mRNA_M-pyrifera_M_contig81189.18989.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81189.18989.1
Unique NamemRNA_M-pyrifera_M_contig81189.18989.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Match: A0A0L0FLI3_9EUKA (Ribose-5-phosphate isomerase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FLI3_9EUKA)

HSP 1 Score: 115 bits (289), Expect = 1.080e-29
Identity = 59/106 (55.66%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGATVSLRPGKPAKAGPAVTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKPDGSTTR 318
            K S VLG  W+ GVP+EV+P A   V+N I+ +G T  LR  K AKAGP VTD G  I+D D+G IQDP   H SL+ IPGVVETG+F +MA VA FG+ DG+  R
Sbjct:  130 KDSTVLGHSWRLGVPIEVIPFAYTAVSNDIKRLGGTPVLRMAK-AKAGPLVTDNGMFIIDADWGDIQDPAALHQSLIVIPGVVETGLFCDMAKVAFFGQADGTVVR 234          
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Match: A0A7S2RQ44_9STRA (Ribose-5-phosphate isomerase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RQ44_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.640e-28
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 1
Query:    1 KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGATVSLRPGKPAKAGPAVTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKPDGSTT 315
            K SQ+LG +WKKGVP+EV+P A V +TN I+ +G   +LR  K AKAGP VTD GN++LD +FG I+D Q   + L  IPG+V TG+F  MA  A FG  DG+ T
Sbjct:  192 KDSQLLGQQWKKGVPIEVVPMAYVPITNKIKDLGGVATLRMAK-AKAGPCVTDNGNLVLDAEFGEIKDVQALENKLNDIPGIVTTGLFVGMACKAFFGTKDGNVT 295          
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Match: L8HC48_ACACA (Ribose-5-phosphate isomerase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HC48_ACACA)

HSP 1 Score: 112 bits (281), Expect = 2.680e-28
Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 1
Query:    1 KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGATVSLRPGKPAKAGPAVTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKPDGSTTRWEKDKGKE 342
            KQS++LG +W+KGVPVEV+P +   +    +++G    LR G+PAKAGP VTD GN ++D DFG I DP+  H  +  + GVVETG+F NMA  A FG  DG+ +   K   KE
Sbjct:  145 KQSKLLGEKWRKGVPVEVIPISYKPLMRKFETLGGRPVLRMGEPAKAGPCVTDNGNFLIDVDFGTIADPEGLHKEIKLLAGVVETGLFINMAEKAYFGLEDGTVSAITKPLAKE 258          
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Match: A0A8J5UWD8_9ASCO (RKI1 n=1 Tax=[Candida] subhashii TaxID=561895 RepID=A0A8J5UWD8_9ASCO)

HSP 1 Score: 112 bits (279), Expect = 3.170e-28
Identity = 51/110 (46.36%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGAT-VSLRPGKPAKAGPAVTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKPDGSTTRWEK 327
            K+S++LG  W +GVP+E++P +   VTN ++ +GA  + LR G  AKAGP +TD  N ++D DFG IQD ++ H+ +  + GVVETG+F NMA  A FG+  G  T W K
Sbjct:  126 KESKILGREWTQGVPIEIVPNSYAKVTNDLKKLGAKKIDLRQGGKAKAGPVITDNNNFLIDADFGDIQDAKKLHEQIKLLVGVVETGLFINMADKAYFGEESGEVTVWTK 235          
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Match: A0A642UJ05_DIURU (Ribose-5-phosphate isomerase n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UJ05_DIURU)

HSP 1 Score: 111 bits (278), Expect = 4.170e-28
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGAT-VSLRPGKPAKAGPAVTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKPDGSTTRW 321
            K+S+ +G+ WK+GVP+EV+P+A V VT  +  +GA  V+LR G P KAGP VTD  N ILD DFG I +P + H+ +  + GVV+TG+F NMA    FG+ DG  + W
Sbjct:  125 KKSETVGTEWKQGVPIEVVPSAYVSVTKKLYELGAKKVTLRDGMPKKAGPVVTDNNNSILDADFGPIANPAQLHEKIKLLVGVVDTGLFCNMAKKVYFGEEDGQVSVW 232          
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Match: A0A0D2VTJ8_CAPO3 (Ribose-5-phosphate isomerase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VTJ8_CAPO3)

