mRNA_M-pyrifera_M_contig81244.18999.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81244.18999.1
Unique NamemRNA_M-pyrifera_M_contig81244.18999.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Match: A0A085MVT7_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MVT7_9BILA)

HSP 1 Score: 162 bits (409), Expect = 3.200e-41
Identity = 104/277 (37.55%), Postives = 155/277 (55.96%), Query Frame = 1
Query:   34 LWHRRWAHCDKTMLGRL--PDAVVGMAIKGKD-PSPLCPPCLKGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPF-VESISGHKFFMIVRDLGSRYLSGFFLKTKDQALVSFQGY-AKLLR--GKLSSV-RLDNG-ELRSGAMSDFCRAEGIRIEPTVPRTPQQNPV-ETDIRTIVADVRVMLNDAELPHPYWEYAVRTSVWYRNRSLRGQLQRTPFELYFGSKPDVSRARVWGCLAYAHVSGDKA-KLQDRAIEVIFLGFADNSTGYLVQDPNVSNV 831
            LWHRR+ H D   + +L      VG+ I   D   P+C  C KGKM A P P   + R   P   +  DLCGP  VE+ SGH++F+ + D  SR+     LK+KD+   + + Y AK+    G+   + R DNG E  + ++  + + +GI  + T+P TPQQN V E   R++   VR ML+DA LP  +W  AV T+ + +NR     + +TPFE ++G KPDVS  RV+G  AY+ V  ++  KL ++AIE + +G+ +   GY + DP  + V
Sbjct:  242 LWHRRFGHRDFDAIQKLWKRKMAVGLRINEHDCGKPICETCFKGKMTAFPFPK-GETRANKPMELIHSDLCGPMPVETPSGHRYFLTLIDDHSRFTVVHLLKSKDEVFDAIKNYIAKMCNRFGRKPMIFRSDNGREYVTKSLETYFKLQGIEHQLTIPYTPQQNGVAERKNRSLTEMVRCMLSDARLPIRFWGEAVLTAAYLQNRLPSRSIPKTPFEHFYGHKPDVSHLRVFGSKAYSFVPTERRRKLSEKAIEGVIIGYGNTVKGYRILDPKTARV 517          
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Match: A0A8D8MF92_CULPI (Copia protein (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8MF92_CULPI)

HSP 1 Score: 152 bits (384), Expect = 2.470e-39
Identity = 97/281 (34.52%), Postives = 150/281 (53.38%), Query Frame = 1
Query:   34 LWHRRWAHCDKTMLGRL--PDAVVGMAIK--GKDPSPLCPPCLKGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPFV-ESISGHKFFMIVRDLGSRYLSGFFLKTKDQALVSFQGYAKLLRGK----LSSVRLDNG-ELRSGAMSDFCRAEGIRIEPTVPRTPQQNPVETDI-RTIVADVRVMLNDAELPHPYWEYAVRTSVWYRNRSLRGQLQ--RTPFELYFGSKPDVSRARVWGCLAYAHVSGD-KAKLQDRAIEVIFLGFADNSTGYLVQDPNVSNVV 834
            LWHRR+ H ++  L  L   + V G+ +   G D + +C  C+ GK   KP P     R       V  D+CGP   E + G K+F+   D  + ++  + +++KD+ +  F+ Y  L+  K    +S ++ DNG E R+     FC+ +GIR+EPTVP TP+ NP+   + RT+V   R ML DA +   +W   + T+ +  NRS    L+  +TP+EL+   KPDVS  RV+G   + HV  + + KL D+A +   +G++ N  GY V DP    VV
Sbjct:  157 LWHRRFGHLNEQSLKCLVQKEMVSGLDLSTAGTDDTVVCESCVVGKQTRKPHPPREGRRSSRVLELVHTDVCGPVSPEGLDGMKYFVTFIDDWTHFVMVYLIRSKDEVMECFEEYEALVTAKFERPISRLKCDNGGEYRNKRFEGFCKKKGIRMEPTVPYTPEMNPLSERMNRTLVEKARAMLADAGVDKKFWGETMLTAAYLTNRSPTAALEMKKTPYELWESKKPDVSNIRVFGSDVFVHVPKELRRKLDDKAWKGTLVGYSHN--GYRVWDPKKRTVV 435          
