mRNA_M-pyrifera_M_contig81030.18956.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81030.18956.1
Unique NamemRNA_M-pyrifera_M_contig81030.18956.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Match: V4B6A9_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B6A9_LOTGI)

HSP 1 Score: 137 bits (344), Expect = 2.330e-34
Identity = 83/252 (32.94%), Postives = 130/252 (51.59%), Query Frame = 1
Query:   52 VACGQHTCAAVLRDGKGLYTWGKGAHGVLGHGDEKNCEEPKMVD-VGGKNVTGVSLGHLCSCCWTDEGDLFVWGSTEHGVKKSKPNATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYKGMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAFGDPSDPPSHVVKVCCGGIHCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRYLFRTVLPTKVVDIPRKTSKAVFLAAAYYVTGAV 804
            V+CG +       DG   Y++G G  GVLGHG  ++   PK+++ + G  +T +  G+  S   TDEG +++WG    G      +    + P +     V     S S G H+   L + ++G +++WG  YKG LG           HGD  ++       A+ R     S     ++ VC GGIH  A++K+G +FTWGCGSDGR+G   +  HRYL+R+ +P +V DI +   KA+ ++ +YY T A+
Sbjct:  147 VSCGFNYTLMWSLDGT-AYSFGSGHFGVLGHGSVEDVPLPKIIEKLMGHKITTMCAGYNHSGAVTDEGKIYMWGKGSDGALGFGKDVHNQMEPKELIVRDVRFTVLSCSVGEHHGHTLASTANGFVYSWGDGYKGKLG-----------HGDQCSI-------AEPRQINSHSFDNESIIDVCAGGIHSCALSKEGHVFTWGCGSDGRLGHPESIGHRYLYRSDVPKRVEDISKY--KALGISCSYYHTAAL 377          
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Match: A0A1X7UZJ8_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UZJ8_AMPQE)

HSP 1 Score: 135 bits (340), Expect = 1.010e-33
Identity = 89/264 (33.71%), Postives = 134/264 (50.76%), Query Frame = 1
Query:   16 PTEVSLPGPAAFVACGQHTCAAVLRDGKGLYTWGKGAHGVLGHGDEKNCEEPKMVD-VGGKNVTGVSLGHLCSCCWTDEGDLFVWGSTEHGVKKSKPNATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYKGMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAFGDPSDPPSHVVKVCCGGIHCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRYLFRTVLPTKVVDIPRKTSKAVFLAAAYYVTGAV 804
            P +VS     + V+CG +   A+ +D + +Y+WG G  GVLGHGD ++   P  ++ +    +T +  G+  +   ++EG L+  G    G      + T  LVP       + V D S S G H+S  L+   DG++++ G  YK     CK+G      HG+D +L    PT+ D   F         +  V CGGIH  AM     +FTWGCGSDGR+G   A+ HRYLF + +P +V  +  K  K   ++A+YY T A+
Sbjct:  142 PIQVSCKVLFSEVSCGFNYTIAISKDSRSVYSWGSGRFGVLGHGDREDRFIPTQIESLSSVKITRIHAGYCHAGFMSNEGLLYTSGKGSDGALGHGGDKTDQLVP-RIVESLINVADVSCSAGEHHSHTLIVTGDGNVFSCGDGYK-----CKLG------HGNDRSL--DTPTRIDPAHFNG-----CKITSVACGGIHSVAMATDEAVFTWGCGSDGRLGHPEAKGHRYLFLSSVPRQVEGL--KGWKPFMISASYYHTAAL 384          
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Match: UPI00201FA11D (ultraviolet-B receptor UVR8-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201FA11D)

