mRNA_M-pyrifera_M_contig804.18832.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig804.18832.1 vs. uniprot
Match: D8LKW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW2_ECTSI) HSP 1 Score: 796 bits (2055), Expect = 1.530e-262 Identity = 620/1404 (44.16%), Postives = 758/1404 (53.99%), Query Frame = 1
Query: 1 MKAQRSSRRTSKRSKF--TASAPAGPSLSQQAEALRTRPGDFNVEDLRDIGRQIELLGLRALSSSLTPDLHRHFQTALLALVAQSGFTKKRRGYRQHIVQALADAASGPVPPCALLPILRAKETGPSATDLVMEVLETVAGNEHDDSSGSS---GAKPKRAILELLHHVVAEVVTSGVAKKGKRAAQGPPAHLLALLVQSCSALPEYMLVFSKDLLLLVESRSSATRKLSLAVLRVILTHRRGQHRGTQ------GPALAAVLRLSRLDGDASVRCSAFDIVAEYHGERNLAEEIKQYHQEEGFFNETDNDFASDPDHNT-----------RNEPER--------QQAGKTFALPKNENYSKTAEIKVEPC-PGAGTHAGD--------DMDFAAARTSTV-------------REDEAGD--VASLEHA--------RERGAFY---------------PWAVGGVVLSSLSVSVDALLTDVSKNVRAKALACSLCILKTHGGSIEP---ACLD-----GGAAGAGGVSCGLNTLETSLQAVAKGAWRALEAVVTDSSG--TMQACLGVTGGG-RIRRAADAARDLLLLPCVNASPVDIIICFARCGIAAGGGQGAAVVTAEAKRALREIANVKLCADIDSLLRAVSVVMTADCNGEDGDDSAET--FGDDTAGGALPEGCTSNSLSEVLCEVLAGIDSEVIVSLLRDAVEMYTQGEETGWREGRGEMHAAHKVPILLRTLSILGEASVASKPQTKGQTEVHQGGGSRTCDTAL----------------ILAESQHLFWRRLGRLMEEVERHGNGERGGRQCDSPDELQPSNSQSFGAGGTMSGGGGAEVNDVRGGFDVLIK-RAEKTTADSELPELLGIFRLLASRSLLPRDNGMALEALVFPSALSRRRLIRPAIGLALALEQPRRVLLSSLAILQDASFSRSSTDLGRACDYVRLVGVLARENSSFIAAHVREQHGRGRIRICFRRAFSRSGEDLPRKDRKEGDDGDDYMARVSNRQAMETEIRRLREASVTSDGMLSCYTPFLLAIVQRRVAESAAKTPSAVEQADATLRSGDSDGGRDDDVSTEDGNARRSVENGGEQKNHGTSDG-----SSSPSTLCAEALWALSEYAVLSPGLASAEVLPLAAALAGDITECPQIRAAAVCTLTRRELATDEIAAHACGLLGDKNPCLRQKVLRRLGVLMKESRIKTAHLSRFALLLADADEKVRQTAQGLFIDHLQPRPDSVCRCLFETYFTLDAAEGVKRQVLEALIIVSKRAAPGLGLGALGGALMRRTAETGDEDAAFFLSSVPPTIESFEVAEVALRRGQLAQAPLETISLAASHFAKRAHR-RGSAMAAAXXXXXXXXXXXXXSGGLDLLPTTQALAMAERIGSLSGR 3873
MK +RS+R S+RS T + SL QQ EALRTR + +V+DLR+IGRQIEL L + LHR + LL LVAQ GF KKR+GYRQH+V ALA+AASGPVPP ALLPILRAKETGP+ATDL +E+L+ + + G S K A+++LLHHVVAEVVTSGV K G+R A+GPPAHL++ LV + S LPEY LVF+KDLL+L ES SS RK+SLA+L IL H G+ G Q PALAAVLRLSR DGDA+VR SAFD VA++ GE E Y Q + D+D +SD D T RN E AG + ++T E+++ P GA HAGD A ART R+ GD V S +H RE GA PWAVGG + SSLS + +ALLTD SK VRAKALAC L IL+ HGG+I+P +C + G+A A GVS + +ET L AVAKGA ALE + D++G T+QA L TGGG R R+AAD AR LL+LPC+ +SPVD+++C+ARC +A G G+G AV EAKRALREIA CADI L +AVSV+M AD + +D + F D T G + P LSEVLCEVLAG+DS I SLL DA+E Y +E R+ G AA P+LLRTL++L EA+ +K + Q GGS + LA SQ LFWRRL + ME++ER GE G + D Q G G V GG R+ + SEL ELL +F+LLA+RSLL +NG ALEALVFP+ALSRRR ACDYVRL+GVLAREN+SFIAAH+REQ+ R SR GE+ + + G+D DYMA VSNR+AM A Q + R DGG+ + A E+ G+ + + G SS P LC EALWALSEYAVLS GLA+AEVLPLA LA D E PQ+R AAV LTRRELATDEIAAHAC LL D+NPCLR++VL RLG L+KES RCLFETYFTLDA E VKR+VL+ L+ V++ AAPG GL +LG AL+R+ AE GD +AAFFLS VPPT+ SFE AEVA RRGQLAQ+P TISL A+HF++ A R GS++A GG L QAL MA RIGSL+ R
Sbjct: 1 MKPKRSTRVGSRRSAASNTRHLVSSSSLGQQVEALRTRADNLSVDDLREIGRQIEL-ALPGEADLREVGLHRTVRAVLLPLVAQPGFAKKRKGYRQHLVHALAEAASGPVPPSALLPILRAKETGPAATDLTLEILQRIIRKADEGGGGGSIRSNDTSKNAVIDLLHHVVAEVVTSGVTKGGRRGAKGPPAHLISFLVNAFSTLPEYALVFAKDLLVLTESSSSPARKMSLAILASILGH--GRELGAQCGGTILDPALAAVLRLSRSDGDATVRSSAFDSVAKFIGEV----ESTLYRQRL----DDDDDTSSDLDDGTPSGDVLAHQQPRNTAETLTDDDSTGSGAGGGRGVTHGARATETMEMEIAPRGDGAANHAGDADACPLSEKRPSATARTPAACTQMGAMHGATSGRQSGEGDTPVTSRQHTTGHAHRETREAGAASEGNRGQRRKAKVSAGPWAVGGALQSSLSAAAEALLTDGSKAVRAKALACLLRILEVHGGTIKPRGASCENTTGDKAGSAAAPGVS---SRVETILSAVAKGALAALEPLAGDNTGGPTIQASLNSTGGGGRHRKAADTARALLVLPCIESSPVDLVMCYARCRVAPGVGEGEAVGATEAKRALREIAQATFCADIRKLWKAVSVIMAADERRQGLEDGSANIDFADTTEGASFP-------LSEVLCEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRDG---AAASAPVLLRTLALLAEATGHAKNGVDERNGARQPGGSSNRERLAGRSGQHGAGDEEEQLRTLAGSQGLFWRRLEQRMEDIERDKRGEETGGRGVEGDRGQ-----------LRRRGVGVSVEQYHGGXXXXXXXRSAASDTISELSELLRMFQLLATRSLLSPENGAALEALVFPAALSRRR----------------------------------------ACDYVRLIGVLARENASFIAAHIREQYSA--------RCLSRPGEE---ESAENGED--DYMAGVSNREAMGAATTAEEGEXXXXXXXXXXXXXXXXXXXXDGDCGGARVGSRGDAQDEMQYRMAQQDGGKVE--------ATVFREDVGQDRGATAAAGVSLPASSCPRALCTEALWALSEYAVLSAGLAAAEVLPLAERLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCLRREVLVRLGQLIKES-----------------------------------------RCLFETYFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGSALVRKVAEAGDSEAAFFLSLVPPTVNSFEAAEVAHRRGQLAQSPHGTISLVAAHFSRGAQRGAGSSLATTASIAGR--------GGGAPLSKAQALEMAARIGSLTSR 1259
BLAST of mRNA_M-pyrifera_M_contig804.18832.1 vs. uniprot
Match: A0A6H5KWW9_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW9_9PHAE) HSP 1 Score: 339 bits (870), Expect = 5.650e-100 Identity = 221/402 (54.98%), Postives = 260/402 (64.68%), Query Frame = 1
Query: 2800 MLSCYTPFLLAIVQRRVAESAAKTPSAVEQADATLRS--------------------GDSDGGRDDDVSTEDGNARRSV------ENGGE------QKNHGTSDG-----------SSSPSTLCAEALWALSEYAVLSPGLASAEVLPLAAALAGDITECPQIRAAAVCTLTRRELATDEIAAHACGLLGDKNPCLRQKVLRRLGVLMKESRIKTAHLSRFALLLADADEKVRQTAQGLFIDHLQPRPDSVCRCLFETYFTLDAAEGVKRQVLEALIIVSKRAAPGLGLGALGGALMRRTAETGDEDAAFFLSSVPPTIESFEVAEVALRRGQLAQAPLETISLAASHFAKRAHR-RGSAMAAAXXXXXXXXXXXXXSGGLDLLPTTQALAMAERIGSLSGR 3873
MLSCYTPFLLAIV+RRVA++AA E+ AT G +DG D+ G+A ++GG+ +K+ G G SS P LC EAL ALSEYAVLS GLA+AEVLPLA LA D E PQ+R AAV LTRRELATDEIAAHAC LL D+NPC+R++VL RLG LMKESRIKT HLSRFALLL D E VRQ AQ +FIDHLQPRPD+VCRCLFET+FTLDA E VKR+VL+ L+ V++ AAPG GL +LGGAL+R+ AETGD +AAFFLS VPPT+ SFE AEVALRRGQLAQ+P TI L A+HF++ A R GS++A GG L QAL MA +IGSL+ R
Sbjct: 1 MLSCYTPFLLAIVRRRVADTAAARNVTAEKGAATKAEXXXXXXXXXXXXXXXXASAGGAADGDCDEARVGSGGDAHDETRLHVVQQDGGKVEATDFRKDGGQGRGATTAASVSLPASSCPRALCTEALRALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCVRREVLVRLGQLMKESRIKTGHLSRFALLLVDVSEGVRQAAQKVFIDHLQPRPDTVCRCLFETFFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGGALVRKAAETGDSEAAFFLSLVPPTVNSFEAAEVALRRGQLAQSPHATIFLVATHFSRGAQRGAGSSLA--------ITASVAGRGGGAPLSKAQALEMAAQIGSLASR 394
BLAST of mRNA_M-pyrifera_M_contig804.18832.1 vs. uniprot
Match: A0A6H5L3C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C3_9PHAE) HSP 1 Score: 289 bits (739), Expect = 2.480e-79 Identity = 298/844 (35.31%), Postives = 375/844 (44.43%), Query Frame = 1
Query: 619 SKDLLLLVESRSSATRKLSLAVLRVILTHRRGQHRGTQ------GPALAAVLRLSRLDGDASVRCSAFDIVAEYHGERNLAEEIKQYHQEEGFFNETDNDFASDPDHNTRNEP--ERQQAGKTF-----------------ALPKNENYSKTAEIKVEPCP-GAGTHAGD--------DMDFAAART-------------STVREDEAG--DVASLEHARERG-----------------------AFYPWAVGGVVLSSLSVSVDALLTDVSKNVRAKALACSLCILKTHGGSIEP--ACLD-------GGAAGAGGVSCGLNTLETS---------LQA-------------------------------------------------------------------------VAKGAWRALEAVVTDSSG--TMQACLGVTGGG-RIRRAADAARDLLLLPCVNASPVDIIICFARCGIAAGGGQGAAVVTAEAKRALREIANVKLCADIDSLLRAVSVVMTADCNGEDGDDSAET--FGDDTAGGALPEGCTSNSLSEVLCEVLAGIDSEVIVSLLRDAVEMYTQGEETGWREGRGEMHAAHKVPILLRTLSILGEASVASKPQTKGQTEVHQGGGSRTCDTALILAESQHLFWRRLGRLMEEVERHGNGERGGRQCDSPDELQPSNSQSFGAGGTMSGGGGAEVNDVRGGFDVLIK--------RAEKTTADSELPELLGIFRLLASRSLLPRDNGMALEALVFPSALSRRRLIRPAIGLALALEQPRRVLLSSLAILQDASFSRSSTDLG-RACDYVRLVGVLARENSSFIAAHVREQH 2619
