mRNA_M-pyrifera_M_contig8030.18816.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8030.18816.1
Unique NamemRNA_M-pyrifera_M_contig8030.18816.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8030.18816.1 vs. uniprot
Match: D8LM76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM76_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.470e-29
Identity = 57/112 (50.89%), Postives = 82/112 (73.21%), Query Frame = 1 
Query:    4 VAQAIRNVELGKENRDDQDDGVEEEGGEL--------EMPVWDRVQMSLGLGKWSYAGLGLALFIIFLNNWLGVGWLTRAMTPDFDTEGLVDIEQRGQQIQVMPMDDPSNLL 315
            +A+A+RN E   E   D ++GVEEEG  +        +MPVW++VQ +LGLG WSY GLGLA+FII LNN LGVGW T+ + P+++ + +++++Q+G+QIQ MP+DD SNLL
Sbjct:  104 MARALRNAEREIEGGGDYEEGVEEEGEGVGNQEAVVNQMPVWEKVQAALGLGVWSYVGLGLAVFIIVLNNVLGVGWATKIINPEYEPDSVLEVQQQGRQIQYMPLDDASNLL 215
[Close]
BLAST of mRNA_M-pyrifera_M_contig8030.18816.1 vs. uniprot
Match: A0A6H5KPT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.330e-28
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 1 
Query:    4 VAQAIRNVELGKENRDDQDDGVEEEG---GELE-----MPVWDRVQMSLGLGKWSYAGLGLALFIIFLNNWLGVGWLTRAMTPDFDTEGLVDIEQRGQQIQVMPMDDPSNLL 315
            +A+A+RN E   E   D ++GVEEEG   G  E     MPVW++VQ +LGLG WSY GLGLA+FII LNN LGVGW T+ + P+++ + +++++Q+G+QIQ MP+DD SNLL
Sbjct:  175 MARALRNAEREIEGGGDYEEGVEEEGEVGGNQEAAVNQMPVWEKVQAALGLGVWSYVGLGLAVFIIVLNNVLGVGWATKIINPEYEPDSVLEVQQQGRQIQYMPLDDASNLL 286
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8030.18816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM76_ECTSI4.470e-2950.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPT2_9PHAE3.330e-2852.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8030contigM-pyrifera_M_contig8030:9349..10273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005800.1
Exons1
Model size925
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8030.18816.1prot_M-pyrifera_M_contig8030.18816.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8030 9442..9666 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.5611045-UTR-M-pyrifera_M_contig8030:9348..94411622816708.5611045-UTR-M-pyrifera_M_contig8030:9348..9441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8030 9349..9441 +
1692278132.853914-UTR-M-pyrifera_M_contig8030:9348..94411692278132.853914-UTR-M-pyrifera_M_contig8030:9348..9441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8030 9349..9441 +
1622816708.588536-UTR-M-pyrifera_M_contig8030:9666..102731622816708.588536-UTR-M-pyrifera_M_contig8030:9666..10273Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8030 9667..10273 +
1692278132.8822901-UTR-M-pyrifera_M_contig8030:9666..102731692278132.8822901-UTR-M-pyrifera_M_contig8030:9666..10273Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8030 9667..10273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.5753727-CDS-M-pyrifera_M_contig8030:9441..96661622816708.5753727-CDS-M-pyrifera_M_contig8030:9441..9666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8030 9442..9666 +
1692278132.8715818-CDS-M-pyrifera_M_contig8030:9441..96661692278132.8715818-CDS-M-pyrifera_M_contig8030:9441..9666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8030 9442..9666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8030.18816.1

>prot_M-pyrifera_M_contig8030.18816.1 ID=prot_M-pyrifera_M_contig8030.18816.1|Name=mRNA_M-pyrifera_M_contig8030.18816.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MPVWDRVQMSLGLGKWSYAGLGLALFIIFLNNWLGVGWLTRAMTPDFDTE
GLVDIEQRGQQIQVMPMDDPSNLL*
back to top

mRNA from alignment at M-pyrifera_M_contig8030:9349..10273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8030.18816.1 ID=mRNA_M-pyrifera_M_contig8030.18816.1|Name=mRNA_M-pyrifera_M_contig8030.18816.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=925bp|location=Sequence derived from alignment at M-pyrifera_M_contig8030:9349..10273+ (Macrocystis pyrifera P11B4 male)
CGGGTGGCCCAGGCAATACGGAACGTGGAGCTAGGGAAGGAGAATCGGGA
CGACCAGGACGATGGAGTTGAGGAGGAAGGGGGCGAGTTGGAGATGCCCG
TCTGGGACAGGGTCCAGATGTCGCTGGGGCTGGGCAAGTGGAGCTACGCC
GGCCTGGGCCTGGCGCTGTTCATCATCTTCCTCAACAACTGGCTCGGGGT
GGGGTGGCTAACCCGTGCGATGACGCCGGACTTCGACACGGAGGGCCTGG
TCGACATTGAGCAACGAGGGCAGCAGATCCAGGTCATGCCTATGGACGAC
CCCAGCAACCTCCTCTAGGTTACCTGTCAGCTGCGGGCGATGGACGTTGG
ACAGCTGGATGGACCTGAAACCCACTGTGTCCAACGGGGAGGAGGGACAG
AGATAATCAGAGAGGGGGGGGGAGAGAGAGCACCAGACGACGGGAAACCT
TCCAACCTCGCGTTTCGACCGACTTGGCGACTGGCGACCTCTCTTTTTGT
AGCTATACGATGTCAACCATTTTTCTAGAGCAAAGTAATGACTGACCTGA
GGCATTTGTTACTATCACAGCTGCCGCTTTTATAGCAGAGAGGGCAGAAA
ACAATAGCTGGCTTGGAAAGGCGAAGGGGAGAGGGTTTTGATTCCACCGC
CAGATTGGACCAGGTCATGAAAGATAGAAGGTCGAAGCAGATCAGCAAGC
AGGGTTGGGCCACAGACTTGCGTGTAATGATTAGGCATTGTGGGGAGCAG
GCTTACAAATGGTACCAGCTACACAAGGGCTGATCTCGATGTCAATAGGC
TCCGCATCTGGAAGAAGAGTCGCGGCGAACTAGAAATTGGCGCCACTCCT
TTCGTTGTTAGGGCCCATCTTAACGGGGACTTTCGGCTCTTTCAATTTGA
CTTGATTTTTTTTCTAATTTAATTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8030:9349..10273+

>mRNA_M-pyrifera_M_contig8030.18816.1 ID=mRNA_M-pyrifera_M_contig8030.18816.1|Name=mRNA_M-pyrifera_M_contig8030.18816.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig8030:9349..10273+ (Macrocystis pyrifera P11B4 male)
ATGCCCGTCTGGGACAGGGTCCAGATGTCGCTGGGGCTGGGCAAGTGGAG
CTACGCCGGCCTGGGCCTGGCGCTGTTCATCATCTTCCTCAACAACTGGC
TCGGGGTGGGGTGGCTAACCCGTGCGATGACGCCGGACTTCGACACGGAG
GGCCTGGTCGACATTGAGCAACGAGGGCAGCAGATCCAGGTCATGCCTAT
GGACGACCCCAGCAACCTCCTCTAGATGCCCGTCTGGGACAGGGTCCAGA
TGTCGCTGGGGCTGGGCAAGTGGAGCTACGCCGGCCTGGGCCTGGCGCTG
TTCATCATCTTCCTCAACAACTGGCTCGGGGTGGGGTGGCTAACCCGTGC
GATGACGCCGGACTTCGACACGGAGGGCCTGGTCGACATTGAGCAACGAG
GGCAGCAGATCCAGGTCATGCCTATGGACGACCCCAGCAACCTCCTCTAG
back to top