mRNA_M-pyrifera_M_contig80966.18937.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80966.18937.1
Unique NamemRNA_M-pyrifera_M_contig80966.18937.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80966.18937.1 vs. uniprot
Match: UPI001B7F258D (oxidoreductase-like domain-containing protein 1 n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7F258D)

HSP 1 Score: 54.3 bits (129), Expect = 2.020e-7
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    4 PPTPPGPEECCMNACTNCVWVVYAAQLKEFEAQGGN--LDDVEEVEIDPGMEAFFALEKKLQS 186
            PP PP P +CCM+AC+NCVW+ Y  +L ++   GG   L  +EE   D  ++AF  +E +L +
Sbjct:  103 PPQPP-PLQCCMSACSNCVWIPYTEELLKYYRDGGERALAAIEEHVRDENIKAFLKMEIRLMN 164
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BLAST of mRNA_M-pyrifera_M_contig80966.18937.1 vs. uniprot
Match: K1Q4Z0_CRAGI (Uncharacterized protein C17orf90 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1Q4Z0_CRAGI)

HSP 1 Score: 51.6 bits (122), Expect = 2.570e-6
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    4 PPTPPGPEECCMNACTNCVWVVYAAQLKEFEAQGGNLDDVEEVE-ID-PGMEAFFALEKKL 180
            PP PP   +CCM+ C NCVW++YA +LK++  + GN     E++ ID P ++ F  LE  L
Sbjct:  121 PPEPP--VDCCMSGCANCVWIMYANELKKYYEKDGNERAKREIDKIDNPSLKMFLKLELGL 179
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BLAST of mRNA_M-pyrifera_M_contig80966.18937.1 vs. uniprot
Match: A0A433U578_ELYCH (Oxidoreductase-like domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433U578_ELYCH)

HSP 1 Score: 50.1 bits (118), Expect = 1.170e-5
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    4 PPTPPGPEECCMNACTNCVWVVYAAQLKEFEAQGGNL--DDVEEVEIDPGMEAFFALEKKLQ 183
            PP PP    CC   C NCVW+VYA +L+++   GG      +E+++ DP ++AF  LE  L+
Sbjct:  140 PPEPP--ITCCGTGCANCVWIVYAEELRDYYKDGGEQAKQALEKID-DPSLKAFIKLELGLR 198
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BLAST of mRNA_M-pyrifera_M_contig80966.18937.1 vs. uniprot
Match: A0A835XGL9_9CHLO (Oxidoreductase-like domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XGL9_9CHLO)

HSP 1 Score: 47.4 bits (111), Expect = 6.050e-5
Identity = 23/62 (37.10%), Postives = 32/62 (51.61%), Query Frame = 1 
Query:    7 PTPPGPEECCMNACTNCVWVVYAAQLKEFEAQGGNLDDVE-------EVEIDPGMEAFFALE 171
            P  PGPE+CC N CT CVW  YA +L+ ++ +   L+          +V    GM AF  +E
Sbjct:    2 PEEPGPEDCCQNGCTRCVWSSYAEELQAWKEEVARLESGAAGARKRPDVGTSVGMAAFAEVE 63
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80966.18937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001B7F258D2.020e-741.27oxidoreductase-like domain-containing protein 1 n=... [more]
K1Q4Z0_CRAGI2.570e-642.62Uncharacterized protein C17orf90 n=1 Tax=Crassostr... [more]
A0A433U578_ELYCH1.170e-540.32Oxidoreductase-like domain-containing protein n=1 ... [more]
A0A835XGL9_9CHLO6.050e-537.10Oxidoreductase-like domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80966contigM-pyrifera_M_contig80966:744..938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOxidoreductase-like, N-terminal
Ec32 orthologEc-12_005000.1
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.3964434-CDS-M-pyrifera_M_contig80966:743..9381622816714.3964434-CDS-M-pyrifera_M_contig80966:743..938Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80966 744..938 -
1692278136.057945-CDS-M-pyrifera_M_contig80966:743..9381692278136.057945-CDS-M-pyrifera_M_contig80966:743..938Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80966 744..938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80966.18937.1prot_M-pyrifera_M_contig80966.18937.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80966 744..938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80966.18937.1

>prot_M-pyrifera_M_contig80966.18937.1 ID=prot_M-pyrifera_M_contig80966.18937.1|Name=mRNA_M-pyrifera_M_contig80966.18937.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
TPPTPPGPEECCMNACTNCVWVVYAAQLKEFEAQGGNLDDVEEVEIDPGM
EAFFALEKKLQSKP*
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mRNA from alignment at M-pyrifera_M_contig80966:744..938-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80966.18937.1 ID=mRNA_M-pyrifera_M_contig80966.18937.1|Name=mRNA_M-pyrifera_M_contig80966.18937.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig80966:744..938- (Macrocystis pyrifera P11B4 male)
ACTCCCCCCACCCCACCAGGTCCCGAAGAATGCTGCATGAACGCATGCAC
CAACTGCGTGTGGGTCGTGTATGCAGCGCAGCTGAAGGAGTTTGAGGCAC
AAGGGGGCAATTTGGACGACGTGGAAGAGGTGGAAATCGATCCGGGGATG
GAAGCGTTCTTCGCCCTCGAGAAAAAACTGCAATCGAAACCATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80966:744..938-

>mRNA_M-pyrifera_M_contig80966.18937.1 ID=mRNA_M-pyrifera_M_contig80966.18937.1|Name=mRNA_M-pyrifera_M_contig80966.18937.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig80966:744..938- (Macrocystis pyrifera P11B4 male)
ACTCCCCCCACCCCACCAGGTCCCGAAGAATGCTGCATGAACGCATGCAC
CAACTGCGTGTGGGTCGTGTATGCAGCGCAGCTGAAGGAGTTTGAGGCAC
AAGGGGGCAATTTGGACGACGTGGAAGAGGTGGAAATCGATCCGGGGATG
GAAGCGTTCTTCGCCCTCGAGAAAAAACTGCAATCGAAACCATAGACTCC
CCCCACCCCACCAGGTCCCGAAGAATGCTGCATGAACGCATGCACCAACT
GCGTGTGGGTCGTGTATGCAGCGCAGCTGAAGGAGTTTGAGGCACAAGGG
GGCAATTTGGACGACGTGGAAGAGGTGGAAATCGATCCGGGGATGGAAGC
GTTCTTCGCCCTCGAGAAAAAACTGCAATCGAAACCATAG
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