mRNA_M-pyrifera_M_contig81132.18978.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81132.18978.1
Unique NamemRNA_M-pyrifera_M_contig81132.18978.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81132.18978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81132contigM-pyrifera_M_contig81132:8..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size927
Cds size927
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816717.1152494-CDS-M-pyrifera_M_contig81132:7..9341622816717.1152494-CDS-M-pyrifera_M_contig81132:7..934Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81132 8..934 +
1692278137.4250047-CDS-M-pyrifera_M_contig81132:7..9341692278137.4250047-CDS-M-pyrifera_M_contig81132:7..934Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81132 8..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81132.18978.1prot_M-pyrifera_M_contig81132.18978.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81132 8..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81132.18978.1

>prot_M-pyrifera_M_contig81132.18978.1 ID=prot_M-pyrifera_M_contig81132.18978.1|Name=mRNA_M-pyrifera_M_contig81132.18978.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=309bp
KATSYTEECLEIRRQVFGNAHPETAASLNNLGSLYVTLKRYSKAEPLLKE
SLNLARTQLGPKHQGTVSAMINLGSLYEAMGKYKQAETLYQQILSVMTQN
YGKDHYRTSVVHDKMAKLYLQMQAYPQAEQHMQQCHTIRQKSLGETHPET
VNALHERGRIYVMQEKYAAAEPIFLKCLELVSSETGENHLQTTILRDNLV
MIFDHLDKYSEAEQLMLKNLKIRRDSLNQKHPDLLYSLNSLGNYYYARQE
YSQALPYFKEALEITQKTRGIEHPATAVAFGRLGNLYRMQGKKSEAEPLL
SQSLKINQK
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mRNA from alignment at M-pyrifera_M_contig81132:8..934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81132.18978.1 ID=mRNA_M-pyrifera_M_contig81132.18978.1|Name=mRNA_M-pyrifera_M_contig81132.18978.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=927bp|location=Sequence derived from alignment at M-pyrifera_M_contig81132:8..934+ (Macrocystis pyrifera P11B4 male)
AAAGCCACTTCCTACACGGAAGAATGCCTGGAGATTCGTCGCCAGGTCTT
CGGGAATGCTCATCCTGAAACAGCGGCTTCACTCAATAACCTGGGATCGC
TATACGTAACATTGAAACGCTATTCCAAGGCTGAGCCACTGCTCAAGGAA
AGCCTCAACCTGGCCCGTACCCAACTGGGTCCAAAGCACCAGGGAACCGT
CTCCGCGATGATTAACCTGGGGTCCCTCTACGAAGCGATGGGAAAATATA
AACAGGCAGAAACGCTTTATCAGCAGATCCTGTCTGTGATGACTCAGAAT
TACGGGAAAGATCATTACCGAACCTCAGTTGTGCACGACAAAATGGCAAA
ACTCTATCTGCAGATGCAGGCTTATCCCCAGGCAGAACAACATATGCAAC
AGTGTCACACTATTCGCCAAAAGTCCCTGGGAGAAACGCATCCCGAGACG
GTCAACGCCTTACATGAGCGGGGACGGATTTACGTGATGCAGGAAAAGTA
TGCGGCAGCAGAACCGATCTTCCTCAAGTGCCTGGAACTCGTCTCCAGCG
AGACTGGGGAAAATCATCTGCAGACTACAATCTTGCGCGATAACCTGGTC
ATGATCTTCGATCATTTGGATAAGTATTCTGAAGCTGAGCAACTCATGCT