HSP 1 Score: 112 bits (281), Expect = 8.150e-28
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGATVSLRPGKPAKAGPAVTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKPDGS 309
            K+S+ LG +WK GVP+EV+P A V V   ++S G    LR  K AKAGP VTD GN ++DCDFG IQDP      + +IPGVVETG+F NMA  A FG  DG+
Sbjct:  205 KKSETLGQQWKAGVPIEVIPLAYVPVLRKLESFGGKPVLRMAK-AKAGPVVTDNGNFVVDCDFGLIQDPAALDKRIASIPGVVETGLFVNMAEKAFFGMQDGT 306          
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Match: A0A7S1GFH4_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GFH4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 8.880e-28
Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    1 KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGATVSLRPGKPAKAGPAVTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKPDGSTTRWEK 327
            KQS+ LG+ WK GVPVEV+P A  +V   +++MG   +LR     KAGP VTD GN+ILD DFG I DP+     +  IPGV E G+F  MA+ A FG  DGS   WE+
Sbjct:  143 KQSEALGTAWKGGVPVEVMPMAWAVVKARLEAMGGKPTLRMAVK-KAGPVVTDTGNLILDADFGRIDDPKALERDITLIPGVTECGLFVQMASKAYFGMADGSVVEWER 250          
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Match: G3ARG1_SPAPN (Ribose-5-phosphate isomerase n=2 Tax=Spathaspora TaxID=412764 RepID=G3ARG1_SPAPN)

HSP 1 Score: 110 bits (275), Expect = 1.230e-27
Identity = 50/110 (45.45%), Postives = 75/110 (68.18%), Query Frame = 1
Query:    1 KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGAT-VSLRPGKPAKAGPAVTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKPDGSTTRWEK 327
            K+S+VLG +W +G+P+E++P A   V N ++ +GA  V LR G  AKAGP +TD  N +LD DFG ++D ++ HD + A+ GVVETG+F ++A  A FG+ +G  + W K
Sbjct:  125 KKSEVLGRQWTQGIPIEIVPNAYAKVINDLKKLGAKKVDLRSGGKAKAGPVITDNHNFLLDADFGDVKDAKKLHDEIKALVGVVETGLFTDLAQKAYFGEENGEVSTWTK 234          
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Match: M3JUV2_CANMX (Ribose-5-phosphate isomerase n=1 Tax=Candida maltosa (strain Xu316) TaxID=1245528 RepID=M3JUV2_CANMX)

HSP 1 Score: 110 bits (275), Expect = 1.260e-27
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGAT-VSLRPGKPAKAGPAVTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKPDGSTTRWE 324
            K+S+ LG  W++GVP+E++P +   VT A+ ++GA  V LR G  AKAGP +TD  N +LD DFG I+DP++ H  +  + GVV+TG+F  MA+ A FG+  G  T W+
Sbjct:  126 KESKKLGESWRQGVPIEIVPNSYAKVTQALYALGAKKVDLRQGGKAKAGPVITDNNNFLLDADFGEIEDPEKLHVQIKLLVGVVDTGLFTQMASKAYFGEESGEVTLWK 234          
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Match: C5M9K4_CANTT (Ribose-5-phosphate isomerase n=3 Tax=Candida TaxID=1535326 RepID=C5M9K4_CANTT)

HSP 1 Score: 110 bits (274), Expect = 2.600e-27
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGAT-VSLRPGKPAKAGPAVTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKPDGSTTRW 321
            K+S+ LG  W++GVP+E++P +   VT  +  MGA  V LR G  AKAGP +TD  N +LD DFG I+DP+  H  +  + GVVETG+F +MA  + FG+ DGS   W
Sbjct:  143 KESKKLGESWRQGVPIEIVPNSYAKVTKQLYDMGAKKVDLRQGGKAKAGPVITDNNNFLLDADFGEIEDPEELHKQIKLLVGVVETGLFTDMADKSYFGEEDGSVVVW 250          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81189.18989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0FLI3_9EUKA1.080e-2955.66Ribose-5-phosphate isomerase n=1 Tax=Sphaeroforma ... [more]
A0A7S2RQ44_9STRA1.640e-2853.33Ribose-5-phosphate isomerase n=1 Tax=labyrinthulid... [more]
L8HC48_ACACA2.680e-2848.25Ribose-5-phosphate isomerase n=1 Tax=Acanthamoeba ... [more]
A0A8J5UWD8_9ASCO3.170e-2846.36RKI1 n=1 Tax=[Candida] subhashii TaxID=561895 RepI... [more]
A0A642UJ05_DIURU4.170e-2849.07Ribose-5-phosphate isomerase n=1 Tax=Diutina rugos... [more]
A0A0D2VTJ8_CAPO38.150e-2854.37Ribose-5-phosphate isomerase n=1 Tax=Capsaspora ow... [more]
A0A7S1GFH4_9STRA8.880e-2850.46Ribose-5-phosphate isomerase n=1 Tax=Bicosoecida s... [more]
G3ARG1_SPAPN1.230e-2745.45Ribose-5-phosphate isomerase n=2 Tax=Spathaspora T... [more]
M3JUV2_CANMX1.260e-2745.87Ribose-5-phosphate isomerase n=1 Tax=Candida malto... [more]
C5M9K4_CANTT2.600e-2747.22Ribose-5-phosphate isomerase n=3 Tax=Candida TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81189contigM-pyrifera_M_contig81189:574..933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score116.7
Seed ortholog evalue7.5e-24
Seed eggNOG ortholog72019.SARC_09909T0
Preferred nameRKI1
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009052,GO:0009058,GO:0009110,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019321,GO:0019362,GO:0019438,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.ribose-5-phosphate isomerase activity
EggNOG OGs38HSY@33154,COG0120@1,KOG3075@2759
EC5.3.1.6
COG Functional cat.G
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816717.6987264-CDS-M-pyrifera_M_contig81189:573..9331622816717.6987264-CDS-M-pyrifera_M_contig81189:573..933Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81189 574..933 -
1692278137.839985-CDS-M-pyrifera_M_contig81189:573..9331692278137.839985-CDS-M-pyrifera_M_contig81189:573..933Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81189 574..933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81189.18989.1prot_M-pyrifera_M_contig81189.18989.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81189 574..933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81189.18989.1

>prot_M-pyrifera_M_contig81189.18989.1 ID=prot_M-pyrifera_M_contig81189.18989.1|Name=mRNA_M-pyrifera_M_contig81189.18989.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
KQSQVLGSRWKKGVPVEVLPTARVLVTNAIQSMGATVSLRPGKPAKAGPA
VTDLGNVILDCDFGHIQDPQRTHDSLVAIPGVVETGIFPNMATVAIFGKP
DGSTTRWEKDKGKERRKGQ*
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mRNA from alignment at M-pyrifera_M_contig81189:574..933-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81189.18989.1 ID=mRNA_M-pyrifera_M_contig81189.18989.1|Name=mRNA_M-pyrifera_M_contig81189.18989.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig81189:574..933- (Macrocystis pyrifera P11B4 male)
AAGCAGAGCCAAGTGCTCGGGTCACGGTGGAAGAAAGGAGTTCCGGTGGA AGTGCTCCCAACCGCCAGAGTGTTGGTCACCAACGCCATCCAATCCATGG GAGCTACCGTCAGTCTCCGCCCAGGAAAGCCAGCCAAGGCAGGGCCGGCA GTCACAGATCTCGGAAACGTCATCCTAGACTGCGATTTCGGACACATCCA AGACCCGCAACGCACCCACGACAGCCTCGTCGCCATCCCCGGAGTCGTGG AGACCGGCATCTTCCCAAACATGGCGACCGTGGCCATCTTCGGCAAACCG GACGGGTCCACAACGAGGTGGGAAAAGGACAAGGGGAAGGAGAGGAGAAA GGGGCAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81189:574..933-

>mRNA_M-pyrifera_M_contig81189.18989.1 ID=mRNA_M-pyrifera_M_contig81189.18989.1|Name=mRNA_M-pyrifera_M_contig81189.18989.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig81189:574..933- (Macrocystis pyrifera P11B4 male)
AAGCAGAGCCAAGTGCTCGGGTCACGGTGGAAGAAAGGAGTTCCGGTGGA
AGTGCTCCCAACCGCCAGAGTGTTGGTCACCAACGCCATCCAATCCATGG
GAGCTACCGTCAGTCTCCGCCCAGGAAAGCCAGCCAAGGCAGGGCCGGCA
GTCACAGATCTCGGAAACGTCATCCTAGACTGCGATTTCGGACACATCCA
AGACCCGCAACGCACCCACGACAGCCTCGTCGCCATCCCCGGAGTCGTGG
AGACCGGCATCTTCCCAAACATGGCGACCGTGGCCATCTTCGGCAAACCG
GACGGGTCCACAACGAGGTGGGAAAAGGACAAGGGGAAGGAGAGGAGAAA
GGGGCAGTGAAAGCAGAGCCAAGTGCTCGGGTCACGGTGGAAGAAAGGAG
TTCCGGTGGAAGTGCTCCCAACCGCCAGAGTGTTGGTCACCAACGCCATC
CAATCCATGGGAGCTACCGTCAGTCTCCGCCCAGGAAAGCCAGCCAAGGC
AGGGCCGGCAGTCACAGATCTCGGAAACGTCATCCTAGACTGCGATTTCG
GACACATCCAAGACCCGCAACGCACCCACGACAGCCTCGTCGCCATCCCC
GGAGTCGTGGAGACCGGCATCTTCCCAAACATGGCGACCGTGGCCATCTT
CGGCAAACCGGACGGGTCCACAACGAGGTGGGAAAAGGACAAGGGGAAGG
AGAGGAGAAAGGGGCAGTGA
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