mRNA_M-pyrifera_M_contig80322.18821.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80322.18821.1
Unique NamemRNA_M-pyrifera_M_contig80322.18821.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Match: UPI0018D7B758 (fibrocystin-L-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7B758)

HSP 1 Score: 63.5 bits (153), Expect = 3.860e-9
Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 1
Query:    1 VTSVSPQNISLAGGTEVTIMGSGFPTARSDAVEVTLELESGDVACNIQSISYNQIRC----RSEPVSAFSTLDAGHVLVKLPGQVPETRTLLNAISAGESLTPVLLSVSPARVSAAGGTLVTILG 363
            VT ++P + SLAGGT VTI GSGF   + D V V++    GD  CNI+S+ Y++I+C     +E  ++ +  D   V V + GQ   ++ L NA +   + TP++  + P +    GG  +TI G
Sbjct:  949 VTGINPSSGSLAGGTSVTITGSGFGKEK-DNVTVSV----GDQTCNIESVIYSEIQCVIALNTEAPASSTPAD---VTVTVNGQ---SKALSNAFTFNPANTPIITDIEPKKSPVEGGGELTITG 1062          
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Match: UPI000854C4E3 (fibrocystin-L n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854C4E3)

HSP 1 Score: 60.5 bits (145), Expect = 4.600e-8
Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 1
Query:    1 VTSVSPQNISLAGGTEVTIMGSGFPTARSDAVEVTLELESGDVACNIQSISYNQIRCRSEPVSAFSTLDAGHVLVKLPGQVPETRTLLNAISAGESLTPVLLSVSPARVSAAGGTLVTILGHN 369
            V+S++P   SLAGGT VTI+GSGF      AVEV      G +AC+I  ++   I+CR+    +        V+V   G     RTL NA S      P + ++SP   S  GGT +TILG +
Sbjct: 1205 VSSITPSEGSLAGGTPVTILGSGF--GGDSAVEV------GGIACSIIFVNLTMIQCRT----SMGIGGLADVVVFTGGY---NRTLQNAFSFTSVSAPNITNISPNISSVLGGTTLTILGFS 1312          
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Match: A0A6P4Y2K7_BRABE (fibrocystin-L-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y2K7_BRABE)

HSP 1 Score: 59.3 bits (142), Expect = 1.160e-7
Identity = 48/121 (39.67%), Postives = 61/121 (50.41%), Query Frame = 1
Query:    1 VTSVSPQNISLAGGTEVTIMGSGFPTARSDAVEVTLELESGDVACNIQSISYNQIRCRSEPVSAFSTLDAGHVLVKLPGQVPETRTLLNAISAGESLTPVLLSVSPARVSAAGGTLVTILG 363
            +TSVSP+  S  GGT VTI GSGF TA +D   V +    G   C IQS++YN+I C ++P SA  T D     V     +  T       S  +S TP  +S+ P   S A  T  TI G
Sbjct:  349 ITSVSPEQGSTEGGTTVTISGSGF-TAGADGTTVRI----GSSGCVIQSVTYNEIICTTQPASAL-TRDVVVTQVVNGNSLGATCDGTCQFSHRDSATPRAVSIEPTTASGAS-TDFTITG 462          
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Match: A0A8B7YM92_ACAPL (fibrocystin-L-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YM92_ACAPL)

HSP 1 Score: 57.0 bits (136), Expect = 7.260e-7
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    1 VTSVSPQNISLAGGTEVTIMGSGFPTARSDAVEVTLELESGDVACNIQSISYNQIRC--RSEPVSAFSTLDAGHVLVKLPGQVPETRTLLNAISAGESLTPVLLSVSPARVSAAGGTLVTILG 363
            +T+++P   SLAGGT+VTI GSGF   + D     +++  G  AC I S+SY++I C       +  S++DA  V V + G    ++ L ++ +   + TP + S+SP +    GG  +TI G
Sbjct:  793 LTTINPTFGSLAGGTKVTITGSGFSQDKED-----VDVSVGTQACRIDSVSYSEIICVIALNAEAPDSSVDAD-VTVTVNGV---SKDLSSSFTFDPTKTPTITSISPTKSHVDGGDELTITG 906          
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Match: A0A7M7NVK1_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NVK1_STRPU)