HSP 1 Score: 135 bits (340), Expect = 1.010e-33
Identity = 91/271 (33.58%), Postives = 133/271 (49.08%), Query Frame = 1
Query:   10 PTPTEVSLPGPAAFVACGQHTCAAVLRDGKGLYTWGKGAHGVLGHGDEKNCEEPKMVDV-GGKNVTGVSLGHLCSCCWTDEGDLFVWGSTEHGVKKSKP-----NATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYKGMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAFGDPSDPPSHVVKVCCGGIHCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRYLFRTVLPTKVVDIPRKTSKAVFLAAAYYVTGAV 804
            P P     PG  + V+CG +   A    G+  ++WG G HGVLGHG E++   P+ ++V   K V  +  G+      T +G ++++G    G    K      N  PT V      +GV VV+ S S G H+   L    DG +++WG  YKG LG            GD +  +   PTK    +F + +     +  V  GGIH SA++  G +FTWGCGSDGR+G    + HRYLFR+ +P K V+  +    A  +  +YY T A+
Sbjct:  134 PIPVPSFTPGRLSGVSCGHNYTLAWTNSGQ-AFSWGCGRHGVLGHGTEEDSPTPREIEVLSDKGVAFMDAGYAHCGAVTKDGAVYMFGKGADGALGLKEKTLGNNLVPTKVNSI---KGVDVVEISCSVGEHHGHTLAVTRDGQVYSWGDGYKGKLGT-----------GDQEPRFE--PTKIPPSSFQNEA-----IAHVGSGGIHSSAVSVSGRVFTWGCGSDGRLGHPEGKGHRYLFRSDVP-KQVEFFKPNQHAEMVKCSYYHTVAL 381          
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Match: A0A8J1UM32_OWEFU (Ofus.G141769 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UM32_OWEFU)

HSP 1 Score: 133 bits (335), Expect = 4.470e-33
Identity = 93/267 (34.83%), Postives = 137/267 (51.31%), Query Frame = 1
Query:   25 VSLPGPAAFVACGQHTCAAVLRDGKGLYTWGKGAHGVLGHGDEKNCEEP-KMVDVGGKNVTGVSLGHLCSCCWTDEGDLFVWGST---EHGVKKS--KPNATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYKGMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAF-GDPSDPPSHVVKVCCGGIHCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRYLFRTVLPTKVVDIPRKTSKAVFLAAAYYVTGAV 804
            + +PG    V+CG +       +G  LY+WG G HGVLGHGD ++   P K+ ++    V   + G       TD GD++++G     E G+  +  K  A PT VP        G+ + S + G ++   L     G ++ WG  YKG LG            G+ D+  +  P K  +  F GD       ++ V  GGIH +A++K+G +FTWGCGSDGR+G   AE HRYLFR+ +P +VVDI +   KA+ +  +YY T  V
Sbjct:  135 IDIPGKVIGVSCGNNFTLVWTENGS-LYSWGSGRHGVLGHGDFRDKITPTKVEELKDIKVVSGNAGFAHCGVVTDCGDVYMFGKGFDGELGLGSNFLKDVAVPTKVPSLG-----GIKELSCNVGENHGHTLAISLQGDVYTWGDGYKGKLGT-----------GNQDS--YNTPQKIPRDNFSGD------EIMHVSAGGIHSAAVSKEGRVFTWGCGSDGRLGHPEAEGHRYLFRSDIP-RVVDIIQDKGKALGVTCSYYHTACV 375          
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Match: A0A2T7NZ17_POMCA (Uncharacterized protein n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NZ17_POMCA)

HSP 1 Score: 127 bits (318), Expect = 2.350e-30
Identity = 87/259 (33.59%), Postives = 124/259 (47.88%), Query Frame = 1
Query:   52 VACGQHTCAAVLRDGKGLYTWGKGAHGVLGHGDEKNCEEPKMVDVGGKNVTGV---SLGHLCSCCWTDEGDLFVWGSTEHGV-----KKSKPNATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYKGMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAFGDPSDPPSHVVKVCCGGIHCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRYLFRTVLPTKVVDIPRKTSKAVFLAAAYYVTGAV 804
            VACG +   A L  G  L +WG G HGVLGHG   +   P+ V+     +T +   + G+  S   T +G LF+ G  + G      KK      P  V    + + V VV  S S G H+   L     G ++AWG  YKG LG+           G  ++L+  +   A++           HV +V  GGIH +A   +G IFTWGCGSDGR+G    + HRYLFR+ +P +V  +  K  +   +  +YY T A+
Sbjct:  174 VACGYNYTLAWLSTGVVL-SWGSGHHGVLGHGFVGDIASPRPVEA--LQLTKIMDGAAGYSHSAFVTSDGCLFMCGKGKDGALGLGNKKLADVTCPQQVS---FADNVQVVKVSCSVGEHHGHTLALTRRGEVYAWGDGYKGKLGM-----------GSQESLYTPVQIAAEKFDM-------EHVTEVSAGGIHSAAATAEGSIFTWGCGSDGRLGHPEGQGHRYLFRSDVPRRVEALAAKGRRLAMVNCSYYHTAAI 408          
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Match: UPI0003593981 (ultraviolet-B receptor UVR8 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003593981)

