mRNA_M-pyrifera_M_contig8061.18871.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8061.18871.1
Unique NamemRNA_M-pyrifera_M_contig8061.18871.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8061.18871.1 vs. uniprot
Match: D7G4C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C1_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.820e-14
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    4 IKQLQLTCTSVCSDCRASSVFHVRVVSRTPRRLWTTARGPNRRRRSGKGAGVPGLPPLRVGRLTFGEYYNRAISAVALPSELTK 255
            +KQLQL   S+CS+ RA + FH+RVV RTP+RLWTT         +GK  G  G+PP+RV  LTF EY+  A+  V   + L K
Sbjct:   11 VKQLQLASLSICSESRACTAFHLRVVRRTPKRLWTTTSS------TGKRVGTDGVPPMRVDWLTFREYFEPAVRNVVWRAGLRK 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8061.18871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4C1_ECTSI1.820e-1447.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8061contigM-pyrifera_M_contig8061:5665..6150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.3003292-CDS-M-pyrifera_M_contig8061:5664..61501622816711.3003292-CDS-M-pyrifera_M_contig8061:5664..6150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8061 5665..6150 +
1692278134.4591322-CDS-M-pyrifera_M_contig8061:5664..61501692278134.4591322-CDS-M-pyrifera_M_contig8061:5664..6150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8061 5665..6150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8061.18871.1prot_M-pyrifera_M_contig8061.18871.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8061 5665..6150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8061.18871.1

>prot_M-pyrifera_M_contig8061.18871.1 ID=prot_M-pyrifera_M_contig8061.18871.1|Name=mRNA_M-pyrifera_M_contig8061.18871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
VIKQLQLTCTSVCSDCRASSVFHVRVVSRTPRRLWTTARGPNRRRRSGKG
AGVPGLPPLRVGRLTFGEYYNRAISAVALPSELTKVTFGKRFNQDLKCVR
WPSTLAEVRFGCNFDSPIAGMTWPTGLQRVMFGCGFNQSIDGLLWPAGLQ
EIVLGGAFNKPL
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mRNA from alignment at M-pyrifera_M_contig8061:5665..6150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8061.18871.1 ID=mRNA_M-pyrifera_M_contig8061.18871.1|Name=mRNA_M-pyrifera_M_contig8061.18871.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig8061:5665..6150+ (Macrocystis pyrifera P11B4 male)
GTCATCAAGCAGCTACAGCTGACGTGCACCTCGGTTTGCAGCGACTGCCG
GGCGTCGTCCGTCTTCCATGTCCGAGTGGTGTCTCGGACCCCCAGGCGGC
TCTGGACAACTGCGCGCGGTCCCAATAGGCGCCGACGGAGTGGGAAAGGA
GCCGGCGTTCCGGGGCTTCCTCCACTGCGTGTGGGTCGACTCACGTTTGG
GGAGTACTACAACCGGGCGATAAGCGCGGTGGCGTTGCCCTCCGAACTCA
CCAAGGTCACGTTCGGAAAACGTTTCAACCAAGACTTGAAATGCGTGCGT
TGGCCTTCGACGCTTGCGGAGGTCAGGTTTGGGTGTAACTTTGACTCGCC
CATCGCCGGCATGACGTGGCCTACGGGGCTGCAGAGGGTTATGTTCGGGT
GCGGATTCAACCAGAGCATAGACGGCCTTCTGTGGCCAGCCGGTCTGCAG
GAGATTGTGTTGGGCGGGGCTTTCAACAAGCCTCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8061:5665..6150+

>mRNA_M-pyrifera_M_contig8061.18871.1 ID=mRNA_M-pyrifera_M_contig8061.18871.1|Name=mRNA_M-pyrifera_M_contig8061.18871.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig8061:5665..6150+ (Macrocystis pyrifera P11B4 male)
GTCATCAAGCAGCTACAGCTGACGTGCACCTCGGTTTGCAGCGACTGCCG
GGCGTCGTCCGTCTTCCATGTCCGAGTGGTGTCTCGGACCCCCAGGCGGC
TCTGGACAACTGCGCGCGGTCCCAATAGGCGCCGACGGAGTGGGAAAGGA
GCCGGCGTTCCGGGGCTTCCTCCACTGCGTGTGGGTCGACTCACGTTTGG
GGAGTACTACAACCGGGCGATAAGCGCGGTGGCGTTGCCCTCCGAACTCA
CCAAGGTCACGTTCGGAAAACGTTTCAACCAAGACTTGAAATGCGTGCGT
TGGCCTTCGACGCTTGCGGAGGTCAGGTTTGGGTGTAACTTTGACTCGCC
CATCGCCGGCATGACGTGGCCTACGGGGCTGCAGAGGGTTATGTTCGGGT
GCGGATTCAACCAGAGCATAGACGGCCTTCTGTGGCCAGCCGGTCTGCAG
GAGATTGTGTTGGGCGGGGCTTTCAACAAGCCTCTTGTCATCAAGCAGCT
ACAGCTGACGTGCACCTCGGTTTGCAGCGACTGCCGGGCGTCGTCCGTCT
TCCATGTCCGAGTGGTGTCTCGGACCCCCAGGCGGCTCTGGACAACTGCG
CGCGGTCCCAATAGGCGCCGACGGAGTGGGAAAGGAGCCGGCGTTCCGGG
GCTTCCTCCACTGCGTGTGGGTCGACTCACGTTTGGGGAGTACTACAACC
GGGCGATAAGCGCGGTGGCGTTGCCCTCCGAACTCACCAAGGTCACGTTC
GGAAAACGTTTCAACCAAGACTTGAAATGCGTGCGTTGGCCTTCGACGCT
TGCGGAGGTCAGGTTTGGGTGTAACTTTGACTCGCCCATCGCCGGCATGA
CGTGGCCTACGGGGCTGCAGAGGGTTATGTTCGGGTGCGGATTCAACCAG
AGCATAGACGGCCTTCTGTGGCCAGCCGGTCTGCAGGAGATTGTGTTGGG
CGGGGCTTTCAACAAGCCTCTT
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