HSP 1 Score: 56.2 bits (134), Expect = 1.390e-6
Identity = 45/128 (35.16%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    1 VTSVSPQNISLAGGTEVTIMGSGFPTARSDAVEVTLELESGDVACNIQSISYNQIRC-----RSEPVSAFSTLDAGHVLVKLPGQVPETRTLLNAISAGESLTPVLLSVSPARVSAAGGTLVTILGHN 369
            V++VSP   S AGGTEVTI G G    R       +E+  G   C + S SY++I C             ST DA  V++ + G +P   T+ +  +   SLTP + ++SPA  S  GG  +TI G +
Sbjct: 1211 VSTVSPDEGSAAGGTEVTISGYGLGGDRD------IEVSIGSNNCEVISASYDEIVCVIVVESGSRXXXXSTTDAD-VVINIDGAMP--LTVNDGFTFDTSLTPTVSNLSPATSSVVGGDDLTISGSS 1329          
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Match: A0A8J1TPR0_OWEFU (Ofus.G052381 protein (Fragment) n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TPR0_OWEFU)

HSP 1 Score: 55.5 bits (132), Expect = 2.570e-6
Identity = 41/129 (31.78%), Postives = 67/129 (51.94%), Query Frame = 1
Query:    7 SVSPQNISLAGGTEVTIMGSGFPTARSDAVE-VTLELESGDVACNIQSISYNQIRCRSEPVSAFSTLDA--GHVLVKLPGQVPETRTLLNAISAGESLTPVLLSVSPARVSAAGGTLVTILGHNLVDAN 384
            SVSP  +S AGGT VT+ G GFP   +   E V L++  GD  C+I + + + + C S   ++    DA  G V V + G+   ++  L   +     TP++ SV P++VS  GG ++ + G     ++
Sbjct:  550 SVSPDKVSSAGGTLVTVCGDGFPNNTTTCKETVQLKISGGD--CSILTCNGSCLTCVSPSQASRHRRDALEGSVTVSVGGKTTISKQRLGFDTMA---TPMVTSVQPSKVSVRGGDILQLKGSGFTSSS 673          
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Match: A0A1Y1IK26_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK26_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 3.510e-6
Identity = 43/129 (33.33%), Postives = 62/129 (48.06%), Query Frame = 1
Query:    1 VTSVSPQNISLAGGTEVTIMGSGFPTARSDAVEVTLELESGDVACNIQSISYNQIRCRSEPVSAFSTLDAGHVLVKLPGQVPETRTLL-NAISAGESLTPVLLSVSPARVSAAGGTLVTILGHNLVDAN 384
            VTSVSP N S+ GGT +T+ G GF     D +     +  G ++C + S S  Q+RC ++            + +        T T+L  A S   SLTP + SV+PA++  A  TLVT+ G      N
Sbjct: 1808 VTSVSPANGSVYGGTVLTVQGLGFSANSGDYL-----VSIGGLSCKVLSSSAQQLRCVTQXXXXXXXXXXXXIGL--------TSTVLPKAFSYLTSLTPAVSSVNPAQIPPATSTLVTLTGTLFTQTN 1923          
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Match: R7TME9_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TME9_CAPTE)

