mRNA_M-pyrifera_M_contig80971.18939.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Match: A0A5A8EHW5_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHW5_CAFRO) HSP 1 Score: 165 bits (418), Expect = 1.510e-42 Identity = 109/263 (41.44%), Postives = 140/263 (53.23%), Query Frame = 1
Query: 37 HDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAXXXXXXXXXXXXXXXXXXELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSNRGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLEGSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVAELRRKLEELSQAQNMAHAAAFAAVQ 825
HDA VA W K+RE+YD AE+ VL R LR L + V++ L+ LED + A+ M R +V W +V GLE R A ELG ELR + L + H +P +ER V ++AADVN L L NR D + AKL RAA RWE A Q+WR +RH DA++R L V+PPAR A A L Q +HE+ LP R LA+LRPP LT VAE+R +LE + A+ A A F +Q
Sbjct: 136 HDAAVAAWLVKQREFYDQAEDDVLEAGRALRQQLAELDDEVETRLAALEDPTQAIAMCRQDVTACWAAVEGLEERRVARAEDFKAFLTELENRRCEELGAELRALTSRLSSVGHAQPGAVERIVAKEAADVNALALKNRTDAADIGAKLLATAALSRAANLRRWEAAQQAWRVLRHDDAMERVRERLNSPEFVDPPARVQAAARLREAQGRVHEQVLLPALRRLAALRPPQLTEEAVAEVRAQLEAAADAEAAAAADGFRGIQ 398
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Match: A0A812WHB4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WHB4_9DINO) HSP 1 Score: 144 bits (364), Expect = 1.230e-35 Identity = 108/303 (35.64%), Postives = 141/303 (46.53%), Query Frame = 1
Query: 37 HDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAXXXXXXXXXXXXXXXXXX----------------------------------------ELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSNRGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLEGSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVAELRRKLEELSQAQNMAHAAAFAAVQ 825
HDA VA W K+RE+YD AE+ VL R LR L + V++ L+ LED ++A+ M R +V W +V GLE R A +LG ELR + L + H +P +ER V ++AADVN L L NR D + AKL RAA RWE A Q+WR +RH DA++R L V+PPAR A A L Q +HE+ LP R LA+LRPP LT VAE+R +LE + A+ A A F +Q
Sbjct: 189 HDAAVAAWLVKQREFYDQAEDDVLEAGRALRQQLAELDDEVETRLAALEDPTHAIAMCRQDVTACWAAVEGLEERRVARAEDFKAFLTELENRRCEHPAPLAALLASCAPGRPRFQPXXXXXXXASSLLRLWPPRGKLGAELRALTSRLSSVGHAQPGAVERIVAKEAADVNALALKNRTDAADIGAKLLATAALSRAANLRRWEAAQQAWRVLRHDDAMERVRERLNSPEFVDPPARVQAAARLREAQGRVHEQVLLPALRRLAALRPPQLTEEAVAEVRAQLEAAADAEAAAAADGFRGIQ 491
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Match: W4GMB2_9STRA (Uncharacterized protein n=16 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMB2_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 5.070e-8 Identity = 64/266 (24.06%), Postives = 117/266 (43.98%), Query Frame = 1
Query: 16 ARDRRRRHDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAXXXXXXXXXXXXXXXXXXELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSNRGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLEGSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVAELRRKLEELSQAQNMAHAAAF 813
A+ RR RH A +++ + + D E +L S ++ L V+A + + L D ++ A V W + L + R G EL+ + + A+ PP +ER +E++A ++N ++++NR LV+++ K+ V + + WE + WR + H A+ A LE +PP L L A+Q ++H +RL L +L L L+ +V + L ++ + + +AA F
Sbjct: 113 AKRRRDRHTAAQSQYQLRLKAISDQLETDILRISDAIKEELAGVAAATANHFALLTDEPWLIQASHAMVVDQWTHLNELWSGRTCTIRHFGDGLEAIEQTRSALAGAELQLLTETCVAAAYVLPPEVERAIEDEAHELNVVLITNRRSHCHLVSRMLKEDVHKFVNVRTTWEDCERHWRVLNHDHAIHMFKATLESDLYTHPPRLHAILEKLRADQVAVHTNERLALLSQLDGLVTGGLSTEKVQRMVSALADMYKKEEERNAAYF 378
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Match: A0A3L6VXJ8_9STRA (DUF4455 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VXJ8_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 7.170e-8 Identity = 63/263 (23.95%), Postives = 115/263 (43.73%), Query Frame = 1
Query: 25 RRRRHDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAXXXXXXXXXXXXXXXXXXELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSNRGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLEGSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVAELRRKLEELSQAQNMAHAAAF 813
RR RH A +++ + + D E +L S ++ L V+A + + L D ++ A V W + L + R G EL+ + + A+ PP +ER +E++A ++N ++++NR LV+++ K+ V + + WE + WR + H A+ A LE +PP L L A+Q ++H +RL L +L L L+ +V + L ++ + + +AA F
Sbjct: 116 RRDRHTAAQSQYQLRLKAISDQLETDILRISDAIKEELAGVAAATANHFALLTDEPWLIQASHAMVVDQWTHLNELWSGRTCTIRHFGDGLEAIEQTRSALAGAELQLLTETCVAAAYVLPPEVERAIEDEAHELNVVLITNRRSHCHLVSRMLKEDVHKFVNVRTTWEDCERHWRVLNHDHAIHMFKATLESDLYTHPPRLHAILEKLRADQVAVHTNERLALLSQLDGLVTGGLSTEKVQRMVSALADMYKKEEERNAAYF 378
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Match: A0A6A5AGW2_9STRA (DUF4455 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AGW2_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 7.420e-8 Identity = 63/263 (23.95%), Postives = 115/263 (43.73%), Query Frame = 1
Query: 25 RRRRHDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAXXXXXXXXXXXXXXXXXXELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSNRGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLEGSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVAELRRKLEELSQAQNMAHAAAF 813
RR RH A +++ + + D E +L S ++ L V+A + + L D ++ A V W + L + R G EL+ + + A+ PP +ER +E++A ++N ++++NR LV+++ K+ V + + WE + WR + H A+ A LE +PP L L A+Q ++H +RL L +L L L+ +V + L ++ + + +AA F
Sbjct: 116 RRDRHTAAQSQYQLRLKAISDQLETDILRISDAIKEELAGVAAATANHFALLTDEPWLIQASHAMVVDQWTHLNELWSGRTCTIRHFGDGLEAIEQTRSALAGAELQLLTETCVAAAYVLPPEVERAIEDEAHELNVVLITNRRSHCHLVSRMLKEDVHKFVNVRTTWEDCERHWRVLNHDHAIHMFKATLESDLYTHPPRLHAILEKLRADQVAVHTNERLALLSQLDGLVTGGLSTEKVQRMVSALADMYKKEEERNAAYF 378 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig80971.18939.1 >prot_M-pyrifera_M_contig80971.18939.1 ID=prot_M-pyrifera_M_contig80971.18939.1|Name=mRNA_M-pyrifera_M_contig80971.18939.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=275bp RLQELARDRRRRHDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSback to top mRNA from alignment at M-pyrifera_M_contig80971:115..939+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig80971.18939.1 ID=mRNA_M-pyrifera_M_contig80971.18939.1|Name=mRNA_M-pyrifera_M_contig80971.18939.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=825bp|location=Sequence derived from alignment at M-pyrifera_M_contig80971:115..939+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig80971:115..939+ >mRNA_M-pyrifera_M_contig80971.18939.1 ID=mRNA_M-pyrifera_M_contig80971.18939.1|Name=mRNA_M-pyrifera_M_contig80971.18939.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1650bp|location=Sequence derived from alignment at M-pyrifera_M_contig80971:115..939+ (Macrocystis pyrifera P11B4 male)back to top |