mRNA_M-pyrifera_M_contig8110.18973.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8110.18973.1
Unique NamemRNA_M-pyrifera_M_contig8110.18973.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8110.18973.1 vs. uniprot
Match: A0A6H5JEW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW7_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.710e-36
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 KHRPPPGHPHPECPARVSTAKTELDGLEGVKWATPSSLSSDGDKAATTAAIERVHKREYLDEVKRICAKGGGAADFDT 234
            KHRPPPGHPHPECPARVSTA+ ELD LEG++WATPSSL S+  +    AAIERVH  EYL+EV+R+CAKGGGAADFDT
Sbjct:   37 KHRPPPGHPHPECPARVSTARIELDQLEGIEWATPSSLRSEKGRERALAAIERVHNPEYLEEVRRVCAKGGGAADFDT 114
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BLAST of mRNA_M-pyrifera_M_contig8110.18973.1 vs. uniprot
Match: D7G0C2_ECTSI (Histone deacetylase family protein, plastidal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C2_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.070e-35
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 KHRPPPGHPHPECPARVSTAKTELDGLEGVKWATPSSLSSDGDKAATTAAIERVHKREYLDEVKRICAKGGGAADFDT 234
            KHRPPPGHPHPECPARVSTA++ELD LEG++WATPSSL S+  +  T AAIERVH  EYL+EV R+CAKGGGAADFDT
Sbjct:   94 KHRPPPGHPHPECPARVSTARSELDRLEGIEWATPSSLQSEKGRERTLAAIERVHNPEYLEEVLRVCAKGGGAADFDT 171
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BLAST of mRNA_M-pyrifera_M_contig8110.18973.1 vs. uniprot
Match: A0A0W8FAV3_9ZZZZ (Acetylspermidine deacetylase n=5 Tax=root TaxID=1 RepID=A0A0W8FAV3_9ZZZZ)

HSP 1 Score: 49.7 bits (117), Expect = 4.410e-5
Identity = 27/71 (38.03%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:   28 HPECPARVSTA--KTELDGLEGVKWATPSSLSSDGDKAATTAAIERVHKREYLDEVKRICAKGGGAADFDT 234
            HPE   R++    + E +GL+ ++  TP        K AT   +E +H R Y+D+VK IC +GGG  D DT
Sbjct:   22 HPERKERLTAILDRIESEGLD-IECITP--------KPATIEQVESIHGRNYIDQVKAICERGGGHLDIDT 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8110.18973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JEW7_9PHAE7.710e-3675.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0C2_ECTSI2.070e-3576.92Histone deacetylase family protein, plastidal n=1 ... [more]
A0A0W8FAV3_9ZZZZ4.410e-538.03Acetylspermidine deacetylase n=5 Tax=root TaxID=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8110contigM-pyrifera_M_contig8110:546..2581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.1e-29
Seed eggNOG ortholog2880.D7G0C2
KEGG koko:K11407
KEGG Pathwayko05034,ko05165,ko05203,map05034,map05165,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
Ec32 ortholog descriptionHistone deacetylase
Ec32 orthologEc-02_001000.1
EC3.5.1.98
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03019,ko03036,ko04131
Exons2
Model size239
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816716.7589545-CDS-M-pyrifera_M_contig8110:545..6981622816716.7589545-CDS-M-pyrifera_M_contig8110:545..698Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8110 546..698 -
1692278137.223789-CDS-M-pyrifera_M_contig8110:545..6981692278137.223789-CDS-M-pyrifera_M_contig8110:545..698Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8110 546..698 -
1622816716.7730901-CDS-M-pyrifera_M_contig8110:2497..25811622816716.7730901-CDS-M-pyrifera_M_contig8110:2497..2581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8110 2498..2581 -
1692278137.2376463-CDS-M-pyrifera_M_contig8110:2497..25811692278137.2376463-CDS-M-pyrifera_M_contig8110:2497..2581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8110 2498..2581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8110.18973.1prot_M-pyrifera_M_contig8110.18973.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8110 546..2581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8110.18973.1