GAAAAACCTGAAGATCCGTCGGGACTCTCTAAATCAAAAGCACCCCGACC
TGCTCTATTCGCTCAACAGCCTGGGAAACTATTACTATGCCAGGCAAGAG
TATTCCCAGGCACTGCCTTACTTCAAGGAAGCTTTAGAAATCACGCAAAA
AACCAGGGGCATAGAACATCCTGCTACTGCTGTCGCGTTCGGAAGACTGG
GAAACCTGTATCGGATGCAGGGAAAGAAATCGGAGGCAGAACCACTGCTC
TCTCAATCGCTGAAAATTAACCAGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81132:8..934+

>mRNA_M-pyrifera_M_contig81132.18978.1 ID=mRNA_M-pyrifera_M_contig81132.18978.1|Name=mRNA_M-pyrifera_M_contig81132.18978.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1854bp|location=Sequence derived from alignment at M-pyrifera_M_contig81132:8..934+ (Macrocystis pyrifera P11B4 male)
AAAGCCACTTCCTACACGGAAGAATGCCTGGAGATTCGTCGCCAGGTCTT
CGGGAATGCTCATCCTGAAACAGCGGCTTCACTCAATAACCTGGGATCGC
TATACGTAACATTGAAACGCTATTCCAAGGCTGAGCCACTGCTCAAGGAA
AGCCTCAACCTGGCCCGTACCCAACTGGGTCCAAAGCACCAGGGAACCGT
CTCCGCGATGATTAACCTGGGGTCCCTCTACGAAGCGATGGGAAAATATA
AACAGGCAGAAACGCTTTATCAGCAGATCCTGTCTGTGATGACTCAGAAT
TACGGGAAAGATCATTACCGAACCTCAGTTGTGCACGACAAAATGGCAAA
ACTCTATCTGCAGATGCAGGCTTATCCCCAGGCAGAACAACATATGCAAC
AGTGTCACACTATTCGCCAAAAGTCCCTGGGAGAAACGCATCCCGAGACG
GTCAACGCCTTACATGAGCGGGGACGGATTTACGTGATGCAGGAAAAGTA
TGCGGCAGCAGAACCGATCTTCCTCAAGTGCCTGGAACTCGTCTCCAGCG
AGACTGGGGAAAATCATCTGCAGACTACAATCTTGCGCGATAACCTGGTC
ATGATCTTCGATCATTTGGATAAGTATTCTGAAGCTGAGCAACTCATGCT
GAAAAACCTGAAGATCCGTCGGGACTCTCTAAATCAAAAGCACCCCGACC
TGCTCTATTCGCTCAACAGCCTGGGAAACTATTACTATGCCAGGCAAGAG
TATTCCCAGGCACTGCCTTACTTCAAGGAAGCTTTAGAAATCACGCAAAA
AACCAGGGGCATAGAACATCCTGCTACTGCTGTCGCGTTCGGAAGACTGG
GAAACCTGTATCGGATGCAGGGAAAGAAATCGGAGGCAGAACCACTGCTC
TCTCAATCGCTGAAAATTAACCAGAAAAAAGCCACTTCCTACACGGAAGA
ATGCCTGGAGATTCGTCGCCAGGTCTTCGGGAATGCTCATCCTGAAACAG
CGGCTTCACTCAATAACCTGGGATCGCTATACGTAACATTGAAACGCTAT
TCCAAGGCTGAGCCACTGCTCAAGGAAAGCCTCAACCTGGCCCGTACCCA
ACTGGGTCCAAAGCACCAGGGAACCGTCTCCGCGATGATTAACCTGGGGT
CCCTCTACGAAGCGATGGGAAAATATAAACAGGCAGAAACGCTTTATCAG
CAGATCCTGTCTGTGATGACTCAGAATTACGGGAAAGATCATTACCGAAC
CTCAGTTGTGCACGACAAAATGGCAAAACTCTATCTGCAGATGCAGGCTT
ATCCCCAGGCAGAACAACATATGCAACAGTGTCACACTATTCGCCAAAAG
TCCCTGGGAGAAACGCATCCCGAGACGGTCAACGCCTTACATGAGCGGGG
ACGGATTTACGTGATGCAGGAAAAGTATGCGGCAGCAGAACCGATCTTCC
TCAAGTGCCTGGAACTCGTCTCCAGCGAGACTGGGGAAAATCATCTGCAG
ACTACAATCTTGCGCGATAACCTGGTCATGATCTTCGATCATTTGGATAA
GTATTCTGAAGCTGAGCAACTCATGCTGAAAAACCTGAAGATCCGTCGGG
ACTCTCTAAATCAAAAGCACCCCGACCTGCTCTATTCGCTCAACAGCCTG
GGAAACTATTACTATGCCAGGCAAGAGTATTCCCAGGCACTGCCTTACTT
CAAGGAAGCTTTAGAAATCACGCAAAAAACCAGGGGCATAGAACATCCTG
CTACTGCTGTCGCGTTCGGAAGACTGGGAAACCTGTATCGGATGCAGGGA
AAGAAATCGGAGGCAGAACCACTGCTCTCTCAATCGCTGAAAATTAACCA
GAAA
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