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Match: A0A8D8CEN3_CULPI (Copia protein (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8CEN3_CULPI)

HSP 1 Score: 150 bits (378), Expect = 5.150e-39
Identity = 104/298 (34.90%), Postives = 159/298 (53.36%), Query Frame = 1
Query:   16 SVANIHLWHRRWAHCDKTMLGRL--PDAVVGMAIKGKDPSP---LCPPCLKGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPF-VESISGHKFFMIVRDLGSRYLSGFFLKTKDQALVSFQGYAKLLRG----KLSSVRLDNG-ELRSGAMSDFCRAEGIRIEPTVPRTPQQN-PVETDIRTIVADVRVMLNDAELPHPYWEYAVRTSVWYRNRSLRGQLQ--RTPFELYFGSKPDVSRARVWGCLAYAHVSGDK-AKLQDRAIEVIFLGFADNSTGYLVQDPNVSNVVRVVRTLKCDE 864
            S + + LWHRR+ H   T L +L   + V G+ + GK+  P   +C  C+KGK    P     +PR   P   +  D+CGPF   S +G K F+   D  + + + + L+ K + L +F+ YA +       K++ +R DNG E  +     +C   GI +EPTVP TP+QN   E   RT++   R M+ DAE+    W  AV  +V   NRS    L+  +TP+E++FG KP+VS+ RV+G  AY H+  +K +KL  ++   + +G+  N  GY + DP V   V V R +K +E
Sbjct:   86 SESKLSLWHRRYGHIGNTGLMKLIRNEMVEGLDV-GKNAKPEKEICECCMKGKQARLPFEEATKPRSSRPLELIHSDVCGPFNPASWNGKKMFVSFIDDYTHFAAVYILEAKSEVLDAFRKYAAMATAHFGTKIARLRSDNGREYINTEFKKYCDDAGIVMEPTVPYTPEQNGKSERFNRTVMERARAMMEDAEIYWYMWSEAVLAAVHVINRSPTAALRDAKTPYEMWFGRKPNVSKLRVFGSKAYTHIPKEKRSKLSAKSHVCVLVGYGMN--GYRLWDP-VKKQVIVARDVKVEE 379          
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Match: B2CN78_DAPPU (Integrase n=1 Tax=Daphnia pulex TaxID=6669 RepID=B2CN78_DAPPU)

HSP 1 Score: 154 bits (389), Expect = 9.020e-39
Identity = 101/292 (34.59%), Postives = 153/292 (52.40%), Query Frame = 1
Query:   25 NIHLWHRRWAH--CDKTMLGRLPDAVVGMAIKGKD--PSPLCPPCLKGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPF-VESISGHKFFMIVRDLGSRYLSGFFLKTKDQALVSFQGYAKLL----RGKLSSVRLDNG-ELRSGAMSDFCRAEGIRIEPTVPRTPQQNPV-ETDIRTIVADVRVMLNDAELPHPYWEYAVRTSVWYRNRSLRGQLQRTPFELYFGSKPDVSRARVWGCLAYAHVSG-DKAKLQDRAIEVIFLGFADNSTGYLVQDPNVSNVVRVVRTLKCDE 864
            ++ +WH+R+AH  C K         V G+ I      PS  CP C+ GKM+  P PT  + R    G  +  D+CGP  VE+  G KFF++  D  S + + +FLK K +    F+ YA+ L    R K+ ++R DNG E    +   +   +GIR E + P TP+QN V E   RTIV   R +L+   LP   W  A+  +V+  NR        TPF+ ++G+KPDVS  R++G  AY HV   ++ KL  +++   F+G++D+   Y   DP +S  ++  R +  DE
Sbjct:  415 SLAVWHQRFAHVSCRKIAKMAAQQLVKGLTIPANAVIPSQPCPGCIAGKMERSPFPT-GRTRAVQIGQLIHSDVCGPMHVETPGGAKFFVMFTDDYSGFRTVYFLKFKSEVADCFKDYAEHLHTETRQKIHTLRKDNGGEYTGHSFRAWLSEQGIRYETSAPHTPEQNGVSERANRTIVEGARSLLHAKHLPLELWGEAISCAVYVLNRVTSKAAPNTPFQNWYGTKPDVSNLRIFGSTAYIHVPKIERRKLDSKSLRCYFVGYSDSQKAYRFWDP-ISRKIKTSRDVIFDE 704          
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR)

