mRNA_M-pyrifera_M_contig80600.18870.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80600.18870.1
Unique NamemRNA_M-pyrifera_M_contig80600.18870.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80600.18870.1 vs. uniprot
Match: D7G5M9_ECTSI (STI1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M9_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.840e-23
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:   76 GKIMNNPKAMEAFQKAQGSPKVMAAIQDVTQNGMGAIAKYRNDPEILAVIEELKAMF 246
            GK+MNNPKAMEAFQKAQ +  VMAAIQDVTQNGM A++KY++DPEILA+IEELK +F
Sbjct:   29 GKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 85
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BLAST of mRNA_M-pyrifera_M_contig80600.18870.1 vs. uniprot
Match: D7G4D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.440e-20
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:   76 GKIMNNPKAMEAFQKAQGSPKVMAAIQDVTQNGMGAIAKYRNDPEILAVIEELKAMF 246
            GK+MNNPKAMEAFQKAQ +  VMAAIQDVTQNGM A++KY++DPEILA+IEELK +F
Sbjct:  831 GKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 887
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80600.18870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5M9_ECTSI1.840e-2377.19STI1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4D5_ECTSI1.440e-2077.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80600contigM-pyrifera_M_contig80600:355..924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue4.7e-17
Seed eggNOG ortholog2880.D7G4D5
KEGG koko:K22262
Hectar predicted targeting categoryother localisation
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_009040.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.2532725-CDS-M-pyrifera_M_contig80600:354..4651622816711.2532725-CDS-M-pyrifera_M_contig80600:354..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80600 355..465 -
1692278134.4370933-CDS-M-pyrifera_M_contig80600:354..4651692278134.4370933-CDS-M-pyrifera_M_contig80600:354..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80600 355..465 -
1622816711.2652647-CDS-M-pyrifera_M_contig80600:786..9241622816711.2652647-CDS-M-pyrifera_M_contig80600:786..924Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80600 787..924 -
1692278134.449749-CDS-M-pyrifera_M_contig80600:786..9241692278134.449749-CDS-M-pyrifera_M_contig80600:786..924Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80600 787..924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80600.18870.1prot_M-pyrifera_M_contig80600.18870.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80600 355..924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80600.18870.1

>prot_M-pyrifera_M_contig80600.18870.1 ID=prot_M-pyrifera_M_contig80600.18870.1|Name=mRNA_M-pyrifera_M_contig80600.18870.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
GGAVGGRGGGEGGGWGGGGGMGDMLGKIMNNPKAMEAFQKAQGSPKVMAA
IQDVTQNGMGAIAKYRNDPEILAVIEELKAMF*
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mRNA from alignment at M-pyrifera_M_contig80600:355..924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80600.18870.1 ID=mRNA_M-pyrifera_M_contig80600.18870.1|Name=mRNA_M-pyrifera_M_contig80600.18870.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig80600:355..924- (Macrocystis pyrifera P11B4 male)
GGGGGGGCGGTGGGGGGGCGGGGCGGCGGGGAGGGAGGGGGCTGGGGGGG
GGGGGGGGGGATGGGTGACATGCTAGGGAAGATCATGAACAACCCGAAAG
CTATGGAGGCGTTTCAGAAGGCGCAAGGAAGTCCTAAGGTAAAGAAGAGA
TGTGGGGAAGGGGGGCTCGTACTCGTTTGTTGCTTGCCTTAGTCCTTTGA
CCACTACTATTACTACTACCACTAATACTATTACGCGGGGCCGTAGTAAA
TAGGACCAAATATTGTTAGTAAATATAGGTAAATATATAGGTTTTTGTGT
GTACCGTAGGTCCTATTTACTATGGCCCTCCGTAATAGTGCTGTTACTAC
TATTGATACCACTTCTATTACTTGTATGTGCGCTCTTAACAGCGCGGGAC
GTGTATCCTTTTCGTATTCGTTTTCGCTTTCATTTTCCAACTCTTCCCGC
ATCGTTAAGGTGATGGCCGCCATCCAAGACGTGACGCAGAACGGCATGGG
GGCTATCGCCAAGTACCGCAACGACCCAGAAATCCTTGCCGTCATCGAAG
AGCTCAAGGCCATGTTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80600:355..924-

>mRNA_M-pyrifera_M_contig80600.18870.1 ID=mRNA_M-pyrifera_M_contig80600.18870.1|Name=mRNA_M-pyrifera_M_contig80600.18870.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig80600:355..924- (Macrocystis pyrifera P11B4 male)
GGGGGGGCGGTGGGGGGGCGGGGCGGCGGGGAGGGAGGGGGCTGGGGGGG
GGGGGGGGGGATGGGTGACATGCTAGGGAAGATCATGAACAACCCGAAAG
CTATGGAGGCGTTTCAGAAGGCGCAAGGAAGTCCTAAGGGGGGGGCGGTG
GGGGGGCGGGGCGGCGGGGAGGGAGGGGGCTGGGGGGGGGGGGGGGGGAT
GGGTGACATGCTAGGGAAGATCATGAACAACCCGAAAGCTATGGAGGCGT
TTCAGAAGGCGCAAGGAAGTCCTAAGGTGATGGCCGCCATCCAAGACGTG
ACGCAGAACGGCATGGGGGCTATCGCCAAGTACCGCAACGACCCAGAAAT
CCTTGCCGTCATCGAAGAGCTCAAGGCCATGTTCTGAGTGATGGCCGCCA
TCCAAGACGTGACGCAGAACGGCATGGGGGCTATCGCCAAGTACCGCAAC
GACCCAGAAATCCTTGCCGTCATCGAAGAGCTCAAGGCCATGTTCTGA
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