mRNA_M-pyrifera_M_contig81304.19015.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81304.19015.1
Unique NamemRNA_M-pyrifera_M_contig81304.19015.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Match: A0A7S4MP24_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MP24_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 2.210e-23
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:   13 STTRRVYVAADEVDWDYAPNGDKYEVDQEIDYRVDAPTFLEPGPDRIGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEV 294
            ++TRR Y+AADEV+W+YAP+G     +  ++   D+  F E GPDRIG  Y KA+YREY+D +FS L  R    EHLG+LGP +WAEVGD IE+
Sbjct:   22 ASTRRHYIAADEVEWNYAPSGFNNVEEVLLEEGRDSHVFFETGPDRIGGTYIKALYREYTDESFSELVPRD---EHLGLLGPIIWAEVGDTIEI 112
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BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Match: A0A1Q7LB78_9BACT (Copper oxidase n=2 Tax=Bacteria TaxID=2 RepID=A0A1Q7LB78_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 3.260e-22
Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    4 AEASTTRRVYVAADEVDWDYAPNGDKYEVDQEIDYRVD--APTFLEPGPDRIGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEV 294
            A A   R  YVAADEV+WDYAP G    +++ +  + D  A TF E GP RIG+VY+KA+YREY+D TF+ L  R+ + +HLG+LGP + AEVGD I+V
Sbjct:   34 ASALKVRTYYVAADEVEWDYAPGG----INKMMGTKFDGYAKTFAERGPHRIGTVYRKAVYREYTDETFTKLKPRALEWQHLGMLGPVLRAEVGDTIKV 128
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BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Match: UPI002018F749 (ceruloplasmin isoform X2 n=3 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI002018F749)

HSP 1 Score: 99.0 bits (245), Expect = 6.140e-22
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   22 RRVYVAADEVDWDYAPNG-DKYEVDQEIDYRVDAPTFLEPGPDRIGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEV 294
            R  Y+AA+E+ W YAP+G D +  +   D   DA  F E GP RIG  YKK +YREY+DA+F     R  D EHLG+LGP +W+EVGD+I+V
Sbjct:  371 RHYYIAAEEIIWSYAPSGVDAFTKENLTDPESDAGVFFEQGPTRIGGSYKKLVYREYTDASFLTRKVRGPDEEHLGVLGPLIWSEVGDVIKV 462
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BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Match: UPI00167F6394 (ceruloplasmin n=1 Tax=Onychomys torridus TaxID=38674 RepID=UPI00167F6394)

HSP 1 Score: 98.2 bits (243), Expect = 1.140e-21
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   22 RRVYVAADEVDWDYAPNG-DKYEVDQEIDYRVDAPTFLEPGPDRIGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEV 294
            R  Y+AA+E+ WDYAP+G D +  D       D+  F E G  RIG  YKK +YREY+D +F+N   R  D EHLGILGP +WAEVGDII+V
Sbjct:  373 RHYYIAAEEIIWDYAPSGTDVFTGDNLTALESDSRVFFEQGAMRIGGSYKKVVYREYTDDSFTNQKQRGPDEEHLGILGPVIWAEVGDIIKV 464
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BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Match: UPI0003F0698C (ceruloplasmin-like n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0698C)

HSP 1 Score: 96.7 bits (239), Expect = 3.960e-21
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:   22 RRVYVAADEVDWDYAPNG-DKYEVDQEIDYRVDAPTFLEPGPDRIGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEVWTLGTGT 315
            R  Y+AA+E+ W+YAP+G D +  +       ++  F E GP RIGS YKK +YREY+D +F+    R  D EHLGILGP +WAEVGDII V     GT
Sbjct:  371 RHYYIAAEEIIWNYAPSGKDAFTNEDLTAIGSESEIFFEQGPTRIGSSYKKLVYREYTDNSFAKRKERGPDEEHLGILGPVIWAEVGDIIRVTFKNKGT 469
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BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Match: A0A834AUX5_9CHIR (Ceruloplasmin n=2 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A834AUX5_9CHIR)

HSP 1 Score: 96.7 bits (239), Expect = 3.970e-21
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   22 RRVYVAADEVDWDYAPNG-DKYEVDQEIDYRVDAPTFLEPGPDRIGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEV 294
            RR Y+AA+E+ W+YAP+G D +  +        +  F E GP RIG  YKK +YREY+DA+F+N   R  + EHLGILGP +WAEVGD I+V
Sbjct:  372 RRYYIAAEEIIWNYAPSGIDTFTQENLTSPGSASEVFFEQGPTRIGGSYKKLVYREYTDASFTNQKERGPEEEHLGILGPVIWAEVGDTIQV 463
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BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Match: A0A1U7R5I7_MESAU (ceruloplasmin n=4 Tax=Mesocricetus auratus TaxID=10036 RepID=A0A1U7R5I7_MESAU)

HSP 1 Score: 96.7 bits (239), Expect = 3.970e-21
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:    7 EASTTRRVYVAADEVDWDYAPNG-DKYEVDQEIDYRVDAPTFLEPGPDRIGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEV 294
            +A   R  Y+AA+E+ W+YAP+G D +  D       D+  F E G  RIG  YKK +YREY+DA+F+N   R  D +HLGILGP +WAEVGDII+V
Sbjct:  366 QAKHVRHYYIAAEEIIWNYAPSGTDIFTGDNLTAPESDSRVFFEQGAMRIGGSYKKLVYREYTDASFTNRKQRGPDEKHLGILGPVIWAEVGDIIKV 462
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BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Match: A0A6J2L0V5_9CHIR (ceruloplasmin isoform X1 n=12 Tax=Phyllostomidae TaxID=9415 RepID=A0A6J2L0V5_9CHIR)

HSP 1 Score: 96.7 bits (239), Expect = 3.970e-21
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   22 RRVYVAADEVDWDYAPNG-DKYEVDQEIDYRVDAPTFLEPGPDRIGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEV 294
            RR Y+AA+E+ W+YAP+G D +  +        +  F E GP RIG  YKK +YREY+DA+F+N   R  + EHLGILGP +WAEVGD I+V
Sbjct:  372 RRYYIAAEEIIWNYAPSGIDTFTQENLTSPGSASEVFFEQGPTRIGGSYKKLVYREYTDASFTNQKERGPEEEHLGILGPVIWAEVGDTIQV 463
[Close]
BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Match: A0A7S4HLT9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HLT9_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 4.700e-21
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 AAEASTTRRVYVAADEVDWDYAPNGDKYEVDQEIDYRVDAPTFLEPGPDRIGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEV 294
            A  A  TR  Y+AADEV WDYAP+G        +    +A  F E GPDRIG  Y KAI+REY D++F+ L     +M H GILGP +WAEVGD I+V
Sbjct:   14 ACNAGETRVHYIAADEVIWDYAPSGINLVNGNPLLEDENAAVFFEEGPDRIGGKYLKAIFREYKDSSFNELMDDDDEMRHKGILGPIIWAEVGDTIKV 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Match: A0A1I6ZQZ9_9MICC (Multicopper oxidase n=1 Tax=Arthrobacter sp. ov118 TaxID=1761747 RepID=A0A1I6ZQZ9_9MICC)

HSP 1 Score: 95.5 bits (236), Expect = 5.170e-21
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:   10 ASTTRRVYVAADEVDWDYAPNGDKYEVDQEIDYRVDAPTFLEPGPDRIGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEV 294
            A+ TR  Y+AADEVDW+YAP+G         D    A  F E GP RIG+ Y K++YREY+D+TFS L  RS + +HLG+LGP + A VGD IEV
Sbjct:   53 AAQTRTYYIAADEVDWNYAPSGINQITGAAFD--ATAAVFTEQGPQRIGTTYIKSLYREYTDSTFSALKPRSAEDQHLGMLGPVIRAVVGDTIEV 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81304.19015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MP24_9EUKA2.210e-2353.19Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A1Q7LB78_9BACT3.260e-2252.53Copper oxidase n=2 Tax=Bacteria TaxID=2 RepID=A0A1... [more]
UPI002018F7496.140e-2251.09ceruloplasmin isoform X2 n=3 Tax=Perognathus longi... [more]
UPI00167F63941.140e-2153.26ceruloplasmin n=1 Tax=Onychomys torridus TaxID=386... [more]
UPI0003F0698C3.960e-2149.49ceruloplasmin-like n=1 Tax=Elephantulus edwardii T... [more]
A0A834AUX5_9CHIR3.970e-2151.09Ceruloplasmin n=2 Tax=Phyllostomus discolor TaxID=... [more]
A0A1U7R5I7_MESAU3.970e-2150.52ceruloplasmin n=4 Tax=Mesocricetus auratus TaxID=1... [more]
A0A6J2L0V5_9CHIR3.970e-2151.09ceruloplasmin isoform X1 n=12 Tax=Phyllostomidae T... [more]
A0A7S4HLT9_9EUKA4.700e-2151.02Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A1I6ZQZ9_9MICC5.170e-2152.63Multicopper oxidase n=1 Tax=Arthrobacter sp. ov118... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81304contigM-pyrifera_M_contig81304:559..873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score100.1
Seed ortholog evalue6.3e-19
Seed eggNOG ortholog10181.XP_004834476.1
Preferred nameCP
KEGG rclassRC02758
KEGG koko:K13624
KEGG ReactionR00078
KEGG Pathwayko00860,ko04216,map00860,map04216
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0001889,GO:0003674,GO:0003824,GO:0004322,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0006873,GO:0006875,GO:0006879,GO:0007275,GO:0007568,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0015679,GO:0016020,GO:0016491,GO:0016722,GO:0016724,GO:0019725,GO:0030001,GO:0030003,GO:0030323,GO:0030324,GO:0031224,GO:0031225,GO:0031226,GO:0031667,GO:0032501,GO:0032502,GO:0034220,GO:0035295,GO:0035434,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0044421,GO:0044425,GO:0044459,GO:0044464,GO:0046658,GO:0046688,GO:0046872,GO:0046914,GO:0046916,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0048878,GO:0050801,GO:0050896,GO:0051087,GO:0051179,GO:0051234,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0055114,GO:0060541,GO:0061008,GO:0065007,GO:0065008,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:0098771
EggNOG free text desc.Belongs to the multicopper oxidase family
EggNOG OGs35F7P@314146,38BPV@33154,3BAZ3@33208,3CW79@33213,3JF1X@40674,4832U@7711,48Y6W@7742,4Q11G@9989,COG2132@1,KOG1263@2759
EC1.16.3.1
COG Functional cat.Q
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.2915914-CDS-M-pyrifera_M_contig81304:558..8731622816719.2915914-CDS-M-pyrifera_M_contig81304:558..873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81304 559..873 +
1692278138.9082468-CDS-M-pyrifera_M_contig81304:558..8731692278138.9082468-CDS-M-pyrifera_M_contig81304:558..873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81304 559..873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81304.19015.1prot_M-pyrifera_M_contig81304.19015.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81304 559..873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81304.19015.1