HSP 1 Score: 151 bits (382), Expect = 1.040e-38
Identity = 98/281 (34.88%), Postives = 146/281 (51.96%), Query Frame = 1
Query:   25 NIHLWHRRWAHCDKTMLGRLPD--AVVGMAIKGKDPSPLCPPCLKGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPF-VESISGHKFFMIVRDLGSRYLSGFFLKTKDQALVSFQGYAKLLRGKLSS----VRLDNG-ELRSGAMSDFCRAEGIRIEPTVPRTPQQNPV-ETDIRTIVADVRVMLNDAELPHPYWEYAVRTSVWYRNRSLRGQLQR-TPFELYFGSKPDVSRARVWGCLAYAHVSGDKA-KLQDRAIEVIFLGFADNSTGYLVQDPNVSNVV 834
            +I +WH R  H  K  +  +     V G++        +C  C KGKM  +P P T+  R       V  D+CGP   ++ SG ++F+   D  SR+   + L+ K +    F     L+    S+    +R D G E RS   + FC+ +GI  + T   TPQQN V E   RTIV   R ML  A+L + YW+ AV+T+V+ +NRS    L   TP+E +FG KPD+S  RV+GC AYAH+  +K  KL   + + IFLG++++   Y +Q+     +V
Sbjct:  112 SIEIWHHRLGHISKDTIRHMMTNKMVDGLSYSDITKDTVCEGCAKGKMSRRPFPNTSTNRSTKTLQLVHTDVCGPMQTKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTKALTNITPYEAWFGKKPDLSNLRVFGCQAYAHILIEKRQKLDANSTKCIFLGYSESIKAYRLQEVKTGKLV 392          
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Match: UPI001F00A048 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F00A048)

HSP 1 Score: 154 bits (388), Expect = 2.050e-38
Identity = 108/281 (38.43%), Postives = 148/281 (52.67%), Query Frame = 1
Query:   22 ANIHLWHRRWAHCDKTMLGRLPDAVVGMAIKGKDPSPLCPPCLKGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPF-VESISGHKFFMIVRDLGSRYLSGFFLKTKDQALVSFQGYAKLLRG----KLSSVRLDNG-ELRSGAMSDFCRAEGIRIEPTVPRTPQQNPV-ETDIRTIVADVRVMLNDAELPHPYWEYAVRTSVWYRNRSLRGQLQ-RTPFELYFGSKPDVSRARVWGCLAYAHVSGD-KAKLQDRAIEVIFLGFADNSTGYLVQDPNVSNVVR 837
            A+ +LWH+R  H  +  L  L    +    K     P C  CL GK       +++  R     S V  D+CGP  VES+ G+++F+   D  SR +  +FL+TKDQ    F+ +  ++      KL  +R DNG E  S     +CR+ GIR E TVPRTPQ N V E   RTI+  VR ML+ A+LP P+W  AVR + +  NRS    L    P +L+ G  P  S  RV+GCLAYAHVS + + KL  R    IF+G+ D   GY + DP    ++R
Sbjct:  249 ASQNLWHQRLGHMSEKGLSTLIKKELINVDKDAALDP-CNHCLFGKQHRVSFNSSSTKRSELL-SLVHSDVCGPLEVESLGGNRYFLTFIDDASRKVWVYFLQTKDQVFDYFKLFHVMVERETGKKLKCLRSDNGGEYSSKQFDAYCRSYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLPKPFWGEAVRAACYLINRSPSVPLDFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKIIR 527          
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Match: A0A8D8CKX4_CULPI (Copia protein (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8CKX4_CULPI)

HSP 1 Score: 150 bits (378), Expect = 3.140e-38
Identity = 104/298 (34.90%), Postives = 159/298 (53.36%), Query Frame = 1
