mRNA_M-pyrifera_M_contig81048.18957.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81048.18957.1
Unique NamemRNA_M-pyrifera_M_contig81048.18957.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81048.18957.1 vs. uniprot
Match: A0A6H5KW21_9PHAE (Exportin-T n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW21_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.460e-38
Identity = 90/178 (50.56%), Postives = 101/178 (56.74%), Query Frame = 1 
Query:    1 VTQLLNQLTIEYGPKSAQLLDGALLPFIRRTHDLMPGPGG--------------------------------------------------------------EAE-LLAHEVAERAGIRKLYLSLLQHLSSNGLAGVLASPTNGACLDGVLRSVLAGISGDEDASTKKTCFYIFSLLL 345
            V Q+LNQLTIEYGPKSAQLLDGAL+PFIRRT+ L PG G                                                               EA+ LLAHEVAERAG +KL  S++QH+SSNGLAGVL+SPTN   LDGVLRSV+ G+SG EDASTKKTC YIFSLLL
Sbjct:  269 VAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGVLRSVVDGLSGAEDASTKKTCLYIFSLLL 446
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BLAST of mRNA_M-pyrifera_M_contig81048.18957.1 vs. uniprot
Match: D7FNT8_ECTSI (Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT8_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 4.360e-38
Identity = 90/177 (50.85%), Postives = 101/177 (57.06%), Query Frame = 1 
Query:    1 VTQLLNQLTIEYGPKSAQLLDGALLPFIRRTHDLMPGPGG-------------------------------------------------------------EAE-LLAHEVAERAGIRKLYLSLLQHLSSNGLAGVLASPTNGACLDGVLRSVLAGISGDEDASTKKTCFYIFSLLL 345
            V Q+LNQLTIEYGPKSAQLLDGAL+PFIRRT+ L PG G                                                              EA+ LLAHEVAERAG +KL  S++QH+SSNGLAGVL+SPTN   LDGVLRSV+ G+SG EDASTKKTC YIFSLLL
Sbjct:  801 VAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWPNGTTAELPXXXXXXXXXXXXXXXXXXXGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGVLRSVVDGLSGAEDASTKKTCLYIFSLLL 977
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BLAST of mRNA_M-pyrifera_M_contig81048.18957.1 vs. uniprot
Match: B7G7L1_PHATC (Exportin-T n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7L1_PHATC)

HSP 1 Score: 73.9 bits (180), Expect = 5.330e-13
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:    1 VTQLLNQLTIEYGPKSAQLLDGALLPFIRRTHDLMPGP---GGEAELLAHEVAERAGIRKLYLSLLQHLSSNGLAGVLASPTNGACLDGVLRSVLAGISGDEDASTKKTCFYIF 333
            V+Q+ NQL I++   S  ++DGAL+PF+R+ + L+P      G +++  H   E+  I+KL   +LQH+ ++  + VL SPTN   L+ VLRS+  G     D   +KTC   F
Sbjct:  799 VSQIFNQLCIKFKEASVPVIDGALMPFLRKCYALVPATDDVAGTSDVPPHLRTEQLSIQKLTFVVLQHIVTHNASAVLMSPTNVGNLESVLRSMSDGAVYVTDPIVQKTCVKFF 912
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81048.18957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW21_9PHAE2.460e-3850.56Exportin-T n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D7FNT8_ECTSI4.360e-3850.85Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
B7G7L1_PHATC5.330e-1336.84Exportin-T n=1 Tax=Phaeodactylum tricornutum (stra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81048contigM-pyrifera_M_contig81048:237..773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue2.9e-33
Seed eggNOG ortholog2880.D7FNT8
KEGG koko:K14288
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000049,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005049,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0008104,GO:0008150,GO:0008536,GO:0009653,GO:0009791,GO:0009888,GO:0009908,GO:0009933,GO:0010014,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016363,GO:0017016,GO:0019899,GO:0022414,GO:0031267,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034399,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048367,GO:0048507,GO:0048532,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0051020,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0061458,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071528,GO:0071702,GO:0071705,GO:0090567,GO:0097064,GO:0097159,GO:0140104,GO:0140142,GO:1901363
EggNOG free text desc.tRNA re-export from nucleus
EggNOG OGsKOG2021@1,KOG2021@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.8985155-CDS-M-pyrifera_M_contig81048:236..4701622816715.8985155-CDS-M-pyrifera_M_contig81048:236..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81048 237..470 -
1692278136.751407-CDS-M-pyrifera_M_contig81048:236..4701692278136.751407-CDS-M-pyrifera_M_contig81048:236..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81048 237..470 -
1622816715.9155958-CDS-M-pyrifera_M_contig81048:662..7731622816715.9155958-CDS-M-pyrifera_M_contig81048:662..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81048 663..773 -
1692278136.7646992-CDS-M-pyrifera_M_contig81048:662..7731692278136.7646992-CDS-M-pyrifera_M_contig81048:662..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81048 663..773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81048.18957.1prot_M-pyrifera_M_contig81048.18957.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81048 237..773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81048.18957.1

