mRNA_M-pyrifera_M_contig81085.18971.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81085.18971.1
Unique NamemRNA_M-pyrifera_M_contig81085.18971.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Match: A0A5A8DYP0_CAFRO (MFS domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DYP0_CAFRO)

HSP 1 Score: 125 bits (315), Expect = 1.240e-31
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 MLILFTLCNLLNYMDRGVIPGAFTNIGQFARES---TGSNKEDSLLGSLQSAFIVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAISPAYWVLVLARVLSGVG 321
            M++LF   NLLNYMDRG++ G +  + +F  ++     ++  D+  G L SAFIV YA++SV  GHL+HRFPPF+LMAVGL +WC+AVV CA+SP YWVL+  R LSGVG
Sbjct:   17 MVVLFCYINLLNYMDRGIVSGGYQLLNKFIMDTLPGASADNVDAFRGFLTSAFIVSYALSSVAFGHLVHRFPPFKLMAVGLFVWCIAVVTCAVSPNYWVLLFGRALSGVG 126          
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Match: A0A5A8CVH5_CAFRO (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8CVH5_CAFRO)

HSP 1 Score: 125 bits (315), Expect = 1.470e-31
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 MLILFTLCNLLNYMDRGVIPGAFTNIGQFARES---TGSNKEDSLLGSLQSAFIVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAISPAYWVLVLARVLSGVG 321
            M++LF   NLLNYMDRG++ G +  + +F  ++     ++  D+  G L SAFIV YA++SV  GHL+HRFPPF+LMAVGL +WC+AVV CA+SP YWVL+  R LSGVG
Sbjct:   17 MVVLFCYINLLNYMDRGIVSGGYQLLNKFIMDTLPGASADNVDAFRGFLTSAFIVSYALSSVAFGHLVHRFPPFKLMAVGLFVWCIAVVTCAVSPNYWVLLFGRALSGVG 126          
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Match: A0A5A8D2J4_CAFRO (MFS domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D2J4_CAFRO)

HSP 1 Score: 105 bits (263), Expect = 2.280e-24
Identity = 51/106 (48.11%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    7 ILFTLC-NLLNYMDRGVIPGAFTNIGQFARESTGSNKEDSLLGSLQSAFIVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAISPAYWVLVLARVLSGVG 321
            I+F +C N   Y+DRG++PGAF           G +  D+  G+L S FI+GYAVAS V+G L+H  PPFR++  GLL+W  ++V+ A +P+YWVL++AR LSGVG
Sbjct:    8 IIFFICINFCIYVDRGIVPGAFQQFDAMIERELGPDNVDTYFGALTSVFIIGYAVASFVVGQLVHLAPPFRIVGSGLLLWTASIVLAACAPSYWVLLVARGLSGVG 113          
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Match: A0A0G4FTI3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FTI3_9ALVE)

HSP 1 Score: 101 bits (252), Expect = 7.260e-23
Identity = 51/102 (50.00%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   25 NLLNYMDRGVIPGAFTNIGQFARESTGSNKEDSLLGSLQSAFIVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAISP---AYWVLVLARVLSGVG 321
            NLL Y+DRG+IPGA  +   F  E+  + K D  +G LQSAFI G +++ +V GHL+HRF PFRLM++GL IW +++++CA++    +YW+L+ AR+LSGVG
Sbjct:   34 NLLVYIDRGIIPGANQSFTAFVNETL-NEKPDFFVGLLQSAFIAGVSISMLVFGHLVHRFHPFRLMSLGLFIWSLSLLLCALAGWVYSYWLLLFARMLSGVG 134          
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Match: A0A4D9D5W1_9STRA (MFS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5W1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.070e-22
Identity = 48/102 (47.06%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   25 NLLNYMDRGVIPGAFTNIGQFARESTGSNKEDSLLGSLQSAFIVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAIS---PAYWVLVLARVLSGVG 321
            NLLNY+DRG+IPGA      F   S G++  D  +G LQSAFIVG+++A++V GH+IH   PF+++ VGL+IW +A  +  ++    +Y++L +AR+LSGVG
Sbjct:   27 NLLNYIDRGIIPGAAEEFSDFVAHSLGTSSPDLFVGLLQSAFIVGFSLAAIVFGHVIHYVAPFKMVGVGLVIWIIATALSGLAHHVASYYLLCIARMLSGVG 128          
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Match: A0A812VLG0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VLG0_9DINO)

HSP 1 Score: 99.4 bits (246), Expect = 4.040e-22
Identity = 44/86 (51.16%), Postives = 68/86 (79.07%), Query Frame = 1
Query:   64 AFTNIGQFARESTGSNKEDSLLGSLQSAFIVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAISPAYWVLVLARVLSGVG 321
            AF+ I  F +E+  +++ D+ LGSL SAFIVGYAV  +   +L+HR+PPF++M++GL+IW +AV++ ++SP YW+L+L+R LSGVG
Sbjct:    1 AFSQIDDFLKEALNTDQVDAYLGSLSSAFIVGYAVTGLFAANLVHRYPPFKVMSIGLIIWVIAVLLTSVSPTYWMLLLSRGLSGVG 86          
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Match: A0A7S3K5S4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5S4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.100e-21
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 MLILFTLCNLLNYMDRGVIPGAFTNIGQFARESTGSNKEDSLLGSLQSAFIVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAIS---PAYWVLVLARVLSGVG 321
            M+I+  L NL+NY+DRG+IPG   +   F   +T      +  G+LQS FIVG++V SVV+GHL+H   PF+L A+GL+IWCV+     IS    +Y +L++AR++SGVG
Sbjct:   11 MMIVLILTNLVNYIDRGIIPGTSDHFYSFIGATTSGRSTSTYFGALQSGFIVGFSVGSVVVGHLVHTRSPFKLAALGLMIWCVSGFAAGISRYLKSYELLLIARIVSGVG 120          
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Match: A0A7S0DJT0_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DJT0_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 9.740e-21
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   10 LFTLCNLLNYMDRGVIPGAFTNIGQFAREST--GSNKEDSLLGSLQSAFIVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAISP---AYWVLVLARVLSGVG 321
            +F   N+LNY+DRG+IPGA      F R +     N+E + LG LQS FI  Y++A +  G+L+H++PPF +M +GL IWCVAV I   +    ++W+L+  R LSGVG
Sbjct:   69 MFVGVNILNYLDRGIIPGAPNQFQSFIRNTIMIDENQESTYLGILQSVFIASYSLAVIAAGNLVHKYPPFLVMGMGLAIWCVAVFISGAAQGWGSFWLLLFGRTLSGVG 177          
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Match: UPI0007114A09 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007114A09)

HSP 1 Score: 94.0 bits (232), Expect = 2.620e-20
Identity = 48/107 (44.86%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 MLILFTLCNLLNYMDRGVIPGAFTNIGQFARESTGSNKEDSLLGSLQSAFIVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAISPAYWVLVLARVLSGVG 321
            +L LF   NLLNY++R VI G+   I +F R+S  ++ E++  G+L S FI G+++AS++ G+ +  FPPFR+++ GLL W  A +   ++P YWVL++AR+LSGVG
Sbjct:   34 LLALFFFMNLLNYLERVVISGSSEKILEFVRKSVPTH-ENTFFGALTSVFICGFSIASILFGYYVTLFPPFRVVSFGLLCWFCASIASGLAPNYWVLLVARMLSGVG 139          
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Match: A0A7S3ZWD4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWD4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.960e-20
Identity = 47/110 (42.73%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 MLILFTLCNLLNYMDRGVIPGAFTNIGQFARESTGSNKEDSLLGSLQSAFIVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAISP---AYWVLVLARVLSGVG 321
            +++L    N+LNY+DRG++PGA      F   S  +    +  G+L SAFIVG+++ASVV+GHL HR PPF+L  VGLLIWC ++++  ++    +Y +L+ AR + G G
Sbjct:   11 LMVLLISTNILNYIDRGIVPGASGAFDSFIEGSETTWGTSAAFGALTSAFIVGFSIASVVVGHLAHRVPPFKLCGVGLLIWCFSMLLAGLAKPLKSYALLITARAVGGCG 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81085.18971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DYP0_CAFRO1.240e-3154.55MFS domain-containing protein n=1 Tax=Cafeteria ro... [more]
A0A5A8CVH5_CAFRO1.470e-3154.55Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A5A8D2J4_CAFRO2.280e-2448.11MFS domain-containing protein n=4 Tax=Cafeteria ro... [more]
A0A0G4FTI3_9ALVE7.260e-2350.00Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A4D9D5W1_9STRA3.070e-2247.06MFS domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A812VLG0_9DINO4.040e-2251.16Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S3K5S4_9STRA1.100e-2146.36Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0DJT0_9EUKA9.740e-2144.95Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
UPI0007114A092.620e-2044.86hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A7S3ZWD4_9STRA6.960e-2042.73Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81085contigM-pyrifera_M_contig81085:3..323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue3.9e-16
Seed eggNOG ortholog42099.EPrPV00000022881
KEGG koko:K09008
KEGG Pathwayko04714,map04714
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.Major Facilitator Superfamily (MFS). Source PGD
EggNOG OGs1MEWZ@121069,COG0477@1,KOG1330@2759
COG Functional cat.G
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons1
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816716.6918538-CDS-M-pyrifera_M_contig81085:2..3231622816716.6918538-CDS-M-pyrifera_M_contig81085:2..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81085 3..323 -
1692278137.1970577-CDS-M-pyrifera_M_contig81085:2..3231692278137.1970577-CDS-M-pyrifera_M_contig81085:2..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81085 3..323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81085.18971.1prot_M-pyrifera_M_contig81085.18971.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81085 3..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81085.18971.1

