mRNA_M-pyrifera_M_contig8016.18787.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Match: D7FV84_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV84_ECTSI) HSP 1 Score: 403 bits (1035), Expect = 1.630e-137 Identity = 210/319 (65.83%), Postives = 245/319 (76.80%), Query Frame = 1 Query: 1 SFKGKAKVGTVPSMEKVYHALIAGTVTPDEKGVHQLREPLHFSRKLDGPGGDWTKPAEARVLLTKTYVSGQSVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLKEGFSRELSRREVEALYKRCLPIDPLCPTVAEVQETLTSRLTQTARRLREASELAG--CQSGKISGAGEVEETGAGVAVVGDNNSARVCTENS--------RTHVGVGMGDV------EGLESIVRTLIDFARRDLHETPPGPDGESAGPKYCPGEEESLAQARAVPPNEAHMTDGYRCSRIEKLGLKYSSM 909 ++KGKA VGTVPSMEKVYH L+AGT+TP++KG+ L+EPLHFSRKLDGPGG WTKPAEARVLLTKT+ +GQ VPWRFKPGT ATITWIEVVLREGKNRQIRRLCRRSEFELTRLHR+SVGPIVLGD++EG REL+R+EVEALYKRCLP DPLCPT+ VQ+ L SRL+QTARR+R +E+ G ++ + S A +V + ++ R + RT G G V E L SI++ LIDFARRDLHETP GPDGESAGP YCPGE+ESLAQARAVPPNE HM GYR S+IE+LGL Y +M Sbjct: 69 TYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPEDPLCPTIDAVQDILQSRLSQTARRIRTTAEVGGHRFKAREHSSAMDVPQKDMPERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRRVKAFATEEDLASIMKRLIDFARRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 387
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Match: A0A6H5L3F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F2_9PHAE) HSP 1 Score: 319 bits (818), Expect = 4.110e-106 Identity = 171/269 (63.57%), Postives = 195/269 (72.49%), Query Frame = 1 Query: 151 GDWTKPAEARVLLTKTYVSGQSVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLKEGFSRELSRREVEALYKRCLPIDPLCPTVAEVQETLTSRLTQTARRLREASELAG--CQSGKISGAGEVEETGAGVAVVGDNNSARVCTENSRTHVGV--------------GMGDVEGLESIVRTLIDFARRDLHETPPGPDGESAGPKYCPGEEESLAQARAVPPNEAHMTDGYRCSRIEKLGLKYSSM 909 G WTKPAEARVLLTKT+ +GQ VPWRFKPGT ATITWIEVVLREGKNRQIRRLCRRSEFELTRLHR+SVGPIVLGD+ EG REL+RREVEALYKRCLP DPLCPT+ VQ+ L SRL QTARR+R A+E+ G ++ + S A +V + A ++ R + G E L SIV+ LIDF+RRDLHETP GPDGESAGP YCPGE+ESLAQARAVPPNE HM GYR S+IE+LGL Y +M Sbjct: 15 GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVAEGSCRELTRREVEALYKRCLPEDPLCPTIDAVQDILKSRLAQTARRIRTAAEVGGHRFEAREHSSAMDVPQKDAPERPTREDAEQRWAAKVRDGECGCPXXXXXXXXXXRAKAFAGEEDLASIVKRLIDFSRRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 283
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Match: A0A838IEP5_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IEP5_9DELT) HSP 1 Score: 84.0 bits (206), Expect = 1.220e-15 Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 40 MEKVYHALIAGTVTPDEKGVHQLREPLHFSRKLDGPGGDWTKPAEARVLLTKTYVSGQSVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLKEGFSRELSRREVEALYKRCLPIDPL 459 +EKVYH I G V + + +L EPL GPG T+PA ARV+ + S WIE+V+ EG++RQ+R+LC RS ++ +L R+ +GP+ LG+L+ + R L R EV ALY L D L Sbjct: 68 VEKVYHVKIKGIVEDGDARLARLEEPLK-----SGPGKT-TEPARARVVERRDKTS-----------------WIELVICEGRHRQVRKLCERSGLQIRKLRRMRLGPLELGELRLRWCRPLERAEVAALYAAALADDAL 184
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Match: A0A525VTS7_9BACT (Pseudouridine synthase n=2 Tax=unclassified Nitrospira TaxID=2652172 RepID=A0A525VTS7_9BACT) HSP 1 Score: 82.8 bits (203), Expect = 2.910e-15 Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 82 PDEKGVHQLREPLHFSRKLDGPGGDWTKPAEARVLLTKTYVSGQSVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLKEGFSRELSRREVEALY 432 P+E+ + QLR + S K T+PAE R+L +S +SVP RF+ W+E+ LREG NRQ+RR+ RL RV+VGPIVLG L+ G REL+ E+E +Y Sbjct: 82 PNEEALEQLRAGVVLSGKK-------TRPAEVRLLANHPQLSDRSVPIRFRKNVPTA--WVEMTLREGMNRQVRRMTASVGHPTLRLVRVAVGPIVLGGLQAGEWRELTSGEIEQIY 189