HSP 1 Score: 54.3 bits (129), Expect = 6.520e-6
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 1
Query:    1 VTSVSPQNISLAGGTEVTIMGSGFPTARSDAVEVTLELESGDVACNIQSISYNQIRCRSEPVSAFSTLDAGHVLVKLPGQVPETRTLLNAISAGESL-TPVLLSVSPARVSAAGGTLVTILG 363
            VTS++P + S+AGGT +TI GSGF +  + A  VT    +  VAC+I+S++Y QI C +   + F + +   V V+  GQ  E     +      ++ TP + S++P  +S A  T +T+ G
Sbjct: 1476 VTSLNPISGSIAGGTRLTIQGSGFSSG-AQATSVT----TAGVACDIESVTYTQIICMT--TNGFESTEDIVVAVEANGQWIEASCKGSCSYTFSTIKTPFVTSINPVSISTAN-TTITLSG 1589          
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Match: UPI0018DC04FA (IPT/TIG domain-containing protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI0018DC04FA)

HSP 1 Score: 51.6 bits (122), Expect = 1.050e-5
Identity = 48/128 (37.50%), Postives = 62/128 (48.44%), Query Frame = 1
Query:    1 VTSVSPQNISLAGGTEVTIMGSGFPTARSDAVEVTLELESGDVACNIQSISYNQIRCRSEPVSAFSTLDAGHVLVKLPGQVPETRTLLNAISAGESLT-PVLLSVSPARVSAAGGTLVTILGHNLVDA 381
            VTSVSP   + AGGT VTI GSGF  A       T+     ++A N+  +S  QI  R+ P S       G V V + G  P   +  N      ++  PVL  +SPA   ++GG  VTI G NL  A
Sbjct:    5 VTSVSPAQGNPAGGTPVTINGSGFTGA-------TVVRFGPNLATNVVVVSTTQITARTPPGS-------GTVKVTVTG--PTGTSTQNVFFTYTTVAAPVLTMLSPASGPSSGGNTVTITGGNLAGA 116          
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Match: A0A6P8HCI9_ACTTE (fibrocystin-L-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HCI9_ACTTE)

HSP 1 Score: 53.1 bits (126), Expect = 1.660e-5
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 VTSVSPQNISLAGGTEVTIMGSGFPTARSDAVEVTLELESGDVACNIQSISYNQIRCRSEPVSAFSTLDAGH 216
            V SV P + SLAGGT +TI G GF T + D V+V +    G   CNIQ ++Y+QI+C ++P +    L  G+
Sbjct:  254 VKSVKPSSGSLAGGTMLTITGEGFGT-KMDKVQVKI----GGANCNIQEVTYSQIKCITDPHNQTKVLYPGN 320          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80322.18821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
UPI0018D7B7583.860e-936.00fibrocystin-L-like n=1 Tax=Patiria miniata TaxID=4... [more]
UPI000854C4E34.600e-838.21fibrocystin-L n=1 Tax=Nanorana parkeri TaxID=12587... [more]
A0A6P4Y2K7_BRABE1.160e-739.67fibrocystin-L-like n=1 Tax=Branchiostoma belcheri ... [more]
A0A8B7YM92_ACAPL7.260e-734.15fibrocystin-L-like n=1 Tax=Acanthaster planci TaxI... [more]
A0A7M7NVK1_STRPU1.390e-635.16Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A8J1TPR0_OWEFU2.570e-631.78Ofus.G052381 protein (Fragment) n=2 Tax=Owenia fus... [more]
A0A1Y1IK26_KLENI3.510e-633.33Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
R7TME9_CAPTE6.520e-634.43Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
UPI0018DC04FA1.050e-537.50IPT/TIG domain-containing protein n=2 Tax=Streptom... [more]
A0A6P8HCI9_ACTTE1.660e-543.06fibrocystin-L-like n=1 Tax=Actinia tenebrosa TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80322contigM-pyrifera_M_contig80322:108..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.813011-CDS-M-pyrifera_M_contig80322:107..4911622816708.813011-CDS-M-pyrifera_M_contig80322:107..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80322 108..491 -
1692278133.0033922-CDS-M-pyrifera_M_contig80322:107..4911692278133.0033922-CDS-M-pyrifera_M_contig80322:107..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80322 108..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80322.18821.1prot_M-pyrifera_M_contig80322.18821.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80322 108..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80322.18821.1

>prot_M-pyrifera_M_contig80322.18821.1 ID=prot_M-pyrifera_M_contig80322.18821.1|Name=mRNA_M-pyrifera_M_contig80322.18821.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
VTSVSPQNISLAGGTEVTIMGSGFPTARSDAVEVTLELESGDVACNIQSI
SYNQIRCRSEPVSAFSTLDAGHVLVKLPGQVPETRTLLNAISAGESLTPV
LLSVSPARVSAAGGTLVTILGHNLVDAN
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mRNA from alignment at M-pyrifera_M_contig80322:108..491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80322.18821.1 ID=mRNA_M-pyrifera_M_contig80322.18821.1|Name=mRNA_M-pyrifera_M_contig80322.18821.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig80322:108..491- (Macrocystis pyrifera P11B4 male)
GTGACCAGCGTTTCACCCCAAAACATCTCCTTGGCCGGTGGGACGGAAGT GACAATTATGGGTTCTGGATTCCCTACCGCCAGGTCTGATGCAGTAGAAG TCACACTGGAATTAGAAAGTGGCGACGTTGCATGCAACATACAGTCTATT TCCTACAACCAAATTCGTTGTCGCTCCGAACCAGTATCTGCATTTTCCAC CCTTGATGCTGGACATGTTCTCGTGAAACTTCCAGGGCAAGTTCCAGAAA CAAGAACATTGCTCAACGCGATTTCTGCTGGTGAATCACTCACCCCTGTC CTCCTCTCCGTCTCCCCTGCACGAGTATCTGCAGCAGGTGGCACTCTGGT AACCATTCTTGGTCACAATCTTGTCGATGCAAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80322:108..491-

>mRNA_M-pyrifera_M_contig80322.18821.1 ID=mRNA_M-pyrifera_M_contig80322.18821.1|Name=mRNA_M-pyrifera_M_contig80322.18821.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig80322:108..491- (Macrocystis pyrifera P11B4 male)
GTGACCAGCGTTTCACCCCAAAACATCTCCTTGGCCGGTGGGACGGAAGT
GACAATTATGGGTTCTGGATTCCCTACCGCCAGGTCTGATGCAGTAGAAG
TCACACTGGAATTAGAAAGTGGCGACGTTGCATGCAACATACAGTCTATT
TCCTACAACCAAATTCGTTGTCGCTCCGAACCAGTATCTGCATTTTCCAC
CCTTGATGCTGGACATGTTCTCGTGAAACTTCCAGGGCAAGTTCCAGAAA
CAAGAACATTGCTCAACGCGATTTCTGCTGGTGAATCACTCACCCCTGTC
CTCCTCTCCGTCTCCCCTGCACGAGTATCTGCAGCAGGTGGCACTCTGGT
AACCATTCTTGGTCACAATCTTGTCGATGCAAATGTGACCAGCGTTTCAC
CCCAAAACATCTCCTTGGCCGGTGGGACGGAAGTGACAATTATGGGTTCT
GGATTCCCTACCGCCAGGTCTGATGCAGTAGAAGTCACACTGGAATTAGA
AAGTGGCGACGTTGCATGCAACATACAGTCTATTTCCTACAACCAAATTC
GTTGTCGCTCCGAACCAGTATCTGCATTTTCCACCCTTGATGCTGGACAT
GTTCTCGTGAAACTTCCAGGGCAAGTTCCAGAAACAAGAACATTGCTCAA
CGCGATTTCTGCTGGTGAATCACTCACCCCTGTCCTCCTCTCCGTCTCCC
CTGCACGAGTATCTGCAGCAGGTGGCACTCTGGTAACCATTCTTGGTCAC
AATCTTGTCGATGCAAAT
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