mRNA_M-pyrifera_M_contig80962.18934.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80962.18934.1
Unique NamemRNA_M-pyrifera_M_contig80962.18934.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Match: A0A162QHG4_MUCCL (Uncharacterized protein n=4 Tax=Mucor TaxID=4830 RepID=A0A162QHG4_MUCCL)

HSP 1 Score: 89.7 bits (221), Expect = 1.000e-18
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 VEVREDYVPRLRGDTGKEGVADTYIDPQTGKAVPLSNVDQHMRVALIDPKWREDQARATDKQRDT-VLAQGDDVADTLRRMAAARADIFGSSAAVGTKRPRTDEE 312
            +++R DY P+L G T  +G   T + P+ G+A+P++ + +HMR+ L+DPKW+E +     KQRD+ +L +G+DVA  L+ ++  R DIFGS      KR R  EE
Sbjct:  351 IKIRTDYKPKLYGTTPSKGAVPTELCPRCGEAIPVAEMAEHMRIELLDPKWKEQKMAMEAKQRDSNLLQEGNDVAKILKNISGLRPDIFGSDEVDANKRIREQEE 455
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BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Match: A0A0B7MSX6_9FUNG (Uncharacterized protein n=2 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7MSX6_9FUNG)

HSP 1 Score: 88.2 bits (217), Expect = 3.450e-18
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:    1 VEVREDYVPRLRGDTGKEGVADTYIDPQTGKAVPLSNVDQHMRVALIDPKWREDQARATDKQRDT-VLAQGDDVADTLRRMAAARADIFGSSAAVGTKRPRTDEE 312
            +++R DY P+L G T  +G   T   P+ G+A+P++ + +HMR+ L+DPKW+E +     KQRD+ +L +G+DVA  L+ ++  R DIFGS      KR R  EE
Sbjct:  332 IKIRTDYKPKLYGTTANKGAVATERCPRCGEAIPVAEMAEHMRIELLDPKWKEQKMAMEAKQRDSNLLQEGNDVAKILKNISGLRPDIFGSDEVDANKRIREQEE 436
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BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Match: A0A7S3LZ45_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZ45_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.230e-17
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   31 LRGDTGKEGVADTYIDPQTGKAVPLSNVDQHMRVALIDPKWREDQARATDKQRDTVLAQGDDVADTLRRMAAARADIFGSSA 276
            LR +   EG+    +DP +GKAVP+S + +HMR+ L+DP+WRE Q R  DKQR+T  A+G  +AD+L+  A  R DIFG +A
Sbjct:   20 LRANANTEGLM--MVDPISGKAVPVSQMSEHMRIQLLDPRWREQQQRFVDKQRETGYAEGGSIADSLKNFARKRGDIFGQAA 99
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BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Match: A0A8H7R145_9FUNG (Uncharacterized protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7R145_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 2.240e-17
Identity = 40/105 (38.10%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:    1 VEVREDYVPRLRGDTGKEGVADTYIDPQTGKAVPLSNVDQHMRVALIDPKWREDQARATDKQRDT-VLAQGDDVADTLRRMAAARADIFGSSAAVGTKRPRTDEE 312
            +++R DY P+L G T  +G + T + P+ G+A+P+  +D+HMR+ L+DPKW++ +     KQRD+ +L +G+D+A  L+ ++  R DIFGS      K+ +  EE
Sbjct:  329 IKIRADYKPKLYGTTPTKGPSATALCPRCGEAIPVHELDEHMRIELLDPKWKDQKMAMEAKQRDSNLLQEGNDIAKILKNISGLRPDIFGSDEMDAYKKIKEQEE 433
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BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Match: A0A1C7NDE8_9FUNG (Splicing factor 3A subunit 1 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NDE8_9FUNG)

HSP 1 Score: 84.7 bits (208), Expect = 5.690e-17
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:    1 VEVREDYVPRLRGDTGKEGVADTYIDPQTGKAVPLSNVDQHMRVALIDPKWREDQARATDKQRDT-VLAQGDDVADTLRRMAAARADIFGSSAAVGTKRPRTDEE 312
            +++R DY PRL G T  +    T + P+ G+A+P+  + +HMR+ L+DPKW+E +     KQRD+ +L +G+DVA  L+ ++  R DIFGS  A   KR R   E
Sbjct:  332 IKIRTDYKPRLIGTTPIKVAVPTELCPRCGEAIPVDEMAEHMRIELLDPKWKEQKMAMEAKQRDSNLLQEGNDVAKILKNISGLRPDIFGSDEADANKRIREQAE 436
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BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Match: D7FWN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWN9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.660e-16
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 VEVREDYVPRLRGDTGKEGVADTY-IDPQTGKAVPLSNVDQHMRVALIDPKWREDQARATDKQRDTVLAQGDDVADTLRRMAAARADIFGSS 273
            + V  DY P +   TG      T  IDP TG  V  S +  HMR+ L+DPKWRE+QARA  KQ+DT LA+G+ +A +L+ +A  R DIFGS+
Sbjct:  419 IHVVTDYKPGVA--TGSATALPTMVIDPITGATVAASELSDHMRIQLMDPKWREEQARAAAKQKDTALAEGESIAASLKSLARKRGDIFGSA 508
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BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Match: A0A068RX27_9FUNG (Splicing factor 3a subunit 1-like n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RX27_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 1.280e-15
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:    1 VEVREDYVPRLRGDTGKEGVADTYIDPQTGKAVPLSNVDQHMRVALIDPKWREDQARATDKQRDT-VLAQGDDVADTLRRMAAARADIFGSS-AAVGTKRPRTDEE 312
            ++VR DY P+L G    +    T I P+ G A+P+S +D HMR+ L+DPKW+E +  A  K +D+ +L +G DVA  L+  +  R+DIFG    A+G K    +EE
Sbjct:  348 IKVRTDYQPKLLGANAAKKNEPTQICPRCGLAIPVSEMDHHMRIELLDPKWKEQKLAAEAKTKDSNLLQEGTDVAKILKNFSGYRSDIFGEEETAIGKKIHEEEEE 453
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BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Match: A0A162Q382_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162Q382_PHYB8)

HSP 1 Score: 80.5 bits (197), Expect = 1.730e-15
Identity = 40/106 (37.74%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:    1 VEVREDYVPRLRGDTGKEGVADTYIDPQTGKAVPLSNVDQHMRVALIDPKWREDQARATDKQRDT-VLAQGDDVADTLRRMAAARADIFGSSAA-VGTKRPRTDEE 312
            +++R DY PR+ G    +G   T + P+ G+A+P+S +D+H+R+ L+DPKW+E +     K +D+ +L +G DVA  LR  +  R+DIFG+    +G K    +EE
Sbjct:  340 IKIRTDYKPRILGSGPAKGNEATQLCPRCGEAIPISEMDEHVRIELLDPKWKEQKLAMEAKTKDSNLLQEGTDVAKILRNFSGYRSDIFGAEETEIGKKIVAAEEE 445
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BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Match: A0A4P9WKR8_9FUNG (Pre-mRNA splicing factor PRP21 like protein-domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WKR8_9FUNG)

HSP 1 Score: 77.0 bits (188), Expect = 2.650e-14
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 VEVREDYVPRLRGDTGKEGVADTYIDPQTGKAVPLSNVDQHMRVALIDPKWREDQARATDKQRDTVLAQGDDVADTLRRMAAARADIFGS 270
            +++R DYVP+L   +  E    T I P+ G+A+  S++++HMR+ L+DPK RE +A A  K R + + QGD V+ +L R  A R DIFGS
Sbjct:  315 IKIRTDYVPKLGSSSVSEN---TSICPKCGEAIKTSDLEEHMRIELLDPKGREQKAAAESKNRTSNIVQGDAVSKSLARFGAFRTDIFGS 401
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BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Match: A0A7S2K8M8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8M8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.430e-14
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 VEVREDYVPRL--RGDTGKEGVADTYIDPQTGKAVPLSNVDQHMRVALIDPKWREDQARATDKQRDTVLAQGDDVADTLRRMAAARADIFGSS 273
            ++V  DY P++     T  +      IDP TGKAV L+++ +HMR+ L+DPKW  ++ R  +KQ+++    GD +A  + R+A  R+DIFGS+
Sbjct:   60 IKVVPDYTPKVVDSASTLTDTTRTHMIDPITGKAVALTDMSEHMRIQLLDPKWAAEKRRFLEKQKESNFVAGDQIASNINRLAQQRSDIFGSA 152
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80962.18934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A162QHG4_MUCCL1.000e-1840.95Uncharacterized protein n=4 Tax=Mucor TaxID=4830 R... [more]
A0A0B7MSX6_9FUNG3.450e-1840.95Uncharacterized protein n=2 Tax=Mucoraceae TaxID=3... [more]
A0A7S3LZ45_9STRA2.230e-1748.78Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8H7R145_9FUNG2.240e-1738.10Uncharacterized protein n=1 Tax=Mucor saturninus T... [more]
A0A1C7NDE8_9FUNG5.690e-1740.95Splicing factor 3A subunit 1 n=1 Tax=Choanephora c... [more]
D7FWN9_ECTSI3.660e-1647.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A068RX27_9FUNG1.280e-1540.57Splicing factor 3a subunit 1-like n=2 Tax=Lichthei... [more]
A0A162Q382_PHYB81.730e-1537.74Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
A0A4P9WKR8_9FUNG2.650e-1443.33Pre-mRNA splicing factor PRP21 like protein-domain... [more]
A0A7S2K8M8_9STRA3.430e-1438.71Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80962contigM-pyrifera_M_contig80962:531..842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score88.6
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog36080.S2JFB1
Preferred namePRP21
KEGG koko:K12825
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000389,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1990904
EggNOG free text desc.Pre-mRNA splicing factor PRP21 like protein
EggNOG OGs1GRZV@112252,38BQF@33154,3NV6A@4751,KOG0007@1,KOG0007@2759
COG Functional cat.A
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.2943385-CDS-M-pyrifera_M_contig80962:530..8421622816714.2943385-CDS-M-pyrifera_M_contig80962:530..842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80962 531..842 +
1692278136.0184865-CDS-M-pyrifera_M_contig80962:530..8421692278136.0184865-CDS-M-pyrifera_M_contig80962:530..842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80962 531..842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80962.18934.1prot_M-pyrifera_M_contig80962.18934.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80962 531..842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80962.18934.1

>prot_M-pyrifera_M_contig80962.18934.1 ID=prot_M-pyrifera_M_contig80962.18934.1|Name=mRNA_M-pyrifera_M_contig80962.18934.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
VEVREDYVPRLRGDTGKEGVADTYIDPQTGKAVPLSNVDQHMRVALIDPK
WREDQARATDKQRDTVLAQGDDVADTLRRMAAARADIFGSSAAVGTKRPR
TDEE
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mRNA from alignment at M-pyrifera_M_contig80962:531..842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80962.18934.1 ID=mRNA_M-pyrifera_M_contig80962.18934.1|Name=mRNA_M-pyrifera_M_contig80962.18934.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig80962:531..842+ (Macrocystis pyrifera P11B4 male)
GTAGAAGTGAGAGAAGATTATGTGCCAAGGTTGAGAGGTGATACTGGAAA
AGAAGGAGTTGCTGATACTTATATTGATCCACAGACTGGAAAAGCTGTTC
CACTCTCAAATGTGGACCAGCACATGCGTGTGGCGTTGATTGATCCAAAG
TGGAGAGAAGATCAAGCAAGGGCAACAGATAAACAACGAGATACTGTACT
TGCACAAGGAGATGATGTCGCTGATACGTTGCGGCGTATGGCAGCTGCAA
GAGCAGACATTTTCGGTTCTTCCGCTGCAGTTGGAACCAAACGTCCAAGA
ACTGACGAAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80962:531..842+

>mRNA_M-pyrifera_M_contig80962.18934.1 ID=mRNA_M-pyrifera_M_contig80962.18934.1|Name=mRNA_M-pyrifera_M_contig80962.18934.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig80962:531..842+ (Macrocystis pyrifera P11B4 male)
GTAGAAGTGAGAGAAGATTATGTGCCAAGGTTGAGAGGTGATACTGGAAA
AGAAGGAGTTGCTGATACTTATATTGATCCACAGACTGGAAAAGCTGTTC
CACTCTCAAATGTGGACCAGCACATGCGTGTGGCGTTGATTGATCCAAAG
TGGAGAGAAGATCAAGCAAGGGCAACAGATAAACAACGAGATACTGTACT
TGCACAAGGAGATGATGTCGCTGATACGTTGCGGCGTATGGCAGCTGCAA
GAGCAGACATTTTCGGTTCTTCCGCTGCAGTTGGAACCAAACGTCCAAGA
ACTGACGAAGAAGTAGAAGTGAGAGAAGATTATGTGCCAAGGTTGAGAGG
TGATACTGGAAAAGAAGGAGTTGCTGATACTTATATTGATCCACAGACTG
GAAAAGCTGTTCCACTCTCAAATGTGGACCAGCACATGCGTGTGGCGTTG
ATTGATCCAAAGTGGAGAGAAGATCAAGCAAGGGCAACAGATAAACAACG
AGATACTGTACTTGCACAAGGAGATGATGTCGCTGATACGTTGCGGCGTA
TGGCAGCTGCAAGAGCAGACATTTTCGGTTCTTCCGCTGCAGTTGGAACC
AAACGTCCAAGAACTGACGAAGAA
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