Query:   16 SVANIHLWHRRWAHCDKTMLGRL--PDAVVGMAIKGKDPSP---LCPPCLKGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPF-VESISGHKFFMIVRDLGSRYLSGFFLKTKDQALVSFQGYAKLLRG----KLSSVRLDNG-ELRSGAMSDFCRAEGIRIEPTVPRTPQQN-PVETDIRTIVADVRVMLNDAELPHPYWEYAVRTSVWYRNRSLRGQLQ--RTPFELYFGSKPDVSRARVWGCLAYAHVSGDK-AKLQDRAIEVIFLGFADNSTGYLVQDPNVSNVVRVVRTLKCDE 864
            S + + LWHRR+ H   T L +L   + V G+ + GK+  P   +C  C+KGK    P     +PR   P   +  D+CGPF   S +G K F+   D  + + + + L+ K + L +F+ YA +       K++ +R DNG E  +     +C   GI +EPTVP TP+QN   E   RT++   R M+ DAE+    W  AV  +V   NRS    L+  +TP+E++FG KP+VS+ RV+G  AY H+  +K +KL  ++   + +G+  N  GY + DP V   V V R +K +E
Sbjct:   68 SESKLSLWHRRYGHIGNTGLMKLIRNEMVEGLDV-GKNAKPEKEICECCMKGKQARLPFEEATKPRSSRPLELIHSDVCGPFNPASWNGKKMFVSFIDDYTHFAAVYILEAKSEVLDAFRKYAAMATAHFGTKIARLRSDNGREYINTEFKKYCDDAGIVMEPTVPYTPEQNGKSERFNRTVMERARAMMEDAEIDWNKWSEAVLAAVHLINRSPTTALRDAKTPYEMWFGRKPNVSKLRVFGSKAYTHIPKEKRSKLSAKSHVCVLVGYGMN--GYRLWDP-VKKQVIVARDVKVEE 361          
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Match: A0A182GGE6_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GGE6_AEDAL)

HSP 1 Score: 152 bits (384), Expect = 6.970e-38
Identity = 98/286 (34.27%), Postives = 154/286 (53.85%), Query Frame = 1
Query:   25 NIHLWHRRWAHCDKTMLGRLP-----DAVVGMAIKGKDPSPL-CPPCLKGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPFVES-ISGHKFFMIVRDLGSRYLSGFFLKTKDQALVSFQGYAKLLRGK----LSSVRLDNG-ELRSGAMSDFCRAEGIRIEPTVPRTPQQNPVETDI-RTIVADVRVMLNDAELPHPYWEYAVRTSVWYRNR--SLRGQLQRTPFELYFGSKPDVSRARVWGCLAYAHVSGDKAKLQD-RAIEVIFLGFADNSTGYLVQDPNVSNVV 834
            ++ LWHRR+ H +K  L +L      D +      G D   + C PC+ GK   KP   +A     +      + +CGP   +  +G ++F    D  + ++  F +KTKD+ L  F+ Y  L+  K    +S ++ DNG E ++ A+  FCR +GI+++ TVP TPQQN     + RT+V  VR ML DA++   +W  A+ T+ +  NR  +      +TP EL+ G +PDVSR R +GC+AY HV  ++ K  D +A   +F+G+A N  GY V +P   ++V
Sbjct:  249 SLELWHRRFGHLNKRQLEQLVCRNLVDGMQPTQCDGSDDKVIVCEPCIIGKQSRKPF--SAHEGKRSSRVLEVIHVCGPVQPAGRNGERYFATFMDDWTHFVMTFPMKTKDEVLGWFEYYESLVTAKFGLNISRLKCDNGGEYQNKALLSFCRRKGIQVDFTVPYTPQQNGTSERMNRTLVERVRAMLEDAKIEKVFWVQAIETAAYIVNRCPTSANDSGKTPVELWNGRRPDVSRLRTFGCVAYVHVPKERRKKLDAKAWRGVFVGYAPN--GYRVWNPKTGSIV 530          
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Match: A0A6V7M0T8_9HYME (Uncharacterized protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M0T8_9HYME)

HSP 1 Score: 152 bits (383), Expect = 9.620e-38
Identity = 95/279 (34.05%), Postives = 146/279 (52.33%), Query Frame = 1