>prot_M-pyrifera_M_contig81048.18957.1 ID=prot_M-pyrifera_M_contig81048.18957.1|Name=mRNA_M-pyrifera_M_contig81048.18957.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
VTQLLNQLTIEYGPKSAQLLDGALLPFIRRTHDLMPGPGGEAELLAHEVA
ERAGIRKLYLSLLQHLSSNGLAGVLASPTNGACLDGVLRSVLAGISGDED
ASTKKTCFYIFSLLL
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mRNA from alignment at M-pyrifera_M_contig81048:237..773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81048.18957.1 ID=mRNA_M-pyrifera_M_contig81048.18957.1|Name=mRNA_M-pyrifera_M_contig81048.18957.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig81048:237..773- (Macrocystis pyrifera P11B4 male)
GTAACCCAGCTCTTGAACCAGCTGACGATCGAGTACGGACCGAAATCAGC
GCAGCTCCTCGACGGCGCCCTCCTCCCCTTCATCCGGCGAACACACGACC
TCATGCCGGGGGTGGGCTCAACCACCGCCACCGCCGCTGCCGCCGCGACA
GCCGCCTCCTCAAGCCCCCATGGGACTGGCCAAGCCTTGGGAGAAGGCCC
AGGCCCAGGGGCCAACGGGAGAGAATGGCCGGGGACGGCAAACGGGAGTT
CCAAACCGTCGGCATTGTATTCGGGGGGAGGGAGCGCGTCGGCGGCGGTA
GAGCCGGGGGGCGAGGCGGAGCTGCTGGCGCACGAGGTGGCCGAGCGAGC
GGGCATCCGGAAGCTGTACCTGAGCCTTTTGCAGCACTTGTCCTCGAACG
GCCTGGCAGGGGTGCTGGCCAGCCCGACGAACGGCGCGTGCCTGGACGGC
GTTTTGCGCTCGGTGCTCGCGGGGATATCGGGGGACGAAGACGCCTCAAC
GAAGAAAACGTGTTTTTACATTTTTTCGCTCCTGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81048:237..773-

>mRNA_M-pyrifera_M_contig81048.18957.1 ID=mRNA_M-pyrifera_M_contig81048.18957.1|Name=mRNA_M-pyrifera_M_contig81048.18957.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig81048:237..773- (Macrocystis pyrifera P11B4 male)
GTAACCCAGCTCTTGAACCAGCTGACGATCGAGTACGGACCGAAATCAGC
GCAGCTCCTCGACGGCGCCCTCCTCCCCTTCATCCGGCGAACACACGACC
TCATGCCGGGGGTAACCCAGCTCTTGAACCAGCTGACGATCGAGTACGGA
CCGAAATCAGCGCAGCTCCTCGACGGCGCCCTCCTCCCCTTCATCCGGCG
AACACACGACCTCATGCCGGGGCCGGGGGGCGAGGCGGAGCTGCTGGCGC
ACGAGGTGGCCGAGCGAGCGGGCATCCGGAAGCTGTACCTGAGCCTTTTG
CAGCACTTGTCCTCGAACGGCCTGGCAGGGGTGCTGGCCAGCCCGACGAA
CGGCGCGTGCCTGGACGGCGTTTTGCGCTCGGTGCTCGCGGGGATATCGG
GGGACGAAGACGCCTCAACGAAGAAAACGTGTTTTTACATTTTTTCGCTC
CTGTTGCCGGGGGGCGAGGCGGAGCTGCTGGCGCACGAGGTGGCCGAGCG
AGCGGGCATCCGGAAGCTGTACCTGAGCCTTTTGCAGCACTTGTCCTCGA
ACGGCCTGGCAGGGGTGCTGGCCAGCCCGACGAACGGCGCGTGCCTGGAC
GGCGTTTTGCGCTCGGTGCTCGCGGGGATATCGGGGGACGAAGACGCCTC
AACGAAGAAAACGTGTTTTTACATTTTTTCGCTCCTGTTG
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