>prot_M-pyrifera_M_contig8110.18973.1 ID=prot_M-pyrifera_M_contig8110.18973.1|Name=mRNA_M-pyrifera_M_contig8110.18973.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
KHRPPPGHPHPECPARVSTAKTELDGLEGVKWATPSSLSSDGDKAATTAA
IERVHKREYLDEVKRICAKGGGAADFDT*
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mRNA from alignment at M-pyrifera_M_contig8110:546..2581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8110.18973.1 ID=mRNA_M-pyrifera_M_contig8110.18973.1|Name=mRNA_M-pyrifera_M_contig8110.18973.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2036bp|location=Sequence derived from alignment at M-pyrifera_M_contig8110:546..2581- (Macrocystis pyrifera P11B4 male)
AAGCACCGGCCCCCGCCCGGCCACCCCCATCCAGAATGCCCTGCAAGGGT
CTCGACGGCCAAGACGGAGCTTGACGGCCTTGAGGTATGTCGAATCACGC
GCACGCTGCTTCCCGACTCGGTGGTTTTTCATGTTTCGTTCGGTTTGTTG
CCTTAAACCCTCTTATCACCGCAGTCCCGTGTTGGGGACAAACTACTGGA
AATTTGACTGCTTTGCCCCCAAAACGGGACTGGTTGTAACCCTATTATTA
CGGGGGTCTATAGTTAACAGGACCTATGGTATACATAAAAACCTATATAT
TTACCTATTTTTACTAGCAATATTGGGTCCTATTTACTATGGCCCCCCGT
AATGATAGGGATAACAGGTACCAGTATTGACCATAAATGTAAGGCACGTT
TTCGGCATTTTGTGTTTTACCTATATCAACGTACCCAATATTTACGATCA
GACTGGTGCATCTATACTTATTTGTGTGTCGTGCGCCTCGGGGGGTGGAA
GTTGACTAGTTCACGCTGAAGTTGATCGAGTCGTTGGTTCGCTAGTGTCA
CCCACCCTTGACCCTCTCCAATTTGTTTATACATTTACGGCACTACTGTA
GTAGTGGTCCCTCTCCATAGTGCTGGTATTGCGCCAGAGGCCAACAATAC
CGGCACTACAGTATATACTCCGCACACTGACTGCCGAACCGGTTAATGCC
GACCGCGCCAAGCGATTCCACAAGTAGTCGCTCCGGCGGGCAGCCGGACA
CTGCTCTACCGATACTGTAGAGAGACCGACACTTACAGCAGCAGACTTAC
GTACGCGCAATATACATACCAGGTATACTTTTCCTGTGGGGCCCTCGGCC
GTTTATATGGGCTTTCCGCCAACCATAGTGATGTGTCGCTTACGGTTTAG
TTTTTTTTTGTCCTTCTCTGCCTACCCTGTGCTGTACTAGCTACTCTGTC
CCGAAATATAAGATTTTTTTTTATGCTAATATTCAGTCAGAATGGTCCTT
ACAGTTGGGGACAGAGTGGTGTACCGTACGTGGACTGCTTGTGTCGTTTC
GTGTGGGTTGTTTTAATGTCCTTGTTGACCAAGACAGCACGCTCACACAG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTGTTGCGACA
TCGGCCCGCGATCGACGAGCGTGCGAGAGGTCGACCAACTTATCTACCGG
TACCGCATGCTACGATAAGAGCGAGAGACGATTCCATTTTACGATGTCAG
ACCCCTCGTCACCGGAACAAGCTCGTTGAATGAACTGCAGCCCTCTGACT
GCCCCGCGTTTTTTTCTGGTCTTATGCTCAGTATGCGGGGCGGGAGTCTG
TGATCTATTATCGATCTCGTATCATAGCTCATGGTTGCTCGGTGGAACCG
TATCACCTGCAATGATCTGTGTAGGACATGTTGGTTGGGTTGGATCTATC
TGTACTATACAGCAGATCCTGCACAGACTGTCATACCAGCAGCTAAGGAA
CTGCTAGATGATCTGTAGATGATCTGTAGATAGGTAGATCATGGTCTGTC
GGAGTTGTGGTGCACCTGCGTTTGACATGATTGCTTTTCGCGAGGGGGGT
ATCTCCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCGTCCTC
GTCCTCCTCGTCCTCCTCGTCCTCCTCGTCCTCCTCCTCCCCCTCCTCCT
CCTCCCCCTCCTCCTCCTCCTCCTCCTCCGCCTCCTGCTCCTCCTCCTCC
TCCTCCTCCTCCTCCCCCCCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTGCCGTGCGAATTGACCTCTCTCGCCTT
GCCGCACTCGACCGCACCCCCGCTAAACAACAGGGGGTGAAATGGGCGAC
GCCTTCTTCCCTTTCTTCCGACGGGGACAAGGCAGCCACGACGGCCGCCA
TCGAAAGGGTGCACAAGCGGGAATATCTGGACGAGGTGAAGCGAATCTGC
GCCAAGGGTGGCGGGGCCGCCGATTTTGACACGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8110:546..2581-

>mRNA_M-pyrifera_M_contig8110.18973.1 ID=mRNA_M-pyrifera_M_contig8110.18973.1|Name=mRNA_M-pyrifera_M_contig8110.18973.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig8110:546..2581- (Macrocystis pyrifera P11B4 male)
AAGCACCGGCCCCCGCCCGGCCACCCCCATCCAGAATGCCCTGCAAGGGT
CTCGACGGCCAAGACGGAGCTTGACGGCCTTGAGAAGCACCGGCCCCCGC
CCGGCCACCCCCATCCAGAATGCCCTGCAAGGGTCTCGACGGCCAAGACG
GAGCTTGACGGCCTTGAGGGGGTGAAATGGGCGACGCCTTCTTCCCTTTC
TTCCGACGGGGACAAGGCAGCCACGACGGCCGCCATCGAAAGGGTGCACA
AGCGGGAATATCTGGACGAGGTGAAGCGAATCTGCGCCAAGGGTGGCGGG
GCCGCCGATTTTGACACGTGAGGGGTGAAATGGGCGACGCCTTCTTCCCT
TTCTTCCGACGGGGACAAGGCAGCCACGACGGCCGCCATCGAAAGGGTGC
ACAAGCGGGAATATCTGGACGAGGTGAAGCGAATCTGCGCCAAGGGTGGC
GGGGCCGCCGATTTTGACACGTGA
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