mRNA_M-pyrifera_M_contig80318.18820.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80318.18820.1
Unique NamemRNA_M-pyrifera_M_contig80318.18820.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Match: A0A1F7EZE8_9BACT (DUF1565 domain-containing protein n=1 Tax=Candidatus Raymondbacteria bacterium RIFOXYD12_FULL_49_13 TaxID=1817890 RepID=A0A1F7EZE8_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 5.530e-7
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   19 LGLLYFAATFVCIEAQQTYYVATDGSDSYDGTPTMPFLTLGEALTASQAGDTIVIGGGQYSG 204
            LG+L F       +A  TYYV++ GSDS  GT T P+ T+G+A +  QAGDT+ I  G YSG
Sbjct:    8 LGVLLFVIIAATAQAA-TYYVSSSGSDSNPGTLTSPWKTIGKANSTLQAGDTVYIRVGTYSG 68          
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Match: A0A150R5E6_SORCE (Uncharacterized protein (Fragment) n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150R5E6_SORCE)

HSP 1 Score: 52.8 bits (125), Expect = 3.160e-6
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   73 YYVATDGSDSYDGTPTMPFLTLGEALTASQAGDTIVIGGGQYSGSDN 213
            YYVAT+GSDS  GT   PF T+ + + A+ AGDT+ I GG Y+G  N
Sbjct:    8 YYVATNGSDSNPGTLDRPFKTISKGVNAANAGDTVYIRGGTYTGWSN 54          
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Match: A0A0Q9MK61_9BACL (Beta_helix domain-containing protein n=2 Tax=unclassified Paenibacillus TaxID=185978 RepID=A0A0Q9MK61_9BACL)

HSP 1 Score: 52.4 bits (124), Expect = 4.500e-6
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   61 AQQTYYVATDGSDSYDGTP-TMPFLTLGEALTASQAGDTIVIGGGQY 198
            A  TYYVAT+GSDS +GT  + PFLT+ +A  A+QAGDT+ I GG Y
Sbjct:   37 AGTTYYVATNGSDSNNGTSLSTPFLTIQKAALAAQAGDTVNIRGGTY 83          
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Match: A0A7X0VYE0_9BACL (DUF1565 domain-containing protein n=1 Tax=Cohnella zeiphila TaxID=2761120 RepID=A0A7X0VYE0_9BACL)

HSP 1 Score: 51.6 bits (122), Expect = 8.410e-6
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    4 KLSTALGLLYFAATFVCIE-----AQQTYYVATDGSDSYDGTP-TMPFLTLGEALTASQAGDTIVIGGGQY 198
             L+ A+ LL   A+ V        A  +YYVAT+GSDS +GT  + PF T+ +A + +QAGDT+ I GG Y
Sbjct:   12 SLALAMALLLVVASVVLFRPEAARAASSYYVATNGSDSNNGTSLSTPFKTIQKAASVAQAGDTVYIRGGTY 82          
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Match: A0A1C6B3F9_9FIRM (Bacterial Ig-like domain (Group 2) n=1 Tax=uncultured Ruminococcus sp. TaxID=165186 RepID=A0A1C6B3F9_9FIRM)

HSP 1 Score: 51.6 bits (122), Expect = 8.480e-6
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1
Query:   67 QTYYVATDGSDSYDGTPTMPFLTLGEALTASQAGDTIVIGGGQY 198
            QTYYVATDGSD+ DG+   PF T  +A    Q GDT +I GG Y
Sbjct:   36 QTYYVATDGSDTNDGSLNAPFKTFQKAAETLQPGDTCIIRGGTY 79          
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Match: A0A350Y0N8_9CYAN (Beta_helix domain-containing protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A350Y0N8_9CYAN)

HSP 1 Score: 51.2 bits (121), Expect = 1.120e-5
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 1
Query:   61 AQQTYYVATDGSDSYDGTPTMPFLTLGEALTASQAGDTIVIGGGQY 198
            A  TYYVAT+GSDS  GT   PF T+  A   +Q GDTI I GG Y
Sbjct:   59 AINTYYVATNGSDSNSGTQQYPFATIAYAANKAQPGDTIYIRGGTY 104          
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Match: A0A7W8GSH4_RHILE (Serralysin n=61 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A7W8GSH4_RHILE)

HSP 1 Score: 50.8 bits (120), Expect = 1.560e-5
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   70 TYYVATDGSDSYDGTPTMPFLTLGEALTAS-QAGDTIVIGGGQYSGSDNI 216
            TYYVAT GSDS +G+ T PF T+ EA++A+ + GD +V+  G Y+ S NI
Sbjct:    3 TYYVATTGSDSGNGSTTSPFRTISEAMSANLRPGDEVVVKAGTYNESINI 52          
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Match: A0A352NAI2_9BACT (Calx-beta domain-containing protein n=2 Tax=Lentisphaerae TaxID=256845 RepID=A0A352NAI2_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 2.120e-5
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 1
Query:   46 FVCIEAQQT--YYVATDGSDSYDGTPTMPFLTLGEALTASQAGDTIVIGGGQYSGSDNIGL 222
            F+C+       YYVA  G+DS+ GT + P+LT+G+A +   AGDT  +  G YSG   I +
Sbjct:   20 FICVVGVTATEYYVAVTGNDSWPGTISQPWLTIGKAASTLNAGDTCHVLAGTYSGKPTISI 80          
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Match: A0A0Q9U7B9_9BACL (Beta_helix domain-containing protein n=1 Tax=Paenibacillus sp. Soil787 TaxID=1736411 RepID=A0A0Q9U7B9_9BACL)