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Match: A0A532DIV7_9BACT (Pseudouridine synthase n=2 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532DIV7_9BACT) HSP 1 Score: 79.0 bits (193), Expect = 6.330e-14 Identity = 50/131 (38.17%), Postives = 72/131 (54.96%), Query Frame = 1 Query: 40 MEKVYHALIAGTVTPDEKGVHQLREPLHFSRKLDGPGGDWTKPAEARVLLTKTYVSGQSVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLKEGFSRELSRREVEALY 432 + KVY L+ P E+ + QLRE + + K+ TKPAE R+L + + VP RF+ W+E+ LREG NRQ+RR+ RL RV+VGPIVLG ++ G R+L+ E+E +Y Sbjct: 70 LAKVY--LVQIERVPKEEVLRQLREGVMLNGKI-------TKPAEVRLLPDDPQLPDRPVPIRFRKNVPTA--WVEMTLREGLNRQVRRMTASVGHPTLRLVRVAVGPIVLGGIQPGEWRDLTSSEIEQIY 189
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Match: A0A7V2V0T7_9BACT (Pseudouridine synthase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V2V0T7_9BACT) HSP 1 Score: 80.9 bits (198), Expect = 6.510e-14 Identity = 52/141 (36.88%), Postives = 74/141 (52.48%), Query Frame = 1 Query: 10 GKAKVGTVPSMEKVYHALIAGTVTPDEKGVHQLREPLHFSRKLDGPGGDW-TKPAEARVLLTKTYVSGQSVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLKEGFSRELSRREVEAL 429 G G + K Y A + G +T ++G+ +LR+ + G W T+PAE R+L R GTT W+E+ LREG NRQ+RR+C+ E+ +L R+ VGP+ LG L G R L+RRE+EAL Sbjct: 157 GALIAGVDSPVPKTYEAKVRGVMT--DEGIARLRQGVTL-------GDGWRTRPAEVRLL-------------RANEGTT----WLEITLREGMNRQVRRMCQAVGHEVIKLRRIRVGPVELGGLPSGAVRPLTRREIEAL 271
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Match: A0A533ZMC8_9BACT (Pseudouridine synthase n=5 Tax=unclassified Nitrospirae TaxID=1298915 RepID=A0A533ZMC8_9BACT) HSP 1 Score: 79.0 bits (193), Expect = 1.100e-13 Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = 1 Query: 40 MEKVYHALIAGTVTPDEKGVHQLREPLHFSRKLDGPGGDWTKPAEARVLLTKTYVSGQSVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLKEGFSRELSRREVEALYK 435 + K+Y A + P+++ + QLR + K T+PAE R+L + + VP RF+ W+E+ LREG NRQ+RR+ E RL R+++GPI+LGDL+ G R+L+ E++ +Y+ Sbjct: 81 LPKIYLAQVERI--PNDEALAQLRAGILLKGKR-------TRPAEVRLLSDAPELPDRPVPIRFRKNVPTA--WLEITLREGLNRQVRRMTAAVEHPTVRLVRIAIGPIMLGDLQPGHWRDLANSEIDQIYR 201
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Match: A0A1W9IVN7_9BACT (Pseudouridine synthase n=1 Tax=Nitrospira sp. ST-bin5 TaxID=1978765 RepID=A0A1W9IVN7_9BACT) HSP 1 Score: 78.2 bits (191), Expect = 1.980e-13 Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 1 Query: 40 MEKVYHALIAGTVTPDEKGVHQLREPLHFSRKLDGPGGDWTKPAEARVLLTKTYVSGQSVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLKEGFSRELSRREVEAL 429 + KVY L+ PDE+ + QLR+ + SR T+PAE R+L + + VP RF+ T WIE+ +REG NRQ+RR+ RL RV++GPI LG+L G REL+ EV+A+ Sbjct: 77 LPKVY--LVQVERIPDEQALRQLRQGVALSRTK-------TRPAEVRLLDEPPSLPDRPVPIRFRK--TVPTCWIEMTIREGMNRQVRRMTAAVGHPTLRLIRVAIGPIPLGNLAPGAWRELTAGEVQAI 195
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Match: E6SKM7_THEM7 (Pseudouridine synthase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) TaxID=644966 RepID=E6SKM7_THEM7) HSP 1 Score: 79.3 bits (194), Expect = 3.020e-13 Identity = 60/157 (38.22%), Postives = 82/157 (52.23%), Query Frame = 1 Query: 40 MEKVYHALIAGTVTPDEKGVHQLREPLHFSRKLDGPGGDWTKPAEARVLLTKTYVSGQSVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLKEGFSRELSRREVEALYKRC-LPI--DPLCPTVAEVQETLTSR 501 ++KVYH L+ G + P + +LR+ + DGP + AR+L R +PG W+EVVLREG+ RQ+RR+CR +++ RL RV+VGP+ LG L G R LSR+EVEAL LPI D P +TSR Sbjct: 136 VDKVYHVLVRGPLEPQR--LRRLRDGVLLD---DGPA----RