAATAACCACACCC
TTCACCCTCAACCGCTACACCTACGCCGCAGGCAACCCGATTCGCTACTG
GGATCCAACAGGGCGCTGCTCCGAATACGTGCAAGAGACCGGTGAGTGCA
TCTTCTATGGCAAC
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