mRNA_M-pyrifera_M_contig8115.18981.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8115.18981.1
Unique NamemRNA_M-pyrifera_M_contig8115.18981.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Match: A0A835YZE5_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.900e-22
Identity = 42/67 (62.69%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVETYDSWDRVFLLFATSYILGAVLFLAWAGDEEIE 201
            DI+P  AGL+FGAGNTA T+AGLV VPL GWLV+T+ +WD V  +F+ SY++GAV ++AW G EEIE
Sbjct:  426 DIAPSRAGLIFGAGNTAGTLAGLVAVPLSGWLVDTFHNWDLVLYMFSLSYVIGAVAWVAWVGGEEIE 492          
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Match: A0A835WWZ7_9CHLO (MFS domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A835WWZ7_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 7.430e-20
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVETYDSWDRVFLLFATSYILGAVLFLAWAGDEEIE*TDGLKFA 225
            DI+PRNAGLVFGAGNTAAT+AGLV+VP+ G+L++T  SW  VF + A  Y+ GAVL+ AWAGD ++   DG   A
Sbjct:  409 DIAPRNAGLVFGAGNTAATLAGLVSVPVTGYLLQTTGSWPLVFGITAFHYVAGAVLWAAWAGDRQLP-EDGAPVA 482          
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Match: A0A2K3CVG1_CHLRE (MFS domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3CVG1_CHLRE)

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-19
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVETYDSWDRVFLLFATSYILGAVLFLAWAGDEEIE*TDGLKFA 225
            DI+PRNAGLVFGAGNTAAT+AGLV+VP+ G+L++T  SW  VF + A  Y+ GA+L+ AWAGD+++   DG   A
Sbjct:  497 DIAPRNAGLVFGAGNTAATLAGLVSVPVTGYLLQTTGSWPLVFGITAFHYVAGALLWAAWAGDKQLP-EDGAPVA 570          
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Match: A0A6S8HC07_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A6S8HC07_DUNTE)

HSP 1 Score: 87.4 bits (215), Expect = 9.510e-18
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVETYDSWDRVFLLFATSYILGAVLFLAWAGDEEI 198
            D++PR+AGLVFGAGNTAAT+AG+V+VP  G+L++T +SW  VF + A  Y+LGA L+ AW GD  +
Sbjct:  707 DVAPRHAGLVFGAGNTAATLAGVVSVPFTGYLLQTTESWPLVFGVTAAHYVLGAALWAAWCGDTAV 772          
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Match: A0A4D9D2Q0_9STRA (MFS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2Q0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.110e-17
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVETYDSWDRVFLLFATSYILGAVLFLAWAGDEEI 198
            DI PRNAGLVF AGNT AT+ GLV+VP+ G ++E   S+D VF LFA  Y++GA L+ AW GD++I
Sbjct:  405 DICPRNAGLVFAAGNTLATVGGLVSVPIAGLVLEKCGSFDAVFALFAAHYVVGAALYAAWIGDKDI 470          
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Match: A0A8J4B4K4_9CHLO (MFS domain-containing protein n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B4K4_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 1.710e-17
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVETYDSWDRVFLLFATSYILGAVLFLAWAGDEEIE*TDGLKFARPE 234
            D++PRNAGLVFGAGNTAAT+AGLV+VP+ G+L++T  SW  VF + A  Y+ GA+++  W+GD  +    G +  RPE
Sbjct:  494 DVAPRNAGLVFGAGNTAATLAGLVSVPVTGYLLQTTGSWPLVFGITAFHYVAGALIWSLWSGDRALPEDGGSQ--RPE 569          
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Match: A0A0G4IAD4_9ALVE (MFS domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IAD4_9ALVE)

HSP 1 Score: 86.3 bits (212), Expect = 2.370e-17
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVE-TYDSWDRVFLLFATSYILGAVLFLAWAGDEEIE 201
            D++PRNAGLVFGAGNTAAT AGL+ +P+ GWL+E T ++W  VF LFA  Y LGAVLF    GD  +E
Sbjct:  550 DVAPRNAGLVFGAGNTAATGAGLLALPVSGWLLEQTNNNWAAVFALFAGHYALGAVLFFFLVGDSPVE 617          
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Match: D8TSZ4_VOLCA (MFS domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TSZ4_VOLCA)

HSP 1 Score: 85.1 bits (209), Expect = 5.470e-17
Identity = 37/66 (56.06%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVETYDSWDRVFLLFATSYILGAVLFLAWAGDEEI 198
            D++PRNAGLVFGAGNTAAT+AGLV+VP+ G++++T  SW  VF + A  Y+ GAV +  W+GD+ +
Sbjct:  398 DVAPRNAGLVFGAGNTAATLAGLVSVPVTGYVLQTTGSWPLVFGITALHYVAGAVAWTIWSGDKPL 463          
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Match: A0A8J4CQ81_9CHLO (MFS domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CQ81_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 5.930e-17
Identity = 37/66 (56.06%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVETYDSWDRVFLLFATSYILGAVLFLAWAGDEEI 198
            D++PRNAGLVFGAGNTAAT+AGLV+VP+ G+L++T  SW  VF + A  Y+ GA+++  W+GD  +
Sbjct:  496 DVAPRNAGLVFGAGNTAATLAGLVSVPVTGYLLQTTGSWPLVFGITAFHYVAGALIWSLWSGDRAL 561          
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Match: A0A150H2B5_GONPE (MFS domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H2B5_GONPE)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-16
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVETYDSWDRVFLLFATSYILGAVLFLAWAGDEEI 198
            D++PRNAGLVFGAGNTAAT+AGL++VP  G+L++T  SW  VF + A  Y+ GAV++  W GD  +
Sbjct:  406 DVAPRNAGLVFGAGNTAATLAGLLSVPFTGYLLQTTGSWPLVFGITAFHYVAGAVVWALWCGDRPL 471          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8115.18981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZE5_9STRA6.900e-2262.69Major facilitator superfamily domain-containing pr... [more]
A0A835WWZ7_9CHLO7.430e-2060.00MFS domain-containing protein n=2 Tax=Chlamydomona... [more]
A0A2K3CVG1_CHLRE1.600e-1958.67MFS domain-containing protein n=2 Tax=Chlamydomona... [more]
A0A6S8HC07_DUNTE9.510e-1857.58Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A4D9D2Q0_9STRA1.110e-1759.09MFS domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A8J4B4K4_9CHLO1.710e-1752.56MFS domain-containing protein n=3 Tax=Volvox afric... [more]
A0A0G4IAD4_9ALVE2.370e-1761.76MFS domain-containing protein n=1 Tax=Chromera vel... [more]
D8TSZ4_VOLCA5.470e-1756.06MFS domain-containing protein n=1 Tax=Volvox carte... [more]
A0A8J4CQ81_9CHLO5.930e-1756.06MFS domain-containing protein n=1 Tax=Volvox retic... [more]
A0A150H2B5_GONPE1.020e-1656.06MFS domain-containing protein n=1 Tax=Gonium pecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8115contigM-pyrifera_M_contig8115:9916..10862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.3
Seed ortholog evalue6.1e-15
Seed eggNOG ortholog3067.XP_002949545.1
KEGG koko:K08193
KEGG TC2.A.1.14
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Major Facilitator Superfamily
EggNOG OGs34GP1@3041,37TI6@33090,KOG2532@1,KOG2532@2759
COG Functional cat.G
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size344
Cds size204
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8115.18981.1prot_M-pyrifera_M_contig8115.18981.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8115 9916..10723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816717.2298496-CDS-M-pyrifera_M_contig8115:9915..99891622816717.2298496-CDS-M-pyrifera_M_contig8115:9915..9989Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8115 9916..9989 +
1692278137.483554-CDS-M-pyrifera_M_contig8115:9915..99891692278137.483554-CDS-M-pyrifera_M_contig8115:9915..9989Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8115 9916..9989 +
1622816717.243782-CDS-M-pyrifera_M_contig8115:10593..107231622816717.243782-CDS-M-pyrifera_M_contig8115:10593..10723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8115 10594..10723 +
1692278137.5026646-CDS-M-pyrifera_M_contig8115:10593..107231692278137.5026646-CDS-M-pyrifera_M_contig8115:10593..10723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8115 10594..10723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816717.2566571-UTR-M-pyrifera_M_contig8115:10723..108621622816717.2566571-UTR-M-pyrifera_M_contig8115:10723..10862Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8115 10724..10862 +
1692278137.5151098-UTR-M-pyrifera_M_contig8115:10723..108621692278137.5151098-UTR-M-pyrifera_M_contig8115:10723..10862Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8115 10724..10862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8115.18981.1

>prot_M-pyrifera_M_contig8115.18981.1 ID=prot_M-pyrifera_M_contig8115.18981.1|Name=mRNA_M-pyrifera_M_contig8115.18981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
DISPRNAGLVFGAGNTAATIAGLVTVPLCGWLVETYDSWDRVFLLFATSY
ILGAVLFLAWAGDEEIE*
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mRNA from alignment at M-pyrifera_M_contig8115:9916..10862+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8115.18981.1 ID=mRNA_M-pyrifera_M_contig8115.18981.1|Name=mRNA_M-pyrifera_M_contig8115.18981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=947bp|location=Sequence derived from alignment at M-pyrifera_M_contig8115:9916..10862+ (Macrocystis pyrifera P11B4 male)
GACATTTCTCCCCGAAATGCCGGACTCGTGTTCGGCGCCGGGAACACCGC TGCTACCATCGCCGGACTGGTGACGTGAGTGCGCTGTGTCCTCATGATGT GCATCTCTGTGTGCGTTTCTCAGCGCTGCCTCCACACATTGTTCCACTGC CCCTTTTGGTACCGTGTGGGCATTCAGCTTGTGGCGATCACGTCCTCCCC ACACGACGCAGAGAGGAAGCAAAAACCCAACGCTTGCCCGCACAAGAGCT CCGGCAGCTATGCTTCTAGCATGAGCAACGGGACTGCGAGTTGGCTGATT GAAATTTACCTACTAGTTATTATTTCGCTGTACACTTAGTAATAGTTGCG TACGGTAATTAGGGGACTTCTGCGTCTTTGCATCTAACTGGTGCGTTTGT GACTTCACGTGTTGTGTTTGCTTTTACTGTACACTGGTATGTCAATTAGT TGGCTTAAAACGCCACCCGACTACAGTACAGTAGTAATTGACAGTGTTTC CAGCCAACGCGTGCCTTTTTCACAGCCGTAGTAAATCTTTAGGAACAGCG GTTTTAGTCGTTTTCACCCGATTGCATCGCCCTCTGCTATCAAACTCCGC CAGCATCTACCTACTGAACAGTATGTACCGATTGCGTTCGACCTGGTGCT GCCCCCACTGAATGACGATATATACCAGGGTGCCCCTGTGCGGATGGCTG GTGGAGACGTACGACTCATGGGATCGGGTGTTCCTACTCTTTGCGACCAG CTACATTCTCGGAGCGGTCCTGTTTCTCGCATGGGCGGGGGACGAGGAGA TTGAGTAGACTGACGGGTTGAAATTCGCTCGACCCGAGTAGTAAAAATGA GTACGATGAGCGAAGCAAAACAGCGACAACTTCATTACAGTTCCACTATA AAAAGTATGCCGTGGGTTCACGTCACTTTTCGATGTCATCAGCGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8115:9916..10862+

>mRNA_M-pyrifera_M_contig8115.18981.1 ID=mRNA_M-pyrifera_M_contig8115.18981.1|Name=mRNA_M-pyrifera_M_contig8115.18981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig8115:9916..10862+ (Macrocystis pyrifera P11B4 male)
GACATTTCTCCCCGAAATGCCGGACTCGTGTTCGGCGCCGGGAACACCGC
TGCTACCATCGCCGGACTGGTGACGACATTTCTCCCCGAAATGCCGGACT
CGTGTTCGGCGCCGGGAACACCGCTGCTACCATCGCCGGACTGGTGACGG
TGCCCCTGTGCGGATGGCTGGTGGAGACGTACGACTCATGGGATCGGGTG
TTCCTACTCTTTGCGACCAGCTACATTCTCGGAGCGGTCCTGTTTCTCGC
ATGGGCGGGGGACGAGGAGATTGAGTAGGGTGCCCCTGTGCGGATGGCTG
GTGGAGACGTACGACTCATGGGATCGGGTGTTCCTACTCTTTGCGACCAG
CTACATTCTCGGAGCGGTCCTGTTTCTCGCATGGGCGGGGGACGAGGAGA
TTGAGTAG
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