mRNA_M-pyrifera_M_contig81084.18970.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81084.18970.1
Unique NamemRNA_M-pyrifera_M_contig81084.18970.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81084.18970.1 vs. uniprot
Match: W5N330_LEPOC (Alpha-L-iduronidase n=3 Tax=Lepisosteidae TaxID=7915 RepID=W5N330_LEPOC)

HSP 1 Score: 95.5 bits (236), Expect = 8.890e-20
Identity = 60/137 (43.80%), Postives = 74/137 (54.01%), Query Frame = 1
Query:   94 LPHFWNSAGYCPGAPHETESIPYSLSEDMHQNLLYIGSVPHTADAWALEPSVRIHWLFDLVKPISGLGQCGEDEVVCVPEMGENGAFNFSALDTLLDRLSGAKLRPGFELMGLAGGGAIWTDFDNATQVQWWAAFVN 504
            L HFW S G+CP  PH+T    Y LS+D   NL YIGS+PH      +E  VRIHWL +LV                V  + E   +NF+ LD L+D L    LRPGFELMG AGG   +TDF++  QV  W   V+
Sbjct:   44 LKHFWKSTGFCPPLPHDTADK-YVLSKDQQMNLAYIGSIPHKG----IE-QVRIHWLLELVT---------------VNVVNEEPHYNFTKLDKLIDLLWQNGLRPGFELMGSAGG--YFTDFEDKRQVMEWKKMVS 157          
BLAST of mRNA_M-pyrifera_M_contig81084.18970.1 vs. uniprot
Match: UPI0018897D00 (alpha-L-iduronidase-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI0018897D00)

HSP 1 Score: 93.6 bits (231), Expect = 4.000e-19
Identity = 58/132 (43.94%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   40 EKSAALDFRV--NFSHVLTPLPHFWNSAGYCPGAPHETESIPYSLSEDMHQNLLYIGSVPHTADAWALEPSVRIHWLFDLVKPISGLGQCGEDEVVCVPEMGENGAFNFSALDTLLDRLSGAKLRPGFELMG 429
            E+S    F+V  N S VL  L  FW S G+CP  PH      + L +DM QNL+YI SVP           VR+HWL DLV   +              EMG + AFNFS LDTLLDR+    L+PG ELMG
Sbjct:   35 EQSTTKSFQVFLNASDVLGVLKPFWKSTGFCPPEPHNDPE--FFLGDDMQQNLIYIASVPGYGTT-----QVRMHWLLDLVNASAS------------SEMGRSTAFNFSLLDTLLDRVRALGLKPGLELMG 147          
BLAST of mRNA_M-pyrifera_M_contig81084.18970.1 vs. uniprot
Match: R7TWI8_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TWI8_CAPTE)

HSP 1 Score: 89.7 bits (221), Expect = 9.400e-18
Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   55 LDFRVNFSHVLTPLPHFWNSAGYCPGAPHETESIPYSLSEDMHQNLLYIGSVPHTADAWALEPSVRIHWLFDLVKPISGLGQCGEDEVVCVPEMGENGAFNFSALDTLLDRLSGAKLRPGFELMGLAGGGAIWTDFDNATQVQWWAAFV 501
            +D  V    V   + HFW S G+CP  PH++ +  + LSE M QNL ++GS+P+          VR+HWL D V     + Q  +  V+          +NF+ LD +++ L    L+PGFELMG      I+TDF N TQV+WWA  V
Sbjct:  103 VDVFVESDSVKRNISHFWESTGFCPPDPHQS-ACAFFLSESMRQNLAFLGSIPNGG-----LKQVRMHWLLDAVY----VTQVKQRNVI----------YNFTCLDEVIEILWQNGLKPGFELMGNPSN--IFTDFQNNTQVRWWADLV 229          
BLAST of mRNA_M-pyrifera_M_contig81084.18970.1 vs. uniprot
Match: UPI001898E001 (alpha-L-iduronidase-like isoform X1 n=2 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001898E001)

HSP 1 Score: 85.1 bits (209), Expect = 3.730e-16
Identity = 52/128 (40.62%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   46 SAALDFRVNFSHVLTPLPHFWNSAGYCPGAPHETESIPYSLSEDMHQNLLYIGSVPHTADAWALEPSVRIHWLFDLVKPISGLGQCGEDEVVCVPEMGENGAFNFSALDTLLDRLSGAKLRPGFELMG 429
            S +    VN S V+  +  FW S G+CP  PH      + L +DM QNL+YI SVP           VR+HWL DLV   +              E+G +  F+FS LDTLLDRL    L+PG ELMG
Sbjct:   45 SKSFQVFVNASDVVGVVKPFWKSTGFCPPEPHNDPE--FFLGDDMQQNLIYIASVPGYGTT-----QVRMHWLLDLVNASTS------------SEIGGSTTFDFSLLDTLLDRLRALGLKPGLELMG 153          
BLAST of mRNA_M-pyrifera_M_contig81084.18970.1 vs. uniprot
Match: UPI00109BEB45 (alpha-L-iduronidase n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BEB45)

HSP 1 Score: 83.2 bits (204), Expect = 1.770e-15
Identity = 57/148 (38.51%), Postives = 76/148 (51.35%), Query Frame = 1
Query:   61 FRVNFSHVLTPLPHFWNSAGYCPGAPHETESIPYSLSEDMHQNLLYIGSVPHTADAWALEPSVRIHWLFDLVKPISGLGQCGEDEVVCVPEMGENGAFNFSALDTLLDRL-SGAKLRPGFELMGLAGGGAIWTDFDNATQVQWWAAFV 501
            F +N S ++  L HFW S G+CP  PH +E   +  + DM QNL+Y+GSVP+   +      VRIH+L DLV   S    C    +V          F+F  LD  LD L    +LRPGFELMG       +TDFD+  Q+  W   +
Sbjct:   38 FTLNASTIVNKLDHFWKSTGFCPPDPH-SEFHKFMATNDMAQNLVYVGSVPNQGIS-----QVRIHFLLDLVSMYS----CQNGSLV----------FSFVHLDEALDMLVKDNRLRPGFELMGNPSN--YFTDFDDDKQIYDWMKLI 163          
BLAST of mRNA_M-pyrifera_M_contig81084.18970.1 vs. uniprot
Match: UPI00193AAB23 (alpha-L-iduronidase-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193AAB23)

HSP 1 Score: 82.8 bits (203), Expect = 2.370e-15
Identity = 55/148 (37.16%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   58 DFRVNFSHVLTPLPHFWNSAGYCPGAPHETESIPYSLSEDMHQNLLYIGSVPHTADAWALEPSVRIHWLFDLVKPISGLGQCGEDEVVCVPEMGENGAFNFSALDTLLDRLSGAKLRPGFELMGLAGGGAIWTDFDNATQVQWWAAFV 501
            +  V+ S+++    HFW S G CP  PH+  S  Y LS+DM QNL++IGSVPH+         VR+HWL D+V           D+        E   +NF+ LDTL   +    L PGFELMG       +T+FD+  Q+  W   V
Sbjct:   33 NITVDASNLINVFDHFWESTGMCPPLPHQNASD-YYLSQDMLQNLIHIGSVPHSGIK-----QVRMHWLLDMVT---------YDK--------EKHTYNFTNLDTLFKFMRKYNLNPGFELMGSPSN--KFTNFDDHDQIIDWMNLV 155          
BLAST of mRNA_M-pyrifera_M_contig81084.18970.1 vs. uniprot
Match: A7RUK2_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RUK2_NEMVE)

HSP 1 Score: 76.6 bits (187), Expect = 3.260e-13
Identity = 53/147 (36.05%), Postives = 71/147 (48.30%), Query Frame = 1
Query:   67 VNFSHVLTPLPHFWNSAGYCPGAPHETESIPYSLSEDMHQNLLYIGSVPHTADAWALEPSVRIHWLFDLVKPISGLGQCGEDEVVCVPEMGENGAFNF--SALDTLLDRLSGAKLRPGFELMGLAGGGAIWTDFDNATQVQWWAAFV 501
            ++ S  L+ L HFW S G+CP  PH+ +   +  + DM QNL YIGSVP+          VRIHWL DL+                  E   NG  ++    LD LL  L    L+PGFE+MG   G   + DFD+A ++  W   V
Sbjct:    5 IDASSKLSQLEHFWESTGFCPPDPHK-DFYKFVSTNDMAQNLAYIGSVPNQGIK-----QVRIHWLLDLISM----------------ETLPNGTMSYVYKHLDVLLHMLLKHGLKPGFEIMGNPSG--FFKDFDDAEEIYAWRDMV 127          
BLAST of mRNA_M-pyrifera_M_contig81084.18970.1 vs. uniprot
Match: A7RUK1_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RUK1_NEMVE)

HSP 1 Score: 76.3 bits (186), Expect = 4.150e-13
Identity = 53/147 (36.05%), Postives = 71/147 (48.30%), Query Frame = 1
Query:   67 VNFSHVLTPLPHFWNSAGYCPGAPHETESIPYSLSEDMHQNLLYIGSVPHTADAWALEPSVRIHWLFDLVKPISGLGQCGEDEVVCVPEMGENGAFNF--SALDTLLDRLSGAKLRPGFELMGLAGGGAIWTDFDNATQVQWWAAFV 501
            ++ S  L+ L HFW S G+CP  PH+ +   +  + DM QNL YIGSVP+          VRIHWL DL+                  E   NG  ++    LD LL  L    L+PGFE+MG   G   + DFD+A ++  W   V
Sbjct:   32 IDASSKLSQLEHFWESTGFCPPDPHK-DFYRFVSTNDMAQNLAYIGSVPNQGIK-----QVRIHWLLDLISM----------------ETLPNGTMSYVYKHLDVLLHMLLKHGLKPGFEIMGNPSG--FFKDFDDAEEIYAWRDMV 154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81084.18970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
W5N330_LEPOC8.890e-2043.80Alpha-L-iduronidase n=3 Tax=Lepisosteidae TaxID=79... [more]
UPI0018897D004.000e-1943.94alpha-L-iduronidase-like n=1 Tax=Rhipicephalus mic... [more]
R7TWI8_CAPTE9.400e-1837.58Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
UPI001898E0013.730e-1640.63alpha-L-iduronidase-like isoform X1 n=2 Tax=Dermac... [more]
UPI00109BEB451.770e-1538.51alpha-L-iduronidase n=1 Tax=Exaiptasia diaphana Ta... [more]
UPI00193AAB232.370e-1537.16alpha-L-iduronidase-like n=1 Tax=Styela clava TaxI... [more]
A7RUK2_NEMVE3.260e-1336.05Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
A7RUK1_NEMVE4.150e-1336.05Predicted protein n=2 Tax=Nematostella vectensis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81084contigM-pyrifera_M_contig81084:10..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score105.1
Seed ortholog evalue3.1e-20
Seed eggNOG ortholog6500.XP_005093685.1
Preferred nameIDUA
KEGG koko:K01217
KEGG ReactionR07813,R07822
KEGG Pathwayko00531,ko01100,ko04142,map00531,map01100,map04142
KEGG ModuleM00076,M00078
Hectar predicted targeting categorysignal peptide
GOsGO:0000323,GO:0000902,GO:0001501,GO:0003674,GO:0003824,GO:0003940,GO:0004553,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005775,GO:0005975,GO:0005984,GO:0006022,GO:0006026,GO:0006027,GO:0006029,GO:0006082,GO:0006790,GO:0006807,GO:0006996,GO:0007033,GO:0007040,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009311,GO:0009653,GO:0009887,GO:0009987,GO:0016043,GO:0016054,GO:0016787,GO:0016798,GO:0017144,GO:0019538,GO:0019752,GO:0030135,GO:0030203,GO:0030204,GO:0030205,GO:0030207,GO:0030209,GO:0031410,GO:0031974,GO:0031982,GO:0032501,GO:0032502,GO:0032787,GO:0032989,GO:0035107,GO:0035108,GO:0042592,GO:0042737,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044262,GO:0044273,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0048513,GO:0048705,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0048878,GO:0050654,GO:0050655,GO:0060173,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0072329,GO:0080171,GO:0097708,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903510
EggNOG free text desc.L-iduronidase activity
EggNOG OGs2QRES@2759,38DZY@33154,3BH7F@33208,3CWYT@33213,COG3664@1
EC3.2.1.76
COG Functional cat.G
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size504
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81084.18970.1prot_M-pyrifera_M_contig81084.18970.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81084 10..567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816716.6356547-CDS-M-pyrifera_M_contig81084:9..2671622816716.6356547-CDS-M-pyrifera_M_contig81084:9..267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81084 10..267 -
1692278137.1605635-CDS-M-pyrifera_M_contig81084:9..2671692278137.1605635-CDS-M-pyrifera_M_contig81084:9..267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81084 10..267 -
1622816716.6463692-CDS-M-pyrifera_M_contig81084:324..5671622816716.6463692-CDS-M-pyrifera_M_contig81084:324..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81084 325..567 -
1692278137.1772852-CDS-M-pyrifera_M_contig81084:324..5671692278137.1772852-CDS-M-pyrifera_M_contig81084:324..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81084 325..567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816716.656658-UTR-M-pyrifera_M_contig81084:567..5701622816716.656658-UTR-M-pyrifera_M_contig81084:567..570Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81084 568..570 -
1692278137.1867588-UTR-M-pyrifera_M_contig81084:567..5701692278137.1867588-UTR-M-pyrifera_M_contig81084:567..570Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81084 568..570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81084.18970.1

>prot_M-pyrifera_M_contig81084.18970.1 ID=prot_M-pyrifera_M_contig81084.18970.1|Name=mRNA_M-pyrifera_M_contig81084.18970.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
MFVFVTVVGGLVEKSAALDFRVNFSHVLTPLPHFWNSAGYCPGAPHETES
IPYSLSEDMHQNLLYIGSVPHTADAWALEPSVRIHWLFDLVKPISGLGQC
GEDEVVCVPEMGENGAFNFSALDTLLDRLSGAKLRPGFELMGLAGGGAIW
TDFDNATQVQWWAAFVN
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mRNA from alignment at M-pyrifera_M_contig81084:10..570-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81084.18970.1 ID=mRNA_M-pyrifera_M_contig81084.18970.1|Name=mRNA_M-pyrifera_M_contig81084.18970.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig81084:10..570- (Macrocystis pyrifera P11B4 male)
TGGATGTTTGTGTTTGTGACGGTGGTTGGAGGTTTGGTGGAGAAAAGCGC AGCGTTGGATTTTCGGGTGAACTTTTCTCACGTGCTGACTCCTTTGCCGC ACTTTTGGAACTCTGCGGGGTACTGTCCTGGCGCTCCGCACGAGACGGAG TCGATTCCGTACTCTTTGTCGGAGGACATGCACCAGAATCTGCTGTACAT CGGCTCAGTGCCGCACACGGCAGATGCGTGGGCGTTGGAGCCTAGCGTGT TCGGCAACCGCACTCAATTTCACCCGGCGGTGTCGTCGTCGGGTCCTTGG CAGGTGCGCATCCACTGGCTGTTCGATTTGGTGAAGCCGATTTCGGGACT GGGCCAATGTGGGGAGGATGAGGTGGTTTGCGTGCCTGAGATGGGAGAGA ACGGCGCGTTCAATTTTTCCGCACTGGACACGCTGCTGGACCGGCTCTCT GGGGCGAAGCTGCGTCCGGGGTTCGAGCTGATGGGTTTGGCTGGGGGAGG GGCCATTTGGACCGATTTCGACAATGCCACACAAGTGCAGTGGTGGGCTG CGTTTGTGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81084:10..570-

>mRNA_M-pyrifera_M_contig81084.18970.1 ID=mRNA_M-pyrifera_M_contig81084.18970.1|Name=mRNA_M-pyrifera_M_contig81084.18970.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig81084:10..570- (Macrocystis pyrifera P11B4 male)
ATGTTTGTGTTTGTGACGGTGGTTGGAGGTTTGGTGGAGAAAAGCGCAGC
GTTGGATTTTCGGGTGAACTTTTCTCACGTGCTGACTCCTTTGCCGCACT
TTTGGAACTCTGCGGGGTACTGTCCTGGCGCTCCGCACGAGACGGAGTCG
ATTCCGTACTCTTTGTCGGAGGACATGCACCAGAATCTGCTGTACATCGG
CTCAGTGCCGCACACGGCAGATGCGTGGGCGTTGGAGCCTAGCATGTTTG
TGTTTGTGACGGTGGTTGGAGGTTTGGTGGAGAAAAGCGCAGCGTTGGAT
TTTCGGGTGAACTTTTCTCACGTGCTGACTCCTTTGCCGCACTTTTGGAA
CTCTGCGGGGTACTGTCCTGGCGCTCCGCACGAGACGGAGTCGATTCCGT
ACTCTTTGTCGGAGGACATGCACCAGAATCTGCTGTACATCGGCTCAGTG
CCGCACACGGCAGATGCGTGGGCGTTGGAGCCTAGCGTGCGCATCCACTG
GCTGTTCGATTTGGTGAAGCCGATTTCGGGACTGGGCCAATGTGGGGAGG
ATGAGGTGGTTTGCGTGCCTGAGATGGGAGAGAACGGCGCGTTCAATTTT
TCCGCACTGGACACGCTGCTGGACCGGCTCTCTGGGGCGAAGCTGCGTCC
GGGGTTCGAGCTGATGGGTTTGGCTGGGGGAGGGGCCATTTGGACCGATT
TCGACAATGCCACACAAGTGCAGTGGTGGGCTGCGTTTGTGAATGTGCGC
ATCCACTGGCTGTTCGATTTGGTGAAGCCGATTTCGGGACTGGGCCAATG
TGGGGAGGATGAGGTGGTTTGCGTGCCTGAGATGGGAGAGAACGGCGCGT
TCAATTTTTCCGCACTGGACACGCTGCTGGACCGGCTCTCTGGGGCGAAG
CTGCGTCCGGGGTTCGAGCTGATGGGTTTGGCTGGGGGAGGGGCCATTTG
GACCGATTTCGACAATGCCACACAAGTGCAGTGGTGGGCTGCGTTTGTGA
AT
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