mRNA_M-pyrifera_M_contig80963.18935.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80963.18935.1
Unique NamemRNA_M-pyrifera_M_contig80963.18935.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Match: A0A1D3CVP7_9EIME (Sec1 family protein n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A1D3CVP7_9EIME)

HSP 1 Score: 102 bits (255), Expect = 3.500e-22
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 1
Query:    1 GGGFGGGTGTGGAPWKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLGSREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLEFLAKGAARMGSAALVGAVKEFPLSAVSIGPSLFSLGQPRAFADLLSSGEGADARANQVVEAVVQGLLGVCGAL 519
            GG FGG    GGAPWKVL+ D  A+++++  + + +LR+HGVTLPL L  SR  I E  AV L   S   +  ++RD+E  LY  +++ FT  +    L+ LA+GAAR G+   V +V E  +  + + P  FSL  P  F+ +   G   D      ++A  +GLL V   L
Sbjct:   31 GGSFGGHPVGGGAPWKVLIFDEAAKDILAPLMTIGVLRRHGVTLPLSLSASRTPIVEAPAVYLVSSSKESISAIIRDMEARLYALYYINFTSGVQTELLQQLAEGAARAGTVGAVVSVVERHVGFICLSPCEFSLNLPGLFSRM--HGTSGDEAVQAAIDAAAEGLLSVLATL 201          
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Match: A0A0G4EG12_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EG12_VITBC)

HSP 1 Score: 93.2 bits (230), Expect = 7.160e-19
Identity = 59/170 (34.71%), Postives = 92/170 (54.12%), Query Frame = 1
Query:   16 GGTGTGGAPWKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLGSREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLEFLAKGAARMGSAALVGAVKEFPLSAVSIGPSLFSLGQPRAFADLLSSGEGADARANQVVEAVVQGLLGVCGALGV 525
            GG  T G  WK+++ D + ++V++  + +  LR+HGVTL LPL   R A+PE  +V    P+   ++R++ D +  LY ++ L F+  +PR  LE LA+G  +  S   +  V +  LS VS+ PS FSL    A+  L  +    D      ++ VV+GL  V   LGV
Sbjct:   42 GGPSTEGVTWKIVIYDRFCQDVLAPLMKVGGLRRHGVTLHLPLHSERSAVPEVPSVYFVEPTPQNIQRIIADCQRNLYERYHLNFSSSIPRPLLETLAQGVLQANSVHQITRVVDRFLSFVSLSPSQFSLNLTNAYRTLHDA-TIQDHEIEAFIDRVVEGLFSVLATLGV 210          
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Match: A0A059LG25_9CHLO (Sec1 family protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LG25_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 1.040e-15
Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   43 WKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLGSREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLEFLAKGAARMGSAA-LVGAVKEFPLSAVSIGPSLFSL 405
            +KVL+LD   +++++  +P+S LR+HGVTL L L G RE IP+  AV L  PS + ++R+ +D    LY    L F+  L R  LE LA   A  GS A  V  V +  L   ++ P LF+L
Sbjct:   34 YKVLILDNQTKDIIAPLLPVSELRRHGVTLHLLLEGEREPIPDVPAVYLVRPSESAVDRIAQDCAAGLYDSLHLNFSTHLSRPLLERLASRVAASGSGAGRVARVHDQYLQYTALEPGLFTL 155          
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Match: U6KTK9_EIMTE (Uncharacterized protein n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6KTK9_EIMTE)

HSP 1 Score: 79.7 bits (195), Expect = 1.140e-15
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   31 GGAPWKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLGSREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLEFLAKGAAR 324
            GG PWKVL+ D  A+++++  + + +LR+HGVTLPL L   R +I E  AV L   SS  LE +L+DL+  +Y  F+  F   +P   L+ LA+GAA+
Sbjct:   42 GGGPWKVLIFDEAAKDILAPLMTVGVLRRHGVTLPLSLGAPRSSILEAPAVYLIGSSSKNLELILKDLKNKIYSFFYFNFISQVPTPFLQALAEGAAK 139          
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Match: A0A833R2M0_9POAL (SEC1 family transport protein SLY1-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R2M0_9POAL)

HSP 1 Score: 84.0 bits (206), Expect = 1.150e-15
Identity = 54/161 (33.54%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   43 WKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLGSREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLEFLAKGAARMGSAALVGAVKEFPLSAVSIGPSLFSLGQPRAFADLLSSGEGADARANQVVEAVVQGLLGVCGALGV 525
            +K+L++D + R ++S  + ++ LRKHGVTL LP+   R+ +P   AV     +S  ++ V +D    LY    L F+  LPR  L+ LA    +  SAA +  + +  L  +S+  SLFSLGQ   +  L     G D     ++E +V G+  V   LGV
Sbjct:   39 YKILIMDSFCRSILSPLIRVNDLRKHGVTLYLPIEKPRQPVPGVPAVYFIRATSENIDLVAKDASAPLYDSLHLNFSSSLPRPLLDHLASKTVQTDSAARISKLYDQYLEFISLEESLFSLGQADTYLQLNDPKAG-DQEIEAIIEKIVSGIFCVLATLGV 198          
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Match: A0A6P5EDX7_ANACO (LOW QUALITY PROTEIN: SEC1 family transport protein SLY1-like n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EDX7_ANACO)

HSP 1 Score: 82.0 bits (201), Expect = 5.350e-15
Identity = 51/152 (33.55%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   43 WKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLGSREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLEFLAKGAARMGSAALVGAVKEFPLSAVSIGPSLFSLGQPRAFADLLSSGEGADARANQVVEAVVQGL 498
            +K+L++DG+ R ++S  + ++ LR HGVTL   +   R+ +P+  A+    P+   ++R+  D   ALY    L F+  LPR  L+ LA      G+A  V  V +  L  VS+  +LFSL QPR +  +     G D    ++VE +V GL
Sbjct:   47 YKILIMDGFCRSILSPLIRVNDLRSHGVTLFFGIDKERQRVPDVPALYFVRPTPENVDRIAADASRALYDSLHLNFSSSLPRPLLDRLASRLVESGAADRVSRVFDQYLEFVSLEDALFSLAQPRTYVHINDPAAG-DREIEEIVERIVGGL 197          
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Match: UPI001B37F755 (SEC1 family transport protein-like protein SLY1 n=1 Tax=Cucurbitaria berberidis CBS 394.84 TaxID=1168544 RepID=UPI001B37F755)

HSP 1 Score: 81.3 bits (199), Expect = 1.010e-14
Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 1
Query:   43 WKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLGSREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLEFLAKGAARMGSAALVGAVKEFPLSAVSIGPSLFSLGQPRAFADLLSSGEGADARANQVVEAVVQGLLGVCGALGV 525
            WK+L+LDG AR+ V++ + ++ LR  GVT+ L L   R  IP+T  + L  P++  LE +  DL   LY   +L F   +PR  LE L       G+A  V  + +  L+ V    +LF L Q  A+   ++S +  D   ++V++ VV GL  V   +GV
Sbjct:   47 WKILILDGAARDTVASVLHVNDLRAAGVTIHLNLHTKRHPIPDTPVIYLVEPNTQNLEIITNDLAQGLYSPAYLNFLSSIPREHLESLGAQMVATGTAEHVAQLYDQHLNFVVADDNLFHLNQKGAY-HTINSSQTPDQELDKVIDQVVSGLFSVVVTMGV 206          
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Match: A0A0M3K9D9_ANISI (Protein sly1 homolog (inferred by orthology to a D. melanogaster protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3K9D9_ANISI)

HSP 1 Score: 79.0 bits (193), Expect = 6.370e-14
Identity = 51/165 (30.91%), Postives = 87/165 (52.73%), Query Frame = 1
Query:   43 WKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLGSREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLEFLAKGAARMGSAALVGAVKEFPLSAVSIGPSLFSLGQPRAFADL----LSSGEGADARANQVVEAVVQGLLGVCGALGV 525
            WK+L+LD +AR+++S  + +  LR  GVTL L L  +RE++P+  AV L  P+   ++ +  DL   +Y  F++    PL R  LE LA  A    S   V  + +  L+ +S+   LF L +  + + L    +S     + + + +++ +V GL  VC  LG+
Sbjct:   39 WKILILDRYARDIISPLITVKQLRDLGVTLHLLLDTNRESLPDVPAVYLVSPNDENIKYISDDLSKVMYDSFYINMISPLSRPRLEQLASAAVHGSSIQRVQKLTDQFLNFISLEDDLFVLRRYNSDSPLSFYAISDPSMTNQQMDMLIDTIVDGLFSVCATLGI 203          
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Match: A0A6V7NRU7_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NRU7_ANACO)

HSP 1 Score: 75.9 bits (185), Expect = 8.830e-14
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   43 WKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLGSREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLEFLAKGAARMGSAALVGAVKEFPLSAVSIGPSLFSLGQPRAF 423
            +K+L++DG+ R ++S  + ++ LR HGVTL   +   R+ +P+  A+    P+   ++R+  D   ALY    L F+  LPR  L+ LA      G+A  V  V +  L  VS+  +LFSL QPR +
Sbjct:   47 YKILIMDGFCRSILSPLIRVNDLRSHGVTLFFGIDKERQRVPDVPALYFVRPTPENVDRIAADASRALYDSLHLNFSSSLPRPLLDRLASRLVESGAADRVSRVFDQYLEFVSLEDALFSLAQPRTY 173          
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Match: A0A6V7NSB4_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NSB4_ANACO)

HSP 1 Score: 75.9 bits (185), Expect = 2.630e-13
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   43 WKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLGSREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLEFLAKGAARMGSAALVGAVKEFPLSAVSIGPSLFSLGQPRAF 423
            +K+L++DG+ R ++S  + ++ LR HGVTL   +   R+ +P+  A+    P+   ++R+  D   ALY    L F+  LPR  L+ LA      G+A  V  V +  L  VS+  +LFSL QPR +
Sbjct:  122 YKILIMDGFCRSILSPLIRVNDLRSHGVTLFFGIDKERQRVPDVPALYFVRPTPENVDRIAADASRALYDSLHLNFSSSLPRPLLDRLASRLVESGAADRVSRVFDQYLEFVSLEDALFSLAQPRTY 248          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80963.18935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A1D3CVP7_9EIME3.500e-2237.57Sec1 family protein n=1 Tax=Cyclospora cayetanensi... [more]
A0A0G4EG12_VITBC7.160e-1934.71Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A059LG25_9CHLO1.040e-1540.16Sec1 family protein (Fragment) n=1 Tax=Helicospori... [more]
U6KTK9_EIMTE1.140e-1542.86Uncharacterized protein n=1 Tax=Eimeria tenella Ta... [more]
A0A833R2M0_9POAL1.150e-1533.54SEC1 family transport protein SLY1-like protein n=... [more]
A0A6P5EDX7_ANACO5.350e-1533.55LOW QUALITY PROTEIN: SEC1 family transport protein... [more]
UPI001B37F7551.010e-1434.16SEC1 family transport protein-like protein SLY1 n=... [more]
A0A0M3K9D9_ANISI6.370e-1430.91Protein sly1 homolog (inferred by orthology to a D... [more]
A0A6V7NRU7_ANACO8.830e-1434.65Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
A0A6V7NSB4_ANACO2.630e-1334.65Uncharacterized protein n=1 Tax=Ananas comosus var... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80963contigM-pyrifera_M_contig80963:406..930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score107.8
Seed ortholog evalue5.1e-21
Seed eggNOG ortholog3055.EDP00608
Preferred nameSLY1
KEGG koko:K19998
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Belongs to the STXBP unc-18 SEC1 family
EggNOG OGs34HI2@3041,37RTZ@33090,COG5158@1,KOG1301@2759
COG Functional cat.U
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.3317177-CDS-M-pyrifera_M_contig80963:405..9301622816714.3317177-CDS-M-pyrifera_M_contig80963:405..930Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80963 406..930 +
1692278136.0325377-CDS-M-pyrifera_M_contig80963:405..9301692278136.0325377-CDS-M-pyrifera_M_contig80963:405..930Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80963 406..930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80963.18935.1prot_M-pyrifera_M_contig80963.18935.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80963 406..930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80963.18935.1

>prot_M-pyrifera_M_contig80963.18935.1 ID=prot_M-pyrifera_M_contig80963.18935.1|Name=mRNA_M-pyrifera_M_contig80963.18935.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
GGGFGGGTGTGGAPWKVLVLDGWAREVVSACVPLSLLRKHGVTLPLPLLG
SREAIPETDAVVLGVPSSAVLERVLRDLEGALYRKFFLCFTHPLPRAGLE
FLAKGAARMGSAALVGAVKEFPLSAVSIGPSLFSLGQPRAFADLLSSGEG
ADARANQVVEAVVQGLLGVCGALGV
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mRNA from alignment at M-pyrifera_M_contig80963:406..930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80963.18935.1 ID=mRNA_M-pyrifera_M_contig80963.18935.1|Name=mRNA_M-pyrifera_M_contig80963.18935.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig80963:406..930+ (Macrocystis pyrifera P11B4 male)
GGAGGCGGGTTCGGGGGTGGAACTGGGACAGGAGGGGCGCCTTGGAAGGT GCTGGTGTTGGATGGGTGGGCGAGGGAGGTGGTTTCGGCGTGTGTGCCGC TGTCGTTGCTTCGGAAACACGGGGTGACTCTTCCACTGCCTCTGCTGGGT TCACGAGAGGCGATTCCAGAAACGGACGCCGTGGTATTGGGAGTGCCTTC GTCGGCGGTGCTGGAACGCGTGCTGCGCGATCTGGAGGGGGCTCTGTACC GGAAATTCTTCCTCTGCTTCACGCACCCGCTCCCTCGCGCTGGACTTGAA TTCTTGGCAAAGGGAGCCGCAAGAATGGGATCAGCGGCATTGGTGGGTGC CGTGAAGGAGTTTCCTCTCTCGGCCGTGTCGATCGGACCTTCTCTCTTCT CGCTGGGCCAACCGCGAGCGTTTGCAGATTTGTTGTCCAGCGGGGAAGGA GCAGACGCGAGGGCAAATCAAGTGGTGGAGGCTGTTGTGCAAGGGTTGTT GGGCGTGTGTGGAGCATTGGGTGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80963:406..930+

>mRNA_M-pyrifera_M_contig80963.18935.1 ID=mRNA_M-pyrifera_M_contig80963.18935.1|Name=mRNA_M-pyrifera_M_contig80963.18935.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig80963:406..930+ (Macrocystis pyrifera P11B4 male)
GGAGGCGGGTTCGGGGGTGGAACTGGGACAGGAGGGGCGCCTTGGAAGGT
GCTGGTGTTGGATGGGTGGGCGAGGGAGGTGGTTTCGGCGTGTGTGCCGC
TGTCGTTGCTTCGGAAACACGGGGTGACTCTTCCACTGCCTCTGCTGGGT
TCACGAGAGGCGATTCCAGAAACGGACGCCGTGGTATTGGGAGTGCCTTC
GTCGGCGGTGCTGGAACGCGTGCTGCGCGATCTGGAGGGGGCTCTGTACC
GGAAATTCTTCCTCTGCTTCACGCACCCGCTCCCTCGCGCTGGACTTGAA
TTCTTGGCAAAGGGAGCCGCAAGAATGGGATCAGCGGCATTGGTGGGTGC
CGTGAAGGAGTTTCCTCTCTCGGCCGTGTCGATCGGACCTTCTCTCTTCT
CGCTGGGCCAACCGCGAGCGTTTGCAGATTTGTTGTCCAGCGGGGAAGGA
GCAGACGCGAGGGCAAATCAAGTGGTGGAGGCTGTTGTGCAAGGGTTGTT
GGGCGTGTGTGGAGCATTGGGTGTCGGAGGCGGGTTCGGGGGTGGAACTG
GGACAGGAGGGGCGCCTTGGAAGGTGCTGGTGTTGGATGGGTGGGCGAGG
GAGGTGGTTTCGGCGTGTGTGCCGCTGTCGTTGCTTCGGAAACACGGGGT
GACTCTTCCACTGCCTCTGCTGGGTTCACGAGAGGCGATTCCAGAAACGG
ACGCCGTGGTATTGGGAGTGCCTTCGTCGGCGGTGCTGGAACGCGTGCTG
CGCGATCTGGAGGGGGCTCTGTACCGGAAATTCTTCCTCTGCTTCACGCA
CCCGCTCCCTCGCGCTGGACTTGAATTCTTGGCAAAGGGAGCCGCAAGAA
TGGGATCAGCGGCATTGGTGGGTGCCGTGAAGGAGTTTCCTCTCTCGGCC
GTGTCGATCGGACCTTCTCTCTTCTCGCTGGGCCAACCGCGAGCGTTTGC
AGATTTGTTGTCCAGCGGGGAAGGAGCAGACGCGAGGGCAAATCAAGTGG
TGGAGGCTGTTGTGCAAGGGTTGTTGGGCGTGTGTGGAGCATTGGGTGTC
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