mRNA_M-pyrifera_M_contig80375.18829.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80375.18829.1
Unique NamemRNA_M-pyrifera_M_contig80375.18829.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80375.18829.1 vs. uniprot
Match: A0A6M1ZAX5_9BACT (Uncharacterized protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZAX5_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 9.280e-8
Identity = 31/90 (34.44%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:   61 LDSLGRRFERVKLVLFENDSTDGTTEALALWAQEDDRVVVLSKVLGAKAAIRDRSSRTEKLARYRNEYLDEVSRPEYAAYEAMLVLDTDF 330
            +++LG RF    ++++EN+STDGT      WAQ +  V+ +S+++     I+   SRTE++AR RN  L      EY+ ++ ++++D DF
Sbjct:   40 IEALGNRFADYAVIIYENNSTDGTARCYQEWAQTNPHVIFISEMV---PDIQLSPSRTERIARARNRVLSVARGEEYSEFDYLIMVDLDF 126
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BLAST of mRNA_M-pyrifera_M_contig80375.18829.1 vs. uniprot
Match: A0A2D7CPV0_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7CPV0_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 1.170e-5
Identity = 51/170 (30.00%), Postives = 82/170 (48.24%), Query Frame = 1 
Query:    4 VVVGLMY-NSVNTIVTLRAILDSLGRRFERVKLVLFENDSTDGTTEALALWAQEDDRVVVLS-KVLGAK----AAIRDRS------SRTEKLARYRNEYLDEVSRPEYAAYEAMLVLDTDFSNTRINPNAVVAAAR---DVLRGE-VEFVCALGQYSTRLFWDTFAYEDA 465
            +V+GL+  N V  +   +  ++ L R F   ++++FENDSTD T   +  WA+ D  V +LS + LG K     A   +S      SR+EK+A YR E L+EV    Y  ++     D D S        +   +R   D++ G  + F+     +S    +D FA+ D+
Sbjct:  173 IVIGLLTKNGVKHVSKTKEKIERLCRHFADYRVIIFENDSTDNTRHVIQAWAETDPHVTLLSCEHLGDKDCKLQATDPKSFGYTSFSRSEKMAGYRQEILNEVQ-THYTDWDYFCTFDFDLSGAFFVDGFLTTFSREDWDMVYGNGITFIPLPFLHSKAYAYDCFAFIDS 341
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BLAST of mRNA_M-pyrifera_M_contig80375.18829.1 vs. uniprot
Match: A0A6C0K736_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K736_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 5.480e-5
Identity = 44/147 (29.93%), Postives = 68/147 (46.26%), Query Frame = 1 
Query:   61 LDSLGRRFERVKLVLFENDSTDGTTEALALWAQEDDRVVVLSKVLGAKAAIR-----------DRSSRTEKLARYRNEYLDEVSRPEYAAYEAMLVLDTDFSNTRINPNAVVAAARDVLRGEVEFVCALGQYSTRLF----WDTFAY 456
            ++ LG  F+  ++V+FENDS DGT + L  W +++ RV +LS     +   R           + S R +KL  +R + L  V +  YA Y+  LV+D D          +   ARD    + + V A G  +  LF    +D  AY
Sbjct:  213 IEGLGDLFQDYRVVIFENDSNDGTRDLLQAWHRDNPRVQILSCCEEGQCECRLSVQHLHQMGMESSQRMDKLRHFRQKVLRYVQQ-HYADYDYYLVIDFDLPGAVYRDGFLSTFARD----DFDMVFARGLTTFPLFSTALYDGIAY 354
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80375.18829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6M1ZAX5_9BACT9.280e-834.44Uncharacterized protein n=1 Tax=Chlamydiae bacteri... [more]
A0A2D7CPV0_9PROT1.170e-530.00Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A6C0K736_9ZZZZ5.480e-529.93Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80375contigM-pyrifera_M_contig80375:267..767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.1055887-CDS-M-pyrifera_M_contig80375:266..7491622816709.1055887-CDS-M-pyrifera_M_contig80375:266..749Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80375 267..749 -
1692278133.145206-CDS-M-pyrifera_M_contig80375:266..7491692278133.145206-CDS-M-pyrifera_M_contig80375:266..749Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80375 267..749 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.1167953-UTR-M-pyrifera_M_contig80375:749..7671622816709.1167953-UTR-M-pyrifera_M_contig80375:749..767Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80375 750..767 -
1692278133.1570992-UTR-M-pyrifera_M_contig80375:749..7671692278133.1570992-UTR-M-pyrifera_M_contig80375:749..767Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80375 750..767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80375.18829.1prot_M-pyrifera_M_contig80375.18829.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80375 267..749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80375.18829.1

>prot_M-pyrifera_M_contig80375.18829.1 ID=prot_M-pyrifera_M_contig80375.18829.1|Name=mRNA_M-pyrifera_M_contig80375.18829.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MYNSVNTIVTLRAILDSLGRRFERVKLVLFENDSTDGTTEALALWAQEDD
RVVVLSKVLGAKAAIRDRSSRTEKLARYRNEYLDEVSRPEYAAYEAMLVL
DTDFSNTRINPNAVVAAARDVLRGEVEFVCALGQYSTRLFWDTFAYEDAL
LSKQPADFGAK
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mRNA from alignment at M-pyrifera_M_contig80375:267..767-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80375.18829.1 ID=mRNA_M-pyrifera_M_contig80375.18829.1|Name=mRNA_M-pyrifera_M_contig80375.18829.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig80375:267..767- (Macrocystis pyrifera P11B4 male)
CTGGTTGTAGTTGGATTGATGTATAACTCGGTGAACACAATAGTAACATT
GCGTGCTATTTTAGATTCACTGGGACGTCGTTTCGAAAGAGTGAAATTGG
TCTTGTTCGAAAATGATTCTACCGATGGCACAACGGAAGCCTTGGCACTA
TGGGCCCAAGAAGATGATCGTGTTGTAGTACTAAGCAAAGTCTTGGGGGC
AAAAGCGGCAATTCGCGACCGTAGTTCACGTACAGAGAAACTTGCGAGAT
ACCGGAATGAGTATTTGGATGAAGTCTCTCGTCCAGAGTATGCCGCTTAT
GAGGCAATGCTAGTTCTGGATACAGACTTTTCCAACACTCGTATCAACCC
GAATGCGGTAGTAGCAGCAGCTCGGGATGTATTACGAGGAGAGGTTGAAT
TTGTGTGCGCGCTTGGGCAATACAGCACACGGTTGTTTTGGGATACATTT
GCCTACGAAGACGCACTGTTGTCGAAACAACCAGCTGATTTTGGTGCAAA
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80375:267..767-

>mRNA_M-pyrifera_M_contig80375.18829.1 ID=mRNA_M-pyrifera_M_contig80375.18829.1|Name=mRNA_M-pyrifera_M_contig80375.18829.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig80375:267..767- (Macrocystis pyrifera P11B4 male)
ATGTATAACTCGGTGAACACAATAGTAACATTGCGTGCTATTTTAGATTC
ACTGGGACGTCGTTTCGAAAGAGTGAAATTGGTCTTGTTCGAAAATGATT
CTACCGATGGCACAACGGAAGCCTTGGCACTATGGGCCCAAGAAGATGAT
CGTGTTGTAGTACTAAGCAAAGTCTTGGGGGCAAAAGCGGCAATTCGCGA
CCGTAGTTCACGTACAGAGAAACTTGCGAGATACCGGAATGAGTATTTGG
ATGAAGTCTCTCGTCCAGAGTATGCCGCTTATGAGGCAATGCTAGTTCTG
GATACAGACTTTTCCAACACTCGTATCAACCCGAATGCGGTAGTAGCAGC
AGCTCGGGATGTATTACGAGGAGAGGTTGAATTTGTGTGCGCGCTTGGGC
AATACAGCACACGGTTGTTTTGGGATACATTTGCCTACGAAGACGCACTG
TTGTCGAAACAACCAGCTGATTTTGGTGCAAAAATGTATAACTCGGTGAA
CACAATAGTAACATTGCGTGCTATTTTAGATTCACTGGGACGTCGTTTCG
AAAGAGTGAAATTGGTCTTGTTCGAAAATGATTCTACCGATGGCACAACG
GAAGCCTTGGCACTATGGGCCCAAGAAGATGATCGTGTTGTAGTACTAAG
CAAAGTCTTGGGGGCAAAAGCGGCAATTCGCGACCGTAGTTCACGTACAG
AGAAACTTGCGAGATACCGGAATGAGTATTTGGATGAAGTCTCTCGTCCA
GAGTATGCCGCTTATGAGGCAATGCTAGTTCTGGATACAGACTTTTCCAA
CACTCGTATCAACCCGAATGCGGTAGTAGCAGCAGCTCGGGATGTATTAC
GAGGAGAGGTTGAATTTGTGTGCGCGCTTGGGCAATACAGCACACGGTTG
TTTTGGGATACATTTGCCTACGAAGACGCACTGTTGTCGAAACAACCAGC
TGATTTTGGTGCAAAA
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