HSP 1 Score: 125 bits (314), Expect = 4.770e-30
Identity = 85/254 (33.46%), Postives = 123/254 (48.43%), Query Frame = 1
Query:   46 AFVACGQHTCAAVLRDGKGLYTWGKGAHGVLGHGDEKNCEEPKMVD-VGGKNVTGVSLGHLCSCCWTDEGDLFVWGSTEHGVKKSKPNATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYKGMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAFGDPSDPPSHVVKVCCGGIHCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRYLFRTVLPTKVVDIPRKTSKAVFLAAAYYVTGAV 804
            A V+CG +   A   +G+ LY+WG+G +GVLG G + +   P+ V+ +  + V  V  G+      T+ G L++ G    G      +     +       G  V   S S+G H+   L     GS+ AWG  YKG LGL   G+E+R+T           P       F +       V  +  GGIH +A    GE+FTWGCGSDGR+G    + HRYLFR+ +P KV  +P+  +  V ++ AYY   AV
Sbjct:  137 AGVSCGHNYTYAWTVEGQ-LYSWGRGQNGVLGLGSDDDQRLPQHVETLKEEKVATVGAGNSHCGIVTESGLLYMTGKGSDGALGFGHSHLGNALLPKRCETGTEVKAVSCSKGEHHGHTLALTVSGSVLAWGDGYKGKLGL--GGQESRYT-----------PAVIPPELFNNQP-----VTSISAGGIHSAAATASGEVFTWGCGSDGRLGHPEGQGHRYLFRSDIPKKVEGLPKAGAGKVTVSCAYYHCAAV 371          
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Match: UPI001EE5A157 (ultraviolet-B receptor UVR8-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5A157)

HSP 1 Score: 125 bits (313), Expect = 8.480e-30
Identity = 86/270 (31.85%), Postives = 130/270 (48.15%), Query Frame = 1
Query:   10 PTPTEVSLPGPAAFVACGQHTCAAVLRDGKGLYTWGKGAHGVLGHGDEKNCEEPKMVD-VGGKNVTGVSLGHLCSCCWTDEGDLFVWGSTEHGV----KKSKPNATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYKGMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAFGDPSDPPSHVVKVCCGGIHCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRYLFRTVLPTKVVDIPRKTSKAVFLAAAYYVTGAV 804
            P P     P     V+CG +   A    G+  ++WG G HGVLGHG E++ + PK ++ +  K+V  +  G+      T +G ++++G    G     +K+  N     V       GV VV+ S S G H+   L    D  +++WG  YKG LG            GD +  +   PTK    +F + +     +  V  GGIH SA++  G +FTWGCGSDGR+G    + HRYLFR+ +P K V+  +       +  +YY T A+
Sbjct:  134 PIPVPNFTPDRLIGVSCGHNYTLAWTETGR-AFSWGCGRHGVLGHGTEEDSQTPKEIEALSVKDVVFMDAGYAHCGAVTKDGAVYMFGKGADGALGLGEKTLNNKLVPAVVNSL--SGVDVVEISCSVGEHHGHTLAVTRDAEVFSWGDGYKGKLGT-----------GDQEPRFE--PTKVLPSSFQNEA-----IAHVSSGGIHSSAVSVSGRVFTWGCGSDGRLGHPEGKGHRYLFRSDVP-KPVEFFKPNQHVKMVKCSYYHTVAL 381          
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Match: UPI001E1DB7D9 (probable E3 ubiquitin-protein ligase HERC3 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB7D9)

