mRNA_M-pyrifera_M_contig81301.19012.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81301.19012.1
Unique NamemRNA_M-pyrifera_M_contig81301.19012.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81301.19012.1 vs. uniprot
Match: A0A848V7R8_9GAMM (Uncharacterized protein n=1 Tax=Woeseia sp. TaxID=1980636 RepID=A0A848V7R8_9GAMM)

HSP 1 Score: 169 bits (429), Expect = 4.100e-52
Identity = 86/139 (61.87%), Postives = 104/139 (74.82%), Query Frame = 1 
Query:    1 MNEESNDAVELALDFVQALTKRKYEEAFSMTSADFVEEGGNPLNLESLREKFESIVSVDWAFVDMKGFYDAESPPEHLQ--------------------PDVAFIYVSIADNAEGQGLSVFITREASSLKIREITFGRP 357
            M +ESNDAV+LALDFV+ALT+R+Y+ AF+MTSADFVE+GGNPL+L +LRE+FE IV  DW FVDM+  Y A  PPEHL+                    PDVAF+YVSIADN EG+GLSVF+TR+ + LKIREITFGRP
Sbjct:    1 MTDESNDAVKLALDFVEALTQREYDVAFAMTSADFVEDGGNPLSLNALREQFEMIVPTDWVFVDMEAIYAANPPPEHLRAKHIRGPLAIMEAETDWVDDPDVAFMYVSIADNVEGEGLSVFVTRDLTGLKIREITFGRP 139
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81301.19012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A848V7R8_9GAMM4.100e-5261.87Uncharacterized protein n=1 Tax=Woeseia sp. TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81301contigM-pyrifera_M_contig81301:345..764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.185305-CDS-M-pyrifera_M_contig81301:344..5791622816719.185305-CDS-M-pyrifera_M_contig81301:344..579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81301 345..579 +
1692278138.845768-CDS-M-pyrifera_M_contig81301:344..5791692278138.845768-CDS-M-pyrifera_M_contig81301:344..579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81301 345..579 +
1622816719.195995-CDS-M-pyrifera_M_contig81301:639..7641622816719.195995-CDS-M-pyrifera_M_contig81301:639..764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81301 640..764 +
1692278138.8563874-CDS-M-pyrifera_M_contig81301:639..7641692278138.8563874-CDS-M-pyrifera_M_contig81301:639..764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81301 640..764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81301.19012.1prot_M-pyrifera_M_contig81301.19012.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81301 345..764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81301.19012.1

>prot_M-pyrifera_M_contig81301.19012.1 ID=prot_M-pyrifera_M_contig81301.19012.1|Name=mRNA_M-pyrifera_M_contig81301.19012.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MNEESNDAVELALDFVQALTKRKYEEAFSMTSADFVEEGGNPLNLESLRE
KFESIVSVDWAFVDMKGFYDAESPPEHLQPDVAFIYVSIADNAEGQGLSV
FITREASSLKIREITFGRP*
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mRNA from alignment at M-pyrifera_M_contig81301:345..764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81301.19012.1 ID=mRNA_M-pyrifera_M_contig81301.19012.1|Name=mRNA_M-pyrifera_M_contig81301.19012.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig81301:345..764+ (Macrocystis pyrifera P11B4 male)
ATGAATGAAGAATCGAACGATGCGGTGGAATTGGCGCTGGACTTTGTACA
AGCGTTGACAAAACGCAAGTATGAGGAAGCGTTTTCGATGACATCCGCGG
ATTTTGTTGAGGAAGGAGGCAATCCACTTAATCTCGAATCTTTACGCGAG
AAATTCGAATCGATCGTTTCAGTCGACTGGGCATTTGTAGATATGAAGGG
GTTCTATGACGCGGAATCCCCGCCCGAACATCTGCGTCCCAAATACATAC
GCGGTCCTCTCGCGATCATGGAGGTGGAAACGGACTGGGTCGAAGAACCC
GACGTGGCCTTTATATACGTCTCAATCGCCGATAATGCCGAAGGTCAAGG
TCTTAGTGTCTTTATAACGCGCGAGGCGTCGAGTTTAAAAATCCGCGAAA
TCACTTTCGGGCGACCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81301:345..764+

>mRNA_M-pyrifera_M_contig81301.19012.1 ID=mRNA_M-pyrifera_M_contig81301.19012.1|Name=mRNA_M-pyrifera_M_contig81301.19012.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig81301:345..764+ (Macrocystis pyrifera P11B4 male)
ATGAATGAAGAATCGAACGATGCGGTGGAATTGGCGCTGGACTTTGTACA
AGCGTTGACAAAACGCAAGTATGAGGAAGCGTTTTCGATGACATCCGCGG
ATTTTGTTGAGGAAGGAGGCAATCCACTTAATCTCGAATCTTTACGCGAG
AAATTCGAATCGATCGTTTCAGTCGACTGGGCATTTGTAGATATGAAGGG
GTTCTATGACGCGGAATCCCCGCCCGAACATCTGCATGAATGAAGAATCG
AACGATGCGGTGGAATTGGCGCTGGACTTTGTACAAGCGTTGACAAAACG
CAAGTATGAGGAAGCGTTTTCGATGACATCCGCGGATTTTGTTGAGGAAG
GAGGCAATCCACTTAATCTCGAATCTTTACGCGAGAAATTCGAATCGATC
GTTTCAGTCGACTGGGCATTTGTAGATATGAAGGGGTTCTATGACGCGGA
ATCCCCGCCCGAACATCTGCAACCCGACGTGGCCTTTATATACGTCTCAA
TCGCCGATAATGCCGAAGGTCAAGGTCTTAGTGTCTTTATAACGCGCGAG
GCGTCGAGTTTAAAAATCCGCGAAATCACTTTCGGGCGACCTTGAAACCC
GACGTGGCCTTTATATACGTCTCAATCGCCGATAATGCCGAAGGTCAAGG
TCTTAGTGTCTTTATAACGCGCGAGGCGTCGAGTTTAAAAATCCGCGAAA
TCACTTTCGGGCGACCTTGA
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