mRNA_M-pyrifera_M_contig8125.19002.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8125.19002.1
Unique NamemRNA_M-pyrifera_M_contig8125.19002.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8125.19002.1 vs. uniprot
Match: A0A6H5JVG6_9PHAE (TP_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.860e-13
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 2 
Query:    2 AAAMAALEARLTELTAGGMSTSSAVKMASKDLNMKKSDVYRVALAL 139
            A A+ ALEARLTELTAGGMSTSSAVKMASKDLN+KKSDVYRVAL+L
Sbjct:  499 ARALEALEARLTELTAGGMSTSSAVKMASKDLNLKKSDVYRVALSL 544
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BLAST of mRNA_M-pyrifera_M_contig8125.19002.1 vs. uniprot
Match: D8LLL3_ECTSI (TP_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL3_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.740e-13
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 2 
Query:    2 AAAMAALEARLTELTAGGMSTSSAVKMASKDLNMKKSDVYRVALALTLPPSHKGAKG 172
            A A+ ALEARLTELTAGGMSTSSAVKM SKDLN+KKSDVYRVAL+L  P S K   G
Sbjct:  499 ARALEALEARLTELTAGGMSTSSAVKMVSKDLNLKKSDVYRVALSLR-PSSVKEDDG 554
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8125.19002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVG6_9PHAE1.860e-1389.13TP_methylase domain-containing protein n=1 Tax=Ect... [more]
D8LLL3_ECTSI4.740e-1377.19TP_methylase domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8125contigM-pyrifera_M_contig8125:3530..5148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue5.2e-11
Seed eggNOG ortholog2880.D8LLL3
KEGG koko:K07056
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetrapyrrole (Corrin/Porphyrin) Methylases
EggNOG OGs2QQ7V@2759,COG0313@1
EC2.1.1.198
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons2
Model size243
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8125.19002.1prot_M-pyrifera_M_contig8125.19002.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8125 3565..5138 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.4783154-UTR-M-pyrifera_M_contig8125:3529..35641622816718.4783154-UTR-M-pyrifera_M_contig8125:3529..3564Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8125 3530..3564 -
1692278138.3016295-UTR-M-pyrifera_M_contig8125:3529..35641692278138.3016295-UTR-M-pyrifera_M_contig8125:3529..3564Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8125 3530..3564 -
1622816718.5128567-UTR-M-pyrifera_M_contig8125:5138..51481622816718.5128567-UTR-M-pyrifera_M_contig8125:5138..5148Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8125 5139..5148 -
1692278138.3368056-UTR-M-pyrifera_M_contig8125:5138..51481692278138.3368056-UTR-M-pyrifera_M_contig8125:5138..5148Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8125 5139..5148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.490286-CDS-M-pyrifera_M_contig8125:3564..37421622816718.490286-CDS-M-pyrifera_M_contig8125:3564..3742Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8125 3565..3742 -
1692278138.3141382-CDS-M-pyrifera_M_contig8125:3564..37421692278138.3141382-CDS-M-pyrifera_M_contig8125:3564..3742Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8125 3565..3742 -
1622816718.5022268-CDS-M-pyrifera_M_contig8125:5118..51381622816718.5022268-CDS-M-pyrifera_M_contig8125:5118..5138Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8125 5119..5138 -
1692278138.3245027-CDS-M-pyrifera_M_contig8125:5118..51381692278138.3245027-CDS-M-pyrifera_M_contig8125:5118..5138Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8125 5119..5138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8125.19002.1

>prot_M-pyrifera_M_contig8125.19002.1 ID=prot_M-pyrifera_M_contig8125.19002.1|Name=mRNA_M-pyrifera_M_contig8125.19002.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MAALEARLTELTAGGMSTSSAVKMASKDLNMKKSDVYRVALALTLPPSHK
GAKGSAAKGPWGAGS*
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mRNA from alignment at M-pyrifera_M_contig8125:3530..5148-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8125.19002.1 ID=mRNA_M-pyrifera_M_contig8125.19002.1|Name=mRNA_M-pyrifera_M_contig8125.19002.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1619bp|location=Sequence derived from alignment at M-pyrifera_M_contig8125:3530..5148- (Macrocystis pyrifera P11B4 male)
GGCAGCGGCGATGGCGGCACTGGAGGCTAGGTGAGGCGTAGGAGGCGGGC
AGGGTTAAGGGGGGGAGGGGGGGTAGGGGGAGGGGTTATACGCATGTCAT
GCATGGCCGTAGTCGTATGACCATAAATCCTCGCATATCTAATGCCGGGA
TGGATCCCACCTCGGGTTTTCACCGACCAGACAGATATGATTGCACCAGG
CGGGGGGGGCAGACAAGGGATTGGGGGGGGGGGTGTGACGGGGTCAAGGG
GCGGGGGGTGGGGTCGGGGACTAGAAAGGGGAAGGGGTTGAGATTGCTGT
TGGTGAGTACTGTACGTAGCCGCTGGGACTAGAGGCTCGCGGAGTTTTGG
AGGCCGGGGAATGCCACTGCTTTTTTGCTTGTGTGTGATGTGTGTCGTCG
TTTTTTGGGTGGTGCCGCCAAGAGTTGTTGCGGCGGGATGATGTAGTGGT
GGAGGTGGGTGTGGAGGACAGTTGTAGCGGAAGACGGCGCGCAGTACTTG
CGTTTTGTTGTCAGTTGGTTTTTGTTTTGATATGAAATCGGCTGAGATGC
TTGTAGGGCGCGGGGGCAGGGTTGCCACGTATGAGCACGAGTATGTATAG
AAAAAAATCCCACCAACCTACCAACCTAGGTTGGGTTGCTGATGTAGCAA
CACGCCTACTGGTAGTTTGTCTAGGCAAGATTGTCAGGAAGAGTACACAC
TCTGGGTGTGGTGGATGGTTTTGGTGAGGATGTAGAAACAACGGTTAAAA
ATGTCAGAAAACAACAACCACACACACCTCCTCCGTTCGGCGTGCAGGAG
AGCGAGCAGACCAGATATACGATTCTATTTATGTGGGGGAGACCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCGGTTTGTTTTTTTTTTTCTTTCTC
CCCCCCCCCTGAAGGGTGTTTCTCCCCCCCCCTTTTTTTCACCCCCCGCG
GCCCCNNNNNNNNNNCTTTCCAGCCCACTCGTAGGAGGTTTTACCCTCAG
CGATCTTCTGGACAAGCCGTGGTCACAGGTGACACCCCTTCTGTTCGTGC
CTTCATTTTTTTTTCGCGCATACTAATATTAGGGTTCAGCATTCCCACTG
CTCGTCCATTTTCATCGAATGTTGGTAACTCACGCTCTCGCGCTTTCTGC
ACACCATTTTTTTATGCAAGGAAAAGTCCTCACGAGTACGCACTCGGTGA
GACTTGAACCAACGAAATTGATCTTAGTAGGCGCGCGGACCACCCACCAA
GCCACCGGGACATTGTAGGGATGCGAGGGTCCATCGTCATACGACTACGG
CCATGCATGACATTAGTACCCCGCCCCGTCTGGCCTCCCCTAACCCAACC
CTCCACCCACACCCGTTTCTCTCAAACACCTCAACCTATTAATCGTGTTT
TTCCAGACTGACGGAGCTGACGGCGGGAGGAATGAGCACGTCGTCGGCCG
TGAAGATGGCCTCAAAGGACCTCAACATGAAGAAGTCGGACGTGTATCGA
GTAGCGCTAGCCTTGACCCTGCCCCCGTCGCACAAAGGAGCCAAGGGATC
GGCGGCAAAAGGACCCTGGGGGGCGGGGTCCTGACTGTTACTCACAAGCT
TGTTACGAGCGAAATGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8125:3530..5148-

>mRNA_M-pyrifera_M_contig8125.19002.1 ID=mRNA_M-pyrifera_M_contig8125.19002.1|Name=mRNA_M-pyrifera_M_contig8125.19002.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig8125:3530..5148- (Macrocystis pyrifera P11B4 male)
ATGGCGGCACTGGAGGCTAGATGGCGGCACTGGAGGCTAGACTGACGGAG
CTGACGGCGGGAGGAATGAGCACGTCGTCGGCCGTGAAGATGGCCTCAAA
GGACCTCAACATGAAGAAGTCGGACGTGTATCGAGTAGCGCTAGCCTTGA
CCCTGCCCCCGTCGCACAAAGGAGCCAAGGGATCGGCGGCAAAAGGACCC
TGGGGGGCGGGGTCCTGAACTGACGGAGCTGACGGCGGGAGGAATGAGCA
CGTCGTCGGCCGTGAAGATGGCCTCAAAGGACCTCAACATGAAGAAGTCG
GACGTGTATCGAGTAGCGCTAGCCTTGACCCTGCCCCCGTCGCACAAAGG
AGCCAAGGGATCGGCGGCAAAAGGACCCTGGGGGGCGGGGTCCTGA
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