>prot_M-pyrifera_M_contig81085.18971.1 ID=prot_M-pyrifera_M_contig81085.18971.1|Name=mRNA_M-pyrifera_M_contig81085.18971.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MLILFTLCNLLNYMDRGVIPGAFTNIGQFARESTGSNKEDSLLGSLQSAF
IVGYAVASVVMGHLIHRFPPFRLMAVGLLIWCVAVVICAISPAYWVLVLA
RVLSGVG
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mRNA from alignment at M-pyrifera_M_contig81085:3..323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81085.18971.1 ID=mRNA_M-pyrifera_M_contig81085.18971.1|Name=mRNA_M-pyrifera_M_contig81085.18971.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig81085:3..323- (Macrocystis pyrifera P11B4 male)
ATGTTGATCCTGTTTACGTTGTGCAATCTGCTCAACTACATGGATCGAGG TGTAATTCCTGGTGCATTCACGAACATTGGGCAGTTTGCACGAGAAAGCA CGGGATCAAACAAAGAGGACTCGTTGTTGGGGAGTTTGCAGAGCGCTTTC ATTGTTGGGTATGCCGTTGCCTCAGTGGTCATGGGGCATTTGATTCATCG ATTTCCTCCTTTTCGATTGATGGCTGTTGGATTGCTGATTTGGTGCGTGG CGGTGGTAATTTGTGCCATTTCTCCTGCCTACTGGGTCCTTGTACTCGCA AGAGTGTTGTCTGGTGTAGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81085:3..323-

>mRNA_M-pyrifera_M_contig81085.18971.1 ID=mRNA_M-pyrifera_M_contig81085.18971.1|Name=mRNA_M-pyrifera_M_contig81085.18971.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig81085:3..323- (Macrocystis pyrifera P11B4 male)
ATGTTGATCCTGTTTACGTTGTGCAATCTGCTCAACTACATGGATCGAGG
TGTAATTCCTGGTGCATTCACGAACATTGGGCAGTTTGCACGAGAAAGCA
CGGGATCAAACAAAGAGGACTCGTTGTTGGGGAGTTTGCAGAGCGCTTTC
ATTGTTGGGTATGCCGTTGCCTCAGTGGTCATGGGGCATTTGATTCATCG
ATTTCCTCCTTTTCGATTGATGGCTGTTGGATTGCTGATTTGGTGCGTGG
CGGTGGTAATTTGTGCCATTTCTCCTGCCTACTGGGTCCTTGTACTCGCA
AGAGTGTTGTCTGGTGTAGGCATGTTGATCCTGTTTACGTTGTGCAATCT
GCTCAACTACATGGATCGAGGTGTAATTCCTGGTGCATTCACGAACATTG
GGCAGTTTGCACGAGAAAGCACGGGATCAAACAAAGAGGACTCGTTGTTG
GGGAGTTTGCAGAGCGCTTTCATTGTTGGGTATGCCGTTGCCTCAGTGGT
CATGGGGCATTTGATTCATCGATTTCCTCCTTTTCGATTGATGGCTGTTG
GATTGCTGATTTGGTGCGTGGCGGTGGTAATTTGTGCCATTTCTCCTGCC
TACTGGGTCCTTGTACTCGCAAGAGTGTTGTCTGGTGTAGGC
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