>prot_M-pyrifera_M_contig81304.19015.1 ID=prot_M-pyrifera_M_contig81304.19015.1|Name=mRNA_M-pyrifera_M_contig81304.19015.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
AAEASTTRRVYVAADEVDWDYAPNGDKYEVDQEIDYRVDAPTFLEPGPDR
IGSVYKKAIYREYSDATFSNLATRSRDMEHLGILGPTVWAEVGDIIEVWT
LGTGT
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mRNA from alignment at M-pyrifera_M_contig81304:559..873+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81304.19015.1 ID=mRNA_M-pyrifera_M_contig81304.19015.1|Name=mRNA_M-pyrifera_M_contig81304.19015.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig81304:559..873+ (Macrocystis pyrifera P11B4 male)
GCGGCGGAAGCCAGCACTACCAGGCGGGTGTATGTTGCTGCTGATGAAGT
GGACTGGGACTACGCCCCCAACGGGGACAAGTATGAAGTGGACCAAGAGA
TCGACTACAGGGTAGATGCCCCCACCTTCCTAGAACCGGGACCGGACCGC
ATTGGTTCTGTATACAAGAAGGCTATCTACAGAGAGTATTCGGACGCCAC
CTTCTCCAACCTGGCGACGCGTTCGCGAGACATGGAGCACCTGGGAATCC
TGGGGCCCACGGTCTGGGCCGAGGTTGGTGACATCATTGAGGTATGGACT
CTGGGCACCGGTACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81304:559..873+

>mRNA_M-pyrifera_M_contig81304.19015.1 ID=mRNA_M-pyrifera_M_contig81304.19015.1|Name=mRNA_M-pyrifera_M_contig81304.19015.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig81304:559..873+ (Macrocystis pyrifera P11B4 male)
GCGGCGGAAGCCAGCACTACCAGGCGGGTGTATGTTGCTGCTGATGAAGT
GGACTGGGACTACGCCCCCAACGGGGACAAGTATGAAGTGGACCAAGAGA
TCGACTACAGGGTAGATGCCCCCACCTTCCTAGAACCGGGACCGGACCGC
ATTGGTTCTGTATACAAGAAGGCTATCTACAGAGAGTATTCGGACGCCAC
CTTCTCCAACCTGGCGACGCGTTCGCGAGACATGGAGCACCTGGGAATCC
TGGGGCCCACGGTCTGGGCCGAGGTTGGTGACATCATTGAGGTATGGACT
CTGGGCACCGGTACCGCGGCGGAAGCCAGCACTACCAGGCGGGTGTATGT
TGCTGCTGATGAAGTGGACTGGGACTACGCCCCCAACGGGGACAAGTATG
AAGTGGACCAAGAGATCGACTACAGGGTAGATGCCCCCACCTTCCTAGAA
CCGGGACCGGACCGCATTGGTTCTGTATACAAGAAGGCTATCTACAGAGA
GTATTCGGACGCCACCTTCTCCAACCTGGCGACGCGTTCGCGAGACATGG
AGCACCTGGGAATCCTGGGGCCCACGGTCTGGGCCGAGGTTGGTGACATC
ATTGAGGTATGGACTCTGGGCACCGGTACC
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