++DLL L ES SS RK+SLAVL IL H G+ G Q PALAA+LRL+R DGDA+VR SAFD +A++ G+ ++ H + D +SD D T + QQ+ T + ++T ++++ P GA HAGD + A ART ++ R+ G V S +H +R + PW +GG + SSLS + +ALLTD SK VRAKALACSL IL+ HG +I+P AC + G AAG G S TL T+ L A VAKGA ALEA+ D+ G T QA L TGGG R R+AAD AR LL+LPCV SPV++++C+ARC +A+G G+G AV EAKRALREIA ADI LL+AVSV+M AD + +D + F D T G + SLSEVL EVLAG+DS I SLL DA+E Y +E R+ GE T + S + LA SQ LFWRRL + ME++ER E G Q D Q G G + GG R+ A SEL ELL IF+LLA+ SLL N ALEALVFP+ALSRRRLI S +I SF+ G RACDYVRL+GVLAREN+SFIAAHVREQ+
Sbjct: 11 TQDLLALTESSSSPARKMSLAVLAAILEH--GRELGAQCGGTILDPALAALLRLARSDGDATVRSSAFDSIAKFIGQMGTTLYRQRLHDND--------DTSSDLDDGTPSGDVLAHQQSRSTAEALTDXXXXXXXXXXXRGVTHGARATETMDMEIAPSERGAADHAGDADACPLSEKIPSATARTPMARTQMGAMHGATSGRQSRQGRTPVISPQHTSDRAHRATRGAGAPSEGNRGQRREAKVSAGPWTMGGALQSSLSAAAEALLTDGSKAVRAKALACSLLILEVHGDTIQPRGACCENTAGDEAGSAAGPGVSSRVERTLSTASSRCGGILILMAFLRSQRRLPRSSVDFASRPCMSGIAILCPSLRKRDLRQRCFPYTRGSFTWVHLSKSLVVQEPFLPLSTLCRVQVAKGALLALEALAGDNHGGSTTQASLNSTGGGGRHRKAADTARALLILPCVEPSPVELVMCYARCRVASGVGEGEAVGATEAKRALREIAQATFSADIRKLLKAVSVIMAADERRQGLEDGSANINFADTTEGASF-------SLSEVLGEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRDGE-------------------------------TRKYSNYNSDEEEQLRTLAGSQGLFWRRLEQRMEDIERDERREESGWQGAQGDRGQ-----------LRRRGLGLSIEQYHGGGGXXXXXXXXXHGHRSAAPDAVSELSELLRIFQLLATYSLLSAKNSAALEALVFPAALSRRRLI------------------VSRSIDIHNSFAFLVLVWGSRACDYVRLIGVLARENASFIAAHVREQY 777 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig804.18832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig804.18832.1 >prot_M-pyrifera_M_contig804.18832.1 ID=prot_M-pyrifera_M_contig804.18832.1|Name=mRNA_M-pyrifera_M_contig804.18832.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=1291bp MKAQRSSRRTSKRSKFTASAPAGPSLSQQAEALRTRPGDFNVEDLRDIGRback to top mRNA from alignment at M-pyrifera_M_contig804:13102..26086- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig804.18832.1 ID=mRNA_M-pyrifera_M_contig804.18832.1|Name=mRNA_M-pyrifera_M_contig804.18832.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=12985bp|location=Sequence derived from alignment at M-pyrifera_M_contig804:13102..26086- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig804:13102..26086- >mRNA_M-pyrifera_M_contig804.18832.1 ID=mRNA_M-pyrifera_M_contig804.18832.1|Name=mRNA_M-pyrifera_M_contig804.18832.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=7746bp|location=Sequence derived from alignment at M-pyrifera_M_contig804:13102..26086- (Macrocystis pyrifera P11B4 male)back to top |