mRNA_M-pyrifera_M_contig80434.18842.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80434.18842.1
Unique NamemRNA_M-pyrifera_M_contig80434.18842.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80434.18842.1 vs. uniprot
Match: A0A2R5G3W2_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3W2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.780e-17
Identity = 57/170 (33.53%), Postives = 79/170 (46.47%), Query Frame = 1 
Query:   10 VKEWTDEHRERGMAILKALSFDGRRALRAAAVAAAGRAPSVPIIL---VRKYEGVDEDALIDLAWDLPSDSAPEAFFVLESCGPEGGAQHRAGTWTRLLVDPPSAKAKRAPACRCVLRGLRPNTGYVFRLRALNAAGGSPYAVGVVAAPPARPPAPVCLRASDSTALLAW 510
            V +W+   R   +  L+AL+   R   R  A+   G +P  P++    V ++   D    + L W     S    F+VLESCG EG   HR   +  +  DPPSA + +A A    LRGL     Y+FR+RA N  G SP+        PA P  PV    + +T  LAW
Sbjct:  766 VSKWSLSERMSALEGLEALAETNREISRTLALQTQGESPLCPVLELGPVHEFPEADRQTALMLRWRPREGSMFPTFYVLESCGREGSKSHRQHEFKEIFRDPPSAASGKAQAGEFTLRGLEAGVRYLFRIRAFNGYGSSPFTYASFLTAPAPPAVPVVKSLAPTTLTLAW 935
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80434.18842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2R5G3W2_9STRA2.780e-1733.53Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80434contigM-pyrifera_M_contig80434:210..908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog112098.XP_008620851.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF-hand domain pair
EggNOG OGs29989@1,2RG9Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size510
Cds size510
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.1703796-CDS-M-pyrifera_M_contig80434:209..3721622816710.1703796-CDS-M-pyrifera_M_contig80434:209..372Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80434 210..372 +
1692278133.8909945-CDS-M-pyrifera_M_contig80434:209..3721692278133.8909945-CDS-M-pyrifera_M_contig80434:209..372Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80434 210..372 +
1622816710.1831648-CDS-M-pyrifera_M_contig80434:561..9081622816710.1831648-CDS-M-pyrifera_M_contig80434:561..908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80434 562..908 +
1692278133.9045374-CDS-M-pyrifera_M_contig80434:561..9081692278133.9045374-CDS-M-pyrifera_M_contig80434:561..908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80434 562..908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80434.18842.1prot_M-pyrifera_M_contig80434.18842.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80434 210..908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80434.18842.1

>prot_M-pyrifera_M_contig80434.18842.1 ID=prot_M-pyrifera_M_contig80434.18842.1|Name=mRNA_M-pyrifera_M_contig80434.18842.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MPTVKEWTDEHRERGMAILKALSFDGRRALRAAAVAAAGRAPSVPIILVR
KYEGVDEDALIDLAWDLPSDSAPEAFFVLESCGPEGGAQHRAGTWTRLLV
DPPSAKAKRAPACRCVLRGLRPNTGYVFRLRALNAAGGSPYAVGVVAAPP
ARPPAPVCLRASDSTALLAW
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mRNA from alignment at M-pyrifera_M_contig80434:210..908+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80434.18842.1 ID=mRNA_M-pyrifera_M_contig80434.18842.1|Name=mRNA_M-pyrifera_M_contig80434.18842.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=699bp|location=Sequence derived from alignment at M-pyrifera_M_contig80434:210..908+ (Macrocystis pyrifera P11B4 male)
ATGCCCACTGTGAAAGAGTGGACTGATGAACATAGAGAACGAGGGATGGC
GATTCTCAAAGCATTGTCCTTTGATGGTCGTCGTGCACTTCGTGCTGCTG
CTGTTGCAGCTGCCGGACGTGCCCCATCTGTTCCAATTATTTTAGTGCGA
AAGTATGAAGGAGGTGCACCTCGTCCAGAACCACCACCACTTACTCCTGA
AATTGAACTTGAAGAAAGTTTGTTGTGTGCCAAACTAGGCCGTGATGCAG
CTGCATCAGGGTCTGGTGCATCTTCATCGTCAAAAACTGCTGAAGATGGA
GAAGATGAAGATCCAAGGATCATTCGGGCCAAAGCCAAGGCACGTGCGCT
AGTGGATGAAGATGCATTGATTGATTTGGCATGGGATCTTCCTTCTGATT
CAGCACCAGAAGCATTCTTTGTGTTGGAATCTTGTGGACCAGAAGGAGGT
GCTCAACATCGAGCTGGAACATGGACACGTCTTCTCGTTGACCCTCCATC
AGCAAAGGCAAAACGAGCACCAGCATGTCGGTGTGTGCTCCGTGGACTGC
GACCAAATACTGGTTATGTGTTTCGTCTTCGTGCACTCAACGCTGCTGGT
GGGTCTCCATATGCAGTTGGTGTTGTTGCAGCTCCTCCAGCAAGGCCACC
AGCACCTGTTTGTCTTCGTGCATCAGATTCCACTGCACTCTTGGCGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80434:210..908+

>mRNA_M-pyrifera_M_contig80434.18842.1 ID=mRNA_M-pyrifera_M_contig80434.18842.1|Name=mRNA_M-pyrifera_M_contig80434.18842.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig80434:210..908+ (Macrocystis pyrifera P11B4 male)
ATGCCCACTGTGAAAGAGTGGACTGATGAACATAGAGAACGAGGGATGGC
GATTCTCAAAGCATTGTCCTTTGATGGTCGTCGTGCACTTCGTGCTGCTG
CTGTTGCAGCTGCCGGACGTGCCCCATCTGTTCCAATTATTTTAGTGCGA
AAGTATGAAGGAGATGCCCACTGTGAAAGAGTGGACTGATGAACATAGAG
AACGAGGGATGGCGATTCTCAAAGCATTGTCCTTTGATGGTCGTCGTGCA
CTTCGTGCTGCTGCTGTTGCAGCTGCCGGACGTGCCCCATCTGTTCCAAT
TATTTTAGTGCGAAAGTATGAAGGAGTGGATGAAGATGCATTGATTGATT
TGGCATGGGATCTTCCTTCTGATTCAGCACCAGAAGCATTCTTTGTGTTG
GAATCTTGTGGACCAGAAGGAGGTGCTCAACATCGAGCTGGAACATGGAC
ACGTCTTCTCGTTGACCCTCCATCAGCAAAGGCAAAACGAGCACCAGCAT
GTCGGTGTGTGCTCCGTGGACTGCGACCAAATACTGGTTATGTGTTTCGT
CTTCGTGCACTCAACGCTGCTGGTGGGTCTCCATATGCAGTTGGTGTTGT
TGCAGCTCCTCCAGCAAGGCCACCAGCACCTGTTTGTCTTCGTGCATCAG
ATTCCACTGCACTCTTGGCGTGGTGGATGAAGATGCATTGATTGATTTGG
CATGGGATCTTCCTTCTGATTCAGCACCAGAAGCATTCTTTGTGTTGGAA
TCTTGTGGACCAGAAGGAGGTGCTCAACATCGAGCTGGAACATGGACACG
TCTTCTCGTTGACCCTCCATCAGCAAAGGCAAAACGAGCACCAGCATGTC
GGTGTGTGCTCCGTGGACTGCGACCAAATACTGGTTATGTGTTTCGTCTT
CGTGCACTCAACGCTGCTGGTGGGTCTCCATATGCAGTTGGTGTTGTTGC
AGCTCCTCCAGCAAGGCCACCAGCACCTGTTTGTCTTCGTGCATCAGATT
CCACTGCACTCTTGGCGTGG
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