HSP 1 Score: 123 bits (308), Expect = 4.420e-29
Identity = 83/263 (31.56%), Postives = 127/263 (48.29%), Query Frame = 1
Query:   52 VACGQHTCAAVLRDGKGLYTWGKGAHGVLGHGDEKNCEEPKMVDVGGKN---VTGVSLGHLCSCCWTDEGDLFVWGSTEHGV---------KKSKPNATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYKGMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAFGDPSDPPSHVVKVCCGGIHCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRYLFRTVLPTKVVDIPRKTSKAVFLAAAYYVTGAV 804
            +ACG +       DG+  Y+WG G HGVLGH D  +   P ++     N   V  +S G   S     +G L+++G  E G          + ++P    TL       + V + + S + G  +   L   + G ++A+G  YKG LGL           GD ++  H  P +  +  F        H+  V  GGIH +A++ +G +FTWGCGSDGR+G    + HRYLFR+ +P +V  +  K  KAV ++ +YY T A+
Sbjct:  150 IACGNNFTLLWTSDGE-AYSWGCGRHGVLGHEDGSDKNTPTIISSFKNNSVKVIHMSAGFAHSGAVNSDGRLYMFGKGEDGALGLGPSPPKQVNEPRLVSTL-------QDVHITELSCNVGEKHGHTLCVSNQGQVFAFGDGYKGKLGL-----------GDQNS--HFAPAEIPKENFNG-----EHINHVSAGGIHSAAVSAEGHVFTWGCGSDGRLGHPEGKGHRYLFRSDVPREVEGLS-KVGKAVSVSCSYYHTVAL 385          
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Match: A0A7M6DP20_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DP20_9CNID)

HSP 1 Score: 118 bits (295), Expect = 2.280e-27
Identity = 78/233 (33.48%), Postives = 116/233 (49.79%), Query Frame = 1
Query:  112 WGKGAHGVLGHGDEKNCEEPKMVD-VGGKNVTGVSLGHLCSCCWTDEGDLFVWGSTEHG-VKKSKPNATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYKGMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAFGDPSDPPSHVVKVCCGGIHCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRYLFRTVLPTKVVDIPRKTSKAVFLAAAYYVTGAV 804
            WG G +GVLGHGD    ++PK+++ + G  +  +S G+       ++G LF WG    G +     + +  LVP    G       +S S G ++   LV    G+++  G  YKG LGL           GD ++  H    +    +FG  +     +++V  GGI  +A++ KG +FTWGCGSDGR+G   AE HRYLFR+  P  V  I     K V  +A+YY   A+
Sbjct:  156 WGSGNNGVLGHGDMAQQKKPKIIEALNGHKIVDMSAGYCHCTAICEDGKLFTWGKAAFGSLGNGSTSKSDVLVPQLVTGFQ-NAKQSSCSMGENHGHTLVVNKSGTVFVTGDGYKGKLGL-----------GDQES--HTTFQEIPGESFGGEA-----IMQVMAGGISSAALSSKGHVFTWGCGSDGRLGHPEAEGHRYLFRSDQPRIVESIQDMNCKKV--SASYYHMAAL 367          
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Match: UPI000644A0E6 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A0E6)

HSP 1 Score: 104 bits (259), Expect = 1.750e-21
Identity = 74/212 (34.91%), Postives = 98/212 (46.23%), Query Frame = 1
Query:   76 AAVLRDGKGLYTWGKGAHGVLGHGDEKNCEEPKMVD-VGGKNVTGVSLGHLCSCCWTDEGDLFVWGSTEHGVKKSKPNATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYKGMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAFGDPSDPPSHVVKVCCGGI-HCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRY 705
            +AV+     LYTWG+G HG LGHGD +N   PK VD + G  +T VSLG   +   T  G LF WG  E G        T  + P          V   T+ G H    +V C DGS++AWG    G LG+           G+ D     LP K  Q        P    + V  GG  H  A++K G +++WGCG+ GR+G    E H++
Sbjct:  252 SAVIDSAGTLYTWGRGDHGRLGHGDTENVLAPKRVDALYGHFITSVSLGGGHTLALTKSGQLFTWGRGESGQLGHGSFQTQQMSPKQVQAMTDQTVTYITAGGYHS---IVQCVDGSVYAWGMGDYGCLGI-----------GNSDGGNINLPHKITQL-------PKDDAIVVLSGGFQHNVALSKTGRVYSWGCGNGGRLGTLN-EQHQF 441          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81030.18956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V4B6A9_LOTGI2.330e-3432.94Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
A0A1X7UZJ8_AMPQE1.010e-3333.71Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI00201FA11D1.010e-3333.58ultraviolet-B receptor UVR8-like n=1 Tax=Haliotis ... [more]
A0A8J1UM32_OWEFU4.470e-3334.83Ofus.G141769 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A2T7NZ17_POMCA2.350e-3033.59Uncharacterized protein n=3 Tax=Pomacea canalicula... [more]
UPI00035939814.770e-3033.46ultraviolet-B receptor UVR8 n=1 Tax=Aplysia califo... [more]
UPI001EE5A1578.480e-3031.85ultraviolet-B receptor UVR8-like n=1 Tax=Haliotis ... [more]
UPI001E1DB7D94.420e-2931.56probable E3 ubiquitin-protein ligase HERC3 n=1 Tax... [more]
A0A7M6DP20_9CNID2.280e-2733.48Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
UPI000644A0E61.750e-2134.91hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81030contigM-pyrifera_M_contig81030:11..886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score137.1
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog400682.PAC_15720487
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Regulator of chromosome condensation (RCC1) repeat
EggNOG OGs3A2EW@33154,3BQME@33208,COG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons2
Model size813
Cds size813
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.8446262-CDS-M-pyrifera_M_contig81030:10..2981622816715.8446262-CDS-M-pyrifera_M_contig81030:10..298Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81030 11..298 +
1692278136.7249622-CDS-M-pyrifera_M_contig81030:10..2981692278136.7249622-CDS-M-pyrifera_M_contig81030:10..298Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81030 11..298 +
1622816715.8601804-CDS-M-pyrifera_M_contig81030:361..8861622816715.8601804-CDS-M-pyrifera_M_contig81030:361..886Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81030 362..886 +
1692278136.7374575-CDS-M-pyrifera_M_contig81030:361..8861692278136.7374575-CDS-M-pyrifera_M_contig81030:361..886Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81030 362..886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81030.18956.1prot_M-pyrifera_M_contig81030.18956.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81030 11..886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81030.18956.1

>prot_M-pyrifera_M_contig81030.18956.1 ID=prot_M-pyrifera_M_contig81030.18956.1|Name=mRNA_M-pyrifera_M_contig81030.18956.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=271bp
MAAPTPTEVSLPGPAAFVACGQHTCAAVLRDGKGLYTWGKGAHGVLGHGD
EKNCEEPKMVDVGGKNVTGVSLGHLCSCCWTDEGDLFVWGSTEHGVKKSK
PNATPTLVPGDWWGEGVGVVDASTSRGLHYSCILVACSDGSMWAWGSNYK
GMLGLCKVGEEARWTHGDDDTLWHLLPTKADQRAFGDPSDPPSHVVKVCC
GGIHCSAMNKKGEIFTWGCGSDGRMGLEGAEDHRYLFRTVLPTKVVDIPR
KTSKAVFLAAAYYVTGAVYV*
back to top

mRNA from alignment at M-pyrifera_M_contig81030:11..886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81030.18956.1 ID=mRNA_M-pyrifera_M_contig81030.18956.1|Name=mRNA_M-pyrifera_M_contig81030.18956.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig81030:11..886+ (Macrocystis pyrifera P11B4 male)
ATGGCCGCGCCAACACCAACCGAAGTCTCTCTTCCTGGCCCAGCCGCGTT TGTTGCATGCGGGCAACACACGTGTGCTGCTGTGCTACGCGATGGAAAAG GGTTGTATACTTGGGGAAAAGGTGCCCATGGGGTATTGGGGCATGGAGAC GAGAAAAACTGCGAAGAACCGAAAATGGTTGACGTTGGGGGGAAAAACGT GACTGGCGTAAGCCTTGGACATTTGTGTAGCTGTTGCTGGACGGATGAAG GGGACTTGTTTGTGTGGGGAAGTACGGAGCACGGAGTTGTACCCAAAGTT GGGTGCGAGTTTCCAACGCCACCATCATCCACCGCCGCTCCAGCCACCAA GAAGAAATCAAAGCCAAACGCAACCCCAACCCTTGTCCCAGGGGATTGGT GGGGGGAAGGGGTTGGGGTGGTGGATGCTTCGACGAGTAGAGGATTGCAT TATTCGTGCATCTTGGTCGCTTGCTCTGATGGGAGTATGTGGGCTTGGGG AAGCAACTACAAAGGAATGCTTGGATTGTGCAAGGTAGGAGAGGAAGCAC GGTGGACACATGGAGATGATGATACACTGTGGCATCTCCTTCCAACAAAA GCTGACCAACGTGCATTTGGTGATCCATCCGACCCTCCTTCCCACGTTGT GAAAGTGTGCTGTGGTGGAATCCATTGTTCAGCAATGAACAAGAAAGGAG AAATCTTTACTTGGGGATGTGGCAGCGATGGACGAATGGGCCTCGAAGGT GCAGAAGATCATCGCTACCTTTTCCGCACAGTCCTGCCAACAAAAGTTGT GGACATTCCCCGCAAGACTTCAAAGGCAGTGTTTCTTGCAGCTGCCTATT ACGTCACTGGGGCTGTGTATGTGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81030:11..886+