Query:   28 IHLWHRRWAHCDKTMLGRL--PDAVVGMAIKGKDPSPLCPPCLKGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPF-VESISGHKFFMIVRDLGSRYLSGFFL--KTKDQALV-SFQGYAKLLRG-KLSSVRLDNG-ELRSGAMSDFCRAEGIRIEPTVPRTPQQNPV-ETDIRTIVADVRVMLNDAELPHPYWEYAVRTSVWYRNRSLRGQLQRTPFELYFGSKPDVSRARVWGCLAYAHVSGD-KAKLQDRAIEVIFLGFADNSTGYLVQDPNVSNVV 834
            IH WHRR+ H D   + +L   +   G+ IK  +   +C  C+KGK+  KP P  +  +       + +DLCGP   +++ G ++ M + D  SRY   + L  K++D+ ++  F    K   G K    R D G E  S  +  F   +G++++ T P TP+QN V E   RT+V   R ML DA L   YW  AV T+ + +N        +TPFEL+F  KPD+S  RV+GC AYAH+    + KL ++  E IF+G++  S  Y + + N   ++
Sbjct:  311 IHTWHRRFGHRDPKAIEKLIENELAEGVEIKKCNEIQVCSSCIKGKLSRKPFPKESLSKTTKRLELLHMDLCGPMPTKTVGGRRYLMTIIDDFSRYTFVYLLTEKSQDERVIRDFIAEMKTQYGEKPKCFRSDRGGEFMSHDLMQFLAKQGVKVQRTAPYTPEQNGVAERKNRTLVEATRTMLIDAGLADQYWGEAVMTAGYVQNLLPTRVRDKTPFELFFDKKPDISHLRVYGCKAYAHIPKQMRLKLDNKTRECIFVGYSQESKAYRLLEENTGKIL 589          
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT)

HSP 1 Score: 151 bits (381), Expect = 1.780e-37
Identity = 92/284 (32.39%), Postives = 147/284 (51.76%), Query Frame = 1
Query:   19 VANIHLWHRRWAHCDKTMLGRLPDA--VVGMAIKGKDPSPLCPPCLKGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPF-VESISGHKFFMIVRDLGSRYLSGFFLKTKDQALVSFQGYAKLLRG----KLSSVRLDNG-ELRSGAMSDFCRAEGIRIEPTVPRTPQQNPVETDI-RTIVADVRVMLNDAELPHPYWEYAVRTSVWYRNRSLRGQLQ-RTPFELYFGSKPDVSRARVWGCLAYAHVSGD-KAKLQDRAIEVIFLGFADNSTGYLVQDPNVSNVVR 837
            V  +  WH R+ H +   + +L     V GM     + S  C  C + KM   P+P  +  R   P   +  D+CGP   +SI G K+ +   D  +RY++ +FLK K +    FQ Y  ++      K+ ++R DNG E  S   S +C  +GI  + + P TPQQN V   + RT++   + M+  A +P  +W  AV T+V+  NRS    L  +TP+EL+F  KPDVS  +V+G + + H+  + + KL  R+ + +F+G+  ++ GY + D    N VR
Sbjct:  368 VPTLREWHCRYGHLNFGYINKLAQGNLVTGMKYTKGETSQECEACTRAKMHRIPVPKQSSNRTTQPLELIHSDVCGPMNTDSIGGSKYILTFTDDYTRYVTVYFLKNKSEVYEKFQEYVSMVENFTGLKVKTLRTDNGGEYVSNDFSKYCVNKGIVHQYSNPYTPQQNGVSERLNRTLMESAKSMIFHANMPINFWAEAVNTAVYLHNRSPTTSLNMKTPYELWFSKKPDVSNLKVFGSVCFIHIPSNLRRKLDPRSRKAVFIGYPLDTKGYKLYDIESKNFVR 651          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81244.18999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A085MVT7_9BILA3.200e-4137.55Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
A0A8D8MF92_CULPI2.470e-3934.52Copia protein (Fragment) n=1 Tax=Culex pipiens Tax... [more]
A0A8D8CEN3_CULPI5.150e-3934.90Copia protein (Fragment) n=1 Tax=Culex pipiens Tax... [more]
B2CN78_DAPPU9.020e-3934.59Integrase n=1 Tax=Daphnia pulex TaxID=6669 RepID=B... [more]
A0A3S3RF48_9ACAR1.040e-3834.88Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F00A0482.050e-3838.43DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A8D8CKX4_CULPI3.140e-3834.90Copia protein (Fragment) n=1 Tax=Culex pipiens Tax... [more]
A0A182GGE6_AEDAL6.970e-3834.27Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A6V7M0T8_9HYME9.620e-3834.05Uncharacterized protein n=1 Tax=Bracon brevicornis... [more]
A0A7D9DPP1_PARCT1.780e-3732.39Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81244contigM-pyrifera_M_contig81244:42..905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue7.3e-33
Seed eggNOG ortholog67593.Physo139015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size864
Cds size864
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.359281-CDS-M-pyrifera_M_contig81244:41..9051622816718.359281-CDS-M-pyrifera_M_contig81244:41..905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81244 42..905 -
1692278138.2647212-CDS-M-pyrifera_M_contig81244:41..9051692278138.2647212-CDS-M-pyrifera_M_contig81244:41..905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81244 42..905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81244.18999.1prot_M-pyrifera_M_contig81244.18999.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81244 42..905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81244.18999.1

>prot_M-pyrifera_M_contig81244.18999.1 ID=prot_M-pyrifera_M_contig81244.18999.1|Name=mRNA_M-pyrifera_M_contig81244.18999.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=288bp
VPHAISVANIHLWHRRWAHCDKTMLGRLPDAVVGMAIKGKDPSPLCPPCL
KGKMKAKPIPTTAQPRDYAPGSSVAVDLCGPFVESISGHKFFMIVRDLGS
RYLSGFFLKTKDQALVSFQGYAKLLRGKLSSVRLDNGELRSGAMSDFCRA
EGIRIEPTVPRTPQQNPVETDIRTIVADVRVMLNDAELPHPYWEYAVRTS
VWYRNRSLRGQLQRTPFELYFGSKPDVSRARVWGCLAYAHVSGDKAKLQD
RAIEVIFLGFADNSTGYLVQDPNVSNVVRVVRTLKCDE
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mRNA from alignment at M-pyrifera_M_contig81244:42..905-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81244.18999.1 ID=mRNA_M-pyrifera_M_contig81244.18999.1|Name=mRNA_M-pyrifera_M_contig81244.18999.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig81244:42..905- (Macrocystis pyrifera P11B4 male)
GTTCCCCACGCCATCAGCGTCGCCAACATTCACCTTTGGCATCGACGATG GGCTCACTGCGACAAGACGATGTTGGGACGGCTTCCAGACGCTGTGGTGG GTATGGCCATCAAGGGAAAGGACCCGTCTCCCCTCTGCCCCCCGTGCCTG AAGGGCAAGATGAAGGCGAAGCCCATCCCGACGACGGCCCAACCACGTGA CTATGCTCCTGGATCATCCGTGGCCGTGGACCTGTGTGGCCCCTTTGTGG AGAGCATCTCTGGGCACAAATTCTTCATGATTGTCAGAGACCTGGGCAGC CGCTACTTGAGCGGTTTCTTCCTCAAGACCAAGGACCAGGCTCTCGTTTC CTTCCAAGGATACGCGAAGCTCCTGCGTGGCAAGCTCTCTTCCGTTCGAC TGGACAACGGTGAACTGAGGAGCGGGGCGATGAGTGACTTCTGTCGTGCG GAGGGCATCCGGATTGAACCTACCGTGCCCCGCACCCCGCAGCAGAACCC CGTGGAGACCGACATCCGCACCATTGTGGCCGACGTACGCGTCATGTTGA ATGACGCCGAACTTCCTCATCCCTACTGGGAGTACGCTGTCCGCACTTCT GTTTGGTACAGAAACCGCTCACTCCGTGGCCAATTGCAGCGAACTCCCTT TGAGCTGTACTTTGGCAGCAAGCCTGACGTCAGCCGAGCCCGAGTTTGGG GCTGCCTGGCCTATGCTCATGTCAGCGGTGACAAGGCCAAACTGCAGGAT CGTGCCATTGAAGTGATCTTCCTCGGATTCGCCGACAACTCCACCGGATA CCTTGTGCAGGACCCCAACGTCTCCAACGTTGTGAGAGTAGTTCGTACCC TCAAGTGCGACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81244:42..905-

>mRNA_M-pyrifera_M_contig81244.18999.1 ID=mRNA_M-pyrifera_M_contig81244.18999.1|Name=mRNA_M-pyrifera_M_contig81244.18999.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1728bp|location=Sequence derived from alignment at M-pyrifera_M_contig81244:42..905- (Macrocystis pyrifera P11B4 male)
GTTCCCCACGCCATCAGCGTCGCCAACATTCACCTTTGGCATCGACGATG
GGCTCACTGCGACAAGACGATGTTGGGACGGCTTCCAGACGCTGTGGTGG
GTATGGCCATCAAGGGAAAGGACCCGTCTCCCCTCTGCCCCCCGTGCCTG
AAGGGCAAGATGAAGGCGAAGCCCATCCCGACGACGGCCCAACCACGTGA
CTATGCTCCTGGATCATCCGTGGCCGTGGACCTGTGTGGCCCCTTTGTGG
AGAGCATCTCTGGGCACAAATTCTTCATGATTGTCAGAGACCTGGGCAGC
CGCTACTTGAGCGGTTTCTTCCTCAAGACCAAGGACCAGGCTCTCGTTTC
CTTCCAAGGATACGCGAAGCTCCTGCGTGGCAAGCTCTCTTCCGTTCGAC
TGGACAACGGTGAACTGAGGAGCGGGGCGATGAGTGACTTCTGTCGTGCG
GAGGGCATCCGGATTGAACCTACCGTGCCCCGCACCCCGCAGCAGAACCC
CGTGGAGACCGACATCCGCACCATTGTGGCCGACGTACGCGTCATGTTGA
ATGACGCCGAACTTCCTCATCCCTACTGGGAGTACGCTGTCCGCACTTCT
GTTTGGTACAGAAACCGCTCACTCCGTGGCCAATTGCAGCGAACTCCCTT
TGAGCTGTACTTTGGCAGCAAGCCTGACGTCAGCCGAGCCCGAGTTTGGG
GCTGCCTGGCCTATGCTCATGTCAGCGGTGACAAGGCCAAACTGCAGGAT
CGTGCCATTGAAGTGATCTTCCTCGGATTCGCCGACAACTCCACCGGATA
CCTTGTGCAGGACCCCAACGTCTCCAACGTTGTGAGAGTAGTTCGTACCC
TCAAGTGCGACGAGGTTCCCCACGCCATCAGCGTCGCCAACATTCACCTT
TGGCATCGACGATGGGCTCACTGCGACAAGACGATGTTGGGACGGCTTCC
AGACGCTGTGGTGGGTATGGCCATCAAGGGAAAGGACCCGTCTCCCCTCT
GCCCCCCGTGCCTGAAGGGCAAGATGAAGGCGAAGCCCATCCCGACGACG
GCCCAACCACGTGACTATGCTCCTGGATCATCCGTGGCCGTGGACCTGTG
TGGCCCCTTTGTGGAGAGCATCTCTGGGCACAAATTCTTCATGATTGTCA
GAGACCTGGGCAGCCGCTACTTGAGCGGTTTCTTCCTCAAGACCAAGGAC
CAGGCTCTCGTTTCCTTCCAAGGATACGCGAAGCTCCTGCGTGGCAAGCT
CTCTTCCGTTCGACTGGACAACGGTGAACTGAGGAGCGGGGCGATGAGTG
ACTTCTGTCGTGCGGAGGGCATCCGGATTGAACCTACCGTGCCCCGCACC
CCGCAGCAGAACCCCGTGGAGACCGACATCCGCACCATTGTGGCCGACGT
ACGCGTCATGTTGAATGACGCCGAACTTCCTCATCCCTACTGGGAGTACG
CTGTCCGCACTTCTGTTTGGTACAGAAACCGCTCACTCCGTGGCCAATTG
CAGCGAACTCCCTTTGAGCTGTACTTTGGCAGCAAGCCTGACGTCAGCCG
AGCCCGAGTTTGGGGCTGCCTGGCCTATGCTCATGTCAGCGGTGACAAGG
CCAAACTGCAGGATCGTGCCATTGAAGTGATCTTCCTCGGATTCGCCGAC
AACTCCACCGGATACCTTGTGCAGGACCCCAACGTCTCCAACGTTGTGAG
AGTAGTTCGTACCCTCAAGTGCGACGAG
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