mRNA_M-pyrifera_M_contig81262.19005.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81262.19005.1
Unique NamemRNA_M-pyrifera_M_contig81262.19005.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81262.19005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81262contigM-pyrifera_M_contig81262:110..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue5.2e-08
Seed eggNOG ortholog4787.PITG_02661T0
KEGG koko:K11857
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGs3Q9KC@4776,COG5077@1,KOG4598@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons3
Model size324
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81262.19005.1prot_M-pyrifera_M_contig81262.19005.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81262 110..577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.614216-CDS-M-pyrifera_M_contig81262:109..1851622816718.614216-CDS-M-pyrifera_M_contig81262:109..185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81262 110..185 +
1692278138.396835-CDS-M-pyrifera_M_contig81262:109..1851692278138.396835-CDS-M-pyrifera_M_contig81262:109..185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81262 110..185 +
1622816718.6260207-CDS-M-pyrifera_M_contig81262:272..4011622816718.6260207-CDS-M-pyrifera_M_contig81262:272..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81262 273..401 +
1692278138.4139597-CDS-M-pyrifera_M_contig81262:272..4011692278138.4139597-CDS-M-pyrifera_M_contig81262:272..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81262 273..401 +
1622816718.6397212-CDS-M-pyrifera_M_contig81262:458..5771622816718.6397212-CDS-M-pyrifera_M_contig81262:458..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81262 459..577 +
1692278138.4302118-CDS-M-pyrifera_M_contig81262:458..5771692278138.4302118-CDS-M-pyrifera_M_contig81262:458..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81262 459..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81262.19005.1

>prot_M-pyrifera_M_contig81262.19005.1 ID=prot_M-pyrifera_M_contig81262.19005.1|Name=mRNA_M-pyrifera_M_contig81262.19005.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
PTPFQARFEAERSVIRVQFNAPPIEARRSDSVMALKERIGEVLGCDAGEF
HLKMNARGKMIKDEKRPLVSGLGLTDNSIVHVVPGPPLRPGEFLFKIVLY
NATARKSA
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mRNA from alignment at M-pyrifera_M_contig81262:110..577+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81262.19005.1 ID=mRNA_M-pyrifera_M_contig81262.19005.1|Name=mRNA_M-pyrifera_M_contig81262.19005.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig81262:110..577+ (Macrocystis pyrifera P11B4 male)
CCAACACCATTTCAAGCCAGGTTTGAAGCAGAACGGTCGGTGATTCGAGT
GCAATTCAATGCACCACCGATTGAAGGTGCCACTGGCGAATCTGATCCAA
CCAAGAGGGTGGATGGGGGGATGGATGAGTTTGGTGCACCAGCCTACTCC
TTCTCCGTGCTAGCACGCCGGTCTGATTCCGTAATGGCACTGAAGGAGCG
AATTGGAGAAGTGTTGGGTTGTGATGCTGGAGAGTTTCACCTCAAGATGA
ACGCGAGAGGAAAGATGATCAAAGACGAGAAGCGTCCTCTTGGTGCTGGG
GAAGTGGAAGTGTTTGAAGAAGGAGAGGAAGACAAGGGTGGAAGAAAAGT
GAGTGGTCTCGGGTTGACAGATAATTCCATTGTCCATGTTGTCCCAGGCC
CTCCACTTCGTCCTGGAGAATTCCTCTTCAAGATTGTCTTATACAACGCG
ACTGCACGCAAGTCTGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81262:110..577+

>mRNA_M-pyrifera_M_contig81262.19005.1 ID=mRNA_M-pyrifera_M_contig81262.19005.1|Name=mRNA_M-pyrifera_M_contig81262.19005.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig81262:110..577+ (Macrocystis pyrifera P11B4 male)
CCAACACCATTTCAAGCCAGGTTTGAAGCAGAACGGTCGGTGATTCGAGT
GCAATTCAATGCACCACCGATTGAAGCCAACACCATTTCAAGCCAGGTTT
GAAGCAGAACGGTCGGTGATTCGAGTGCAATTCAATGCACCACCGATTGA
AGCACGCCGGTCTGATTCCGTAATGGCACTGAAGGAGCGAATTGGAGAAG
TGTTGGGTTGTGATGCTGGAGAGTTTCACCTCAAGATGAACGCGAGAGGA
AAGATGATCAAAGACGAGAAGCGTCCTCTTGCACGCCGGTCTGATTCCGT
AATGGCACTGAAGGAGCGAATTGGAGAAGTGTTGGGTTGTGATGCTGGAG
AGTTTCACCTCAAGATGAACGCGAGAGGAAAGATGATCAAAGACGAGAAG
CGTCCTCTTGTGAGTGGTCTCGGGTTGACAGATAATTCCATTGTCCATGT
TGTCCCAGGCCCTCCACTTCGTCCTGGAGAATTCCTCTTCAAGATTGTCT
TATACAACGCGACTGCACGCAAGTCTGCTTGAGTGGTCTCGGGTTGACAG
ATAATTCCATTGTCCATGTTGTCCCAGGCCCTCCACTTCGTCCTGGAGAA
TTCCTCTTCAAGATTGTCTTATACAACGCGACTGCACGCAAGTCTGCT
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