>mRNA_M-pyrifera_M_contig81030.18956.1 ID=mRNA_M-pyrifera_M_contig81030.18956.1|Name=mRNA_M-pyrifera_M_contig81030.18956.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1626bp|location=Sequence derived from alignment at M-pyrifera_M_contig81030:11..886+ (Macrocystis pyrifera P11B4 male)
ATGGCCGCGCCAACACCAACCGAAGTCTCTCTTCCTGGCCCAGCCGCGTT
TGTTGCATGCGGGCAACACACGTGTGCTGCTGTGCTACGCGATGGAAAAG
GGTTGTATACTTGGGGAAAAGGTGCCCATGGGGTATTGGGGCATGGAGAC
GAGAAAAACTGCGAAGAACCGAAAATGGTTGACGTTGGGGGGAAAAACGT
GACTGGCGTAAGCCTTGGACATTTGTGTAGCTGTTGCTGGACGGATGAAG
GGGACTTGTTTGTGTGGGGAAGTACGGAGCACGGAGTTATGGCCGCGCCA
ACACCAACCGAAGTCTCTCTTCCTGGCCCAGCCGCGTTTGTTGCATGCGG
GCAACACACGTGTGCTGCTGTGCTACGCGATGGAAAAGGGTTGTATACTT
GGGGAAAAGGTGCCCATGGGGTATTGGGGCATGGAGACGAGAAAAACTGC
GAAGAACCGAAAATGGTTGACGTTGGGGGGAAAAACGTGACTGGCGTAAG
CCTTGGACATTTGTGTAGCTGTTGCTGGACGGATGAAGGGGACTTGTTTG
TGTGGGGAAGTACGGAGCACGGAGTTAAGAAATCAAAGCCAAACGCAACC
CCAACCCTTGTCCCAGGGGATTGGTGGGGGGAAGGGGTTGGGGTGGTGGA
TGCTTCGACGAGTAGAGGATTGCATTATTCGTGCATCTTGGTCGCTTGCT
CTGATGGGAGTATGTGGGCTTGGGGAAGCAACTACAAAGGAATGCTTGGA
TTGTGCAAGGTAGGAGAGGAAGCACGGTGGACACATGGAGATGATGATAC
ACTGTGGCATCTCCTTCCAACAAAAGCTGACCAACGTGCATTTGGTGATC
CATCCGACCCTCCTTCCCACGTTGTGAAAGTGTGCTGTGGTGGAATCCAT
TGTTCAGCAATGAACAAGAAAGGAGAAATCTTTACTTGGGGATGTGGCAG
CGATGGACGAATGGGCCTCGAAGGTGCAGAAGATCATCGCTACCTTTTCC
GCACAGTCCTGCCAACAAAAGTTGTGGACATTCCCCGCAAGACTTCAAAG
GCAGTGTTTCTTGCAGCTGCCTATTACGTCACTGGGGCTGTGTATGTGTG
AAAGAAATCAAAGCCAAACGCAACCCCAACCCTTGTCCCAGGGGATTGGT
GGGGGGAAGGGGTTGGGGTGGTGGATGCTTCGACGAGTAGAGGATTGCAT
TATTCGTGCATCTTGGTCGCTTGCTCTGATGGGAGTATGTGGGCTTGGGG
AAGCAACTACAAAGGAATGCTTGGATTGTGCAAGGTAGGAGAGGAAGCAC
GGTGGACACATGGAGATGATGATACACTGTGGCATCTCCTTCCAACAAAA
GCTGACCAACGTGCATTTGGTGATCCATCCGACCCTCCTTCCCACGTTGT
GAAAGTGTGCTGTGGTGGAATCCATTGTTCAGCAATGAACAAGAAAGGAG
AAATCTTTACTTGGGGATGTGGCAGCGATGGACGAATGGGCCTCGAAGGT
GCAGAAGATCATCGCTACCTTTTCCGCACAGTCCTGCCAACAAAAGTTGT
GGACATTCCCCGCAAGACTTCAAAGGCAGTGTTTCTTGCAGCTGCCTATT
ACGTCACTGGGGCTGTGTATGTGTGA
back to top