HSP 1 Score: 50.4 bits (119), Expect = 2.150e-5
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   61 AQQTYYVATDGSDSYDGTP-TMPFLTLGEALTASQAGDTIVIGGGQY 198
            A  TYYVAT+GSDS +GT  + PFLT+ +A   +QAGDT+ + GG Y
Sbjct:   37 AGTTYYVATNGSDSNNGTSVSTPFLTIQKAALTAQAGDTVNVRGGTY 83          
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Match: UPI0018E53354 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Algibacillus agarilyticus TaxID=2234133 RepID=UPI0018E53354)

HSP 1 Score: 49.3 bits (116), Expect = 5.470e-5
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   73 YYVATDGSDSYDGTPTMPFLTLGEALTASQAGDTIVIGGGQYSGSDNI 216
            YYV+  GSD+ DG+ ++PF T  +A++   AGDT +I GG Y+ + NI
Sbjct:  164 YYVSLTGSDTNDGSESLPFATFAKAVSVMSAGDTAIIKGGTYTETLNI 211          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80318.18820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A1F7EZE8_9BACT5.530e-748.39DUF1565 domain-containing protein n=1 Tax=Candidat... [more]
A0A150R5E6_SORCE3.160e-653.19Uncharacterized protein (Fragment) n=1 Tax=Sorangi... [more]
A0A0Q9MK61_9BACL4.500e-659.57Beta_helix domain-containing protein n=2 Tax=uncla... [more]
A0A7X0VYE0_9BACL8.410e-643.66DUF1565 domain-containing protein n=1 Tax=Cohnella... [more]
A0A1C6B3F9_9FIRM8.480e-656.82Bacterial Ig-like domain (Group 2) n=1 Tax=uncultu... [more]
A0A350Y0N8_9CYAN1.120e-556.52Beta_helix domain-containing protein n=2 Tax=uncla... [more]
A0A7W8GSH4_RHILE1.560e-552.00Serralysin n=61 Tax=Rhizobium/Agrobacterium group ... [more]
A0A352NAI2_9BACT2.120e-540.98Calx-beta domain-containing protein n=2 Tax=Lentis... [more]
A0A0Q9U7B9_9BACL2.150e-555.32Beta_helix domain-containing protein n=1 Tax=Paeni... [more]
UPI0018E533545.470e-545.83right-handed parallel beta-helix repeat-containing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80318contigM-pyrifera_M_contig80318:492..716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.7789335-CDS-M-pyrifera_M_contig80318:491..7161622816708.7789335-CDS-M-pyrifera_M_contig80318:491..716Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80318 492..716 -
1692278132.9888391-CDS-M-pyrifera_M_contig80318:491..7161692278132.9888391-CDS-M-pyrifera_M_contig80318:491..716Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80318 492..716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80318.18820.1prot_M-pyrifera_M_contig80318.18820.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80318 492..716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80318.18820.1

>prot_M-pyrifera_M_contig80318.18820.1 ID=prot_M-pyrifera_M_contig80318.18820.1|Name=mRNA_M-pyrifera_M_contig80318.18820.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MKLSTALGLLYFAATFVCIEAQQTYYVATDGSDSYDGTPTMPFLTLGEAL
TASQAGDTIVIGGGQYSGSDNIGLT
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mRNA from alignment at M-pyrifera_M_contig80318:492..716-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80318.18820.1 ID=mRNA_M-pyrifera_M_contig80318.18820.1|Name=mRNA_M-pyrifera_M_contig80318.18820.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig80318:492..716- (Macrocystis pyrifera P11B4 male)
ATGAAGCTTTCTACAGCACTTGGTCTGCTGTATTTTGCTGCTACCTTCGT ATGTATCGAGGCTCAGCAAACCTACTATGTTGCTACGGATGGCTCAGATT CGTATGACGGCACGCCGACGATGCCATTCCTGACGCTCGGCGAGGCCTTG ACGGCTTCTCAGGCAGGAGATACCATAGTGATTGGCGGGGGCCAGTACAG TGGCTCGGATAATATCGGTCTCACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80318:492..716-

>mRNA_M-pyrifera_M_contig80318.18820.1 ID=mRNA_M-pyrifera_M_contig80318.18820.1|Name=mRNA_M-pyrifera_M_contig80318.18820.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig80318:492..716- (Macrocystis pyrifera P11B4 male)
ATGAAGCTTTCTACAGCACTTGGTCTGCTGTATTTTGCTGCTACCTTCGT
ATGTATCGAGGCTCAGCAAACCTACTATGTTGCTACGGATGGCTCAGATT
CGTATGACGGCACGCCGACGATGCCATTCCTGACGCTCGGCGAGGCCTTG
ACGGCTTCTCAGGCAGGAGATACCATAGTGATTGGCGGGGGCCAGTACAG
TGGCTCGGATAATATCGGTCTCACTATGAAGCTTTCTACAGCACTTGGTC
TGCTGTATTTTGCTGCTACCTTCGTATGTATCGAGGCTCAGCAAACCTAC
TATGTTGCTACGGATGGCTCAGATTCGTATGACGGCACGCCGACGATGCC
ATTCCTGACGCTCGGCGAGGCCTTGACGGCTTCTCAGGCAGGAGATACCA
TAGTGATTGGCGGGGGCCAGTACAGTGGCTCGGATAATATCGGTCTCACT
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