mRNA_M-pyrifera_M_contig81137.18979.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81137.18979.1
Unique NamemRNA_M-pyrifera_M_contig81137.18979.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Match: A0A485LCJ1_9STRA (Aste57867_19367 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCJ1_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.730e-35
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    1 GMELELIPHTGIVIGDVEYFFGGGIQAAHPSEVVAHFGPPVKVITLGRSTKSMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISKLPERLMATPIGTMVAPMLDAAQRQLVGSLH 393
            G ++E + HTG+ +   EYFFGGGIQA HPS VV  +G PV+ +TLG +     EF  FLRE S R+   +Y+L+ HNCN+FS+E AQFLLG GIP+ I  LP  +++TP+G M  PM++  Q  +  S+H
Sbjct:   26 GRQIEGVWHTGVFVYGQEYFFGGGIQAIHPSYVVGTYGQPVQTLTLGSTEVPAEEFAAFLREVSPRFTAATYNLLSHNCNNFSNEVAQFLLGTGIPQHILDLPNEVLSTPMGAMFRPMIENMQASMARSVH 156          
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Match: A0A5A8CXH2_CAFRO (PPPDE domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CXH2_CAFRO)

HSP 1 Score: 136 bits (343), Expect = 5.510e-35
Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 1
Query:    1 GMELELIPHTGIVIGDVEYFFGGGIQAAHPSEVVAHFG-PPVKVITLGRSTKSMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISKLPERLMATPIGTMVAPMLDAAQRQLVGSLHT-LDPYAA 414
            G +++ IPHTGIV+   EYFFGGGIQ   P  V AHFG  P K I LG++      F  F+    SRY P +Y+L++HNCNHF+DE A FLLG GIP +I  LPE  ++TP+G  +APM+    +Q+   + T +DP+AA
Sbjct:   29 GKQIDYIPHTGIVVFGYEYFFGGGIQKLRPELVPAHFGLAPCKAIPLGKTPMDQETFDAFVAGIQSRYTPATYNLLKHNCNHFTDECANFLLGSGIPSEIRDLPEVFLSTPLGQSLAPMI----QQMTDQMSTNMDPFAA 164          
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Match: A0A5A8E079_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E079_CAFRO)

HSP 1 Score: 136 bits (343), Expect = 2.220e-34
Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 1
Query:    1 GMELELIPHTGIVIGDVEYFFGGGIQAAHPSEVVAHFG-PPVKVITLGRSTKSMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISKLPERLMATPIGTMVAPMLDAAQRQLVGSLHT-LDPYAA 414
            G +++ IPHTGIV+   EYFFGGGIQ   P  V AHFG  P K I LG++      F  F+    SRY P +Y+L++HNCNHF+DE A FLLG GIP +I  LPE  ++TP+G  +APM+    +Q+   + T +DP+AA
Sbjct:  402 GKQIDYIPHTGIVVFGYEYFFGGGIQKLRPELVPAHFGLAPCKAIPLGKTPMDQETFDAFVAGIQSRYTPATYNLLKHNCNHFTDECANFLLGSGIPSEIRDLPEVFLSTPLGQSLAPMI----QQMTDQMSTNMDPFAA 537          
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Match: A0A6G0WBN9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBN9_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.460e-34
Identity = 62/132 (46.97%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 GMELELIPHTGIVIGDVEYFFGGGIQAAHPSEVVAHFGPPVKVITLGRSTKSMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISKLPERLMATPIGTMVAPMLDAAQRQLVGSLHT 396
            G ++E + HTG+ +   EYFFGGGIQA HPS VV+ +G PV+V+ LG +     EF  FL+E S R+   +Y+L+ HNCN+FS+E AQFLLG GIP+ I  LP  +++TP+G M  PM++  Q ++  S+ +
Sbjct:   26 GRQIEGVWHTGVFVYGKEYFFGGGIQAIHPSFVVSTYGQPVQVVQLGETEVPPEEFASFLQEISPRFTAATYNLLSHNCNNFSNEVAQFLLGSGIPQHILDLPNEVLSTPMGAMFRPMIENMQAEMARSVQS 157          
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Match: A0A7S1C409_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C409_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.170e-33
Identity = 62/136 (45.59%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 GMELELIPHTGIVIGDVEYFFGGGIQAAHPSEVVAHFGP-PVKVITLGRSTKSMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISKLPERLMATPIGTMVAPMLDAAQRQLVGSLHTLDP 405
            G +++ I HTGI +  VEYF+GGGIQ  HP+ + A FG  PV+V+ LG +    S F+EF+R  S R+ P +YDL  +NCN+F+D AA+FL G GIP  I  LP   + TP+G M+APM+ + Q  +   +   DP
Sbjct:   32 GKQIDGIWHTGIYVYGVEYFYGGGIQREHPATIAATFGMRPVQVVDLGETEVPESSFREFIRGVSHRFTPATYDLFTNNCNNFTDAAAKFLTGSGIPRHIIDLPNEFLQTPLGQMLAPMITSMQNSMYERMGAGDP 167          
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Match: A0A5D6XW69_9STRA (PPPDE domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW69_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.630e-33
Identity = 61/127 (48.03%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 GMELELIPHTGIVIGDVEYFFGGGIQAAHPSEVVAHFG-PPVKVITLGRSTKSMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISKLPERLMATPIGTMVAPMLDAAQRQL 378
            G +++ I HTG+++   EYF+GGGIQ   P  VV  +G PPV+V+ LG ++  +  F+ FLRE S R+   +YDL+R+NCN+FS+E A FLLG GIP+ I  LP+ +++TP G M+ PMLD  QR++
Sbjct:   32 GKQIDGIWHTGVLVYGQEYFYGGGIQKMAPELVVERYGMPPVQVVPLGATSVPVERFEAFLREISPRFTAANYDLLRNNCNNFSNELAGFLLGSGIPQHILALPDEVLSTPFGAMLRPMLDNMQREM 158          
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Match: A0A1V9Z3P4_9STRA (PPPDE peptidase domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z3P4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.050e-32
Identity = 57/126 (45.24%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 GMELELIPHTGIVIGDVEYFFGGGIQAAHPSEVVAHFGPPVKVITLGRSTKSMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISKLPERLMATPIGTMVAPMLDAAQRQL 378
            GM +E + HTG+V+  +E+FFGGGIQA  P++V   +G P +VI +G +    SEF  FL+E   R+   +Y+L+ +NCN+FS+E A FLLG  IP+ I +LPER+++TP+G M  PM++  Q ++
Sbjct:   27 GMHIEGVWHTGVVVYGLEFFFGGGIQAVPPAQVAETYGNPYQVIEMGNTQVPQSEFIAFLQEIQPRFTAATYNLLSNNCNNFSNEVANFLLGENIPQHILELPERVLSTPMGAMFRPMVEELQGRM 152          
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Match: A0A024UH06_9STRA (PPPDE domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UH06_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.400e-31
Identity = 68/161 (42.24%), Postives = 102/161 (63.35%), Query Frame = 1
Query:    1 GMELELIPHTGIVIGDVEYFFGGGIQAAHPSEVVAHFGPPVKVITLGRSTKSMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISKLPERLMATPIGTMVAPMLDAAQRQLVGSLHTL---DPYAASTAA------SAASAPSSSP 456
            G +++ + HTGI++ + EYFFGGGIQA HPS VV  +G PV+V+ LG +     EF  FL E S R+   +Y+L+ +NCN+FS+E A FL+G GIP+ I  LP  +++TP+G M  PM++  Q  +  ++ +    +P+ AST+       +AAS P  SP
Sbjct:   25 GRQIDGVWHTGIMVYEKEYFFGGGIQAIHPSYVVETYGQPVQVLRLGSTQVPPEEFNAFLHEVSPRFTAATYNLLTNNCNNFSNEVALFLVGSGIPQHILDLPNEVLSTPMGAMFRPMIEQMQANMAVNVQSHGGGNPFLASTSLPPPPSRAAASVPGPSP 185          
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Match: A0A061SAR9_9CHLO (Desumoylating isopeptidase 1-like isoform x1 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAR9_9CHLO)

HSP 1 Score: 122 bits (305), Expect = 1.590e-31
Identity = 60/126 (47.62%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 GMELELIPHTGIVIGDVEYFFGGGIQAAHPSEVVAHFGPPVKVITLGRSTKSMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISKLPERLMATPIGTMVAPMLDAAQRQL 378
            G +++ I HTG+VIGD EYF+GGGIQ       V  FG PV+V++LG +        EFL E S+R+ P  Y ++ +NCN+FSDE A FL G GIPE I+ LP   ++TP+G MV P+L++ + QL
Sbjct:   30 GKQVDGIWHTGVVIGDKEYFYGGGIQVEQAGRTV--FGQPVEVMSLGETCVPDEVLMEFLSEISTRFGPEHYSILHNNCNNFSDELASFLTGRGIPEHITGLPSEFISTPLGQMVLPLLNSLETQL 153          
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Match: A0A329SGU9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SGU9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.550e-31
Identity = 61/128 (47.66%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 GMELELIPHTGIVIGDVEYFFGGG-IQAAHPSEVVAHFG-PPVKVITLGRSTKSMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISKLPERLMATPIGTMVAPMLDAAQRQL 378
            G  ++ + HTG+++   EYFFGGG IQA  P  VV  +G  PV+ ITLG +T++  + ++FLRE S+R+   +YDL+RHNCN+FSDE A+FL+G GIP+ I  LP   + +P G M+ PMLD    Q+
Sbjct:   25 GKTIDGVWHTGVLVFGKEYFFGGGGIQAMAPELVVQRYGMQPVRTITLGETTQTQQQLEQFLRENSARFTDATYDLLRHNCNNFSDEVAKFLVGSGIPQYILDLPNEALNSPFGAMLRPMLDNMNNQM 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81137.18979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A485LCJ1_9STRA1.730e-3548.85Aste57867_19367 protein n=1 Tax=Aphanomyces stella... [more]
A0A5A8CXH2_CAFRO5.510e-3548.57PPPDE domain-containing protein n=2 Tax=Cafeteria ... [more]
A0A5A8E079_CAFRO2.220e-3448.57Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A6G0WBN9_9STRA3.460e-3446.97Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1C409_9STRA1.170e-3345.59Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5D6XW69_9STRA4.630e-3348.03PPPDE domain-containing protein n=1 Tax=Pythium br... [more]
A0A1V9Z3P4_9STRA1.050e-3245.24PPPDE peptidase domain-containing protein (Fragmen... [more]
A0A024UH06_9STRA1.400e-3142.24PPPDE domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A061SAR9_9CHLO1.590e-3147.62Desumoylating isopeptidase 1-like isoform x1 n=2 T... [more]
A0A329SGU9_9STRA7.550e-3147.66Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81137contigM-pyrifera_M_contig81137:11..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue4.2e-32
Seed eggNOG ortholog42099.EPrPV00000020865
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidase. Source PGD
EggNOG OGs1MFU6@121069,KOG0324@1,KOG0324@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816717.1486034-UTR-M-pyrifera_M_contig81137:10..131622816717.1486034-UTR-M-pyrifera_M_contig81137:10..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81137 11..13 +
1692278137.4349673-UTR-M-pyrifera_M_contig81137:10..131692278137.4349673-UTR-M-pyrifera_M_contig81137:10..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81137 11..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816717.1605096-CDS-M-pyrifera_M_contig81137:13..4661622816717.1605096-CDS-M-pyrifera_M_contig81137:13..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81137 14..466 +
1692278137.4560902-CDS-M-pyrifera_M_contig81137:13..4661692278137.4560902-CDS-M-pyrifera_M_contig81137:13..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81137 14..466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81137.18979.1prot_M-pyrifera_M_contig81137.18979.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81137 14..466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81137.18979.1

>prot_M-pyrifera_M_contig81137.18979.1 ID=prot_M-pyrifera_M_contig81137.18979.1|Name=mRNA_M-pyrifera_M_contig81137.18979.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MELELIPHTGIVIGDVEYFFGGGIQAAHPSEVVAHFGPPVKVITLGRSTK
SMSEFQEFLREASSRYLPTSYDLIRHNCNHFSDEAAQFLLGHGIPEDISK
LPERLMATPIGTMVAPMLDAAQRQLVGSLHTLDPYAASTAASAASAPSSS
P
back to top

mRNA from alignment at M-pyrifera_M_contig81137:11..466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81137.18979.1 ID=mRNA_M-pyrifera_M_contig81137.18979.1|Name=mRNA_M-pyrifera_M_contig81137.18979.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig81137:11..466+ (Macrocystis pyrifera P11B4 male)
GGGATGGAATTGGAGTTGATTCCACATACTGGGATCGTGATTGGTGATGT GGAGTACTTTTTTGGTGGAGGTATCCAGGCAGCGCATCCTTCTGAAGTTG TGGCTCATTTTGGTCCACCTGTGAAAGTAATCACACTTGGAAGAAGTACA AAGAGTATGAGTGAGTTTCAGGAATTCCTCCGAGAAGCATCATCTCGGTA TCTTCCAACCAGTTATGATTTAATTCGTCATAACTGCAACCACTTTAGCG ATGAAGCTGCACAATTCTTGCTTGGACATGGTATTCCTGAAGACATCTCC AAGCTACCAGAACGTTTGATGGCAACACCAATTGGCACTATGGTAGCACC TATGCTTGATGCAGCACAACGCCAACTTGTAGGTTCACTCCATACACTTG ATCCATATGCAGCATCCACTGCCGCTTCTGCAGCTTCTGCACCTTCTTCT TCCCCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81137:11..466+

>mRNA_M-pyrifera_M_contig81137.18979.1 ID=mRNA_M-pyrifera_M_contig81137.18979.1|Name=mRNA_M-pyrifera_M_contig81137.18979.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig81137:11..466+ (Macrocystis pyrifera P11B4 male)
ATGGAATTGGAGTTGATTCCACATACTGGGATCGTGATTGGTGATGTGGA
GTACTTTTTTGGTGGAGGTATCCAGGCAGCGCATCCTTCTGAAGTTGTGG
CTCATTTTGGTCCACCTGTGAAAGTAATCACACTTGGAAGAAGTACAAAG
AGTATGAGTGAGTTTCAGGAATTCCTCCGAGAAGCATCATCTCGGTATCT
TCCAACCAGTTATGATTTAATTCGTCATAACTGCAACCACTTTAGCGATG
AAGCTGCACAATTCTTGCTTGGACATGGTATTCCTGAAGACATCTCCAAG
CTACCAGAACGTTTGATGGCAACACCAATTGGCACTATGGTAGCACCTAT
GCTTGATGCAGCACAACGCCAACTTGTAGGTTCACTCCATACACTTGATC
CATATGCAGCATCCACTGCCGCTTCTGCAGCTTCTGCACCTTCTTCTTCC
CCAATGGAATTGGAGTTGATTCCACATACTGGGATCGTGATTGGTGATGT
GGAGTACTTTTTTGGTGGAGGTATCCAGGCAGCGCATCCTTCTGAAGTTG
TGGCTCATTTTGGTCCACCTGTGAAAGTAATCACACTTGGAAGAAGTACA
AAGAGTATGAGTGAGTTTCAGGAATTCCTCCGAGAAGCATCATCTCGGTA
TCTTCCAACCAGTTATGATTTAATTCGTCATAACTGCAACCACTTTAGCG
ATGAAGCTGCACAATTCTTGCTTGGACATGGTATTCCTGAAGACATCTCC
AAGCTACCAGAACGTTTGATGGCAACACCAATTGGCACTATGGTAGCACC
TATGCTTGATGCAGCACAACGCCAACTTGTAGGTTCACTCCATACACTTG
ATCCATATGCAGCATCCACTGCCGCTTCTGCAGCTTCTGCACCTTCTTCT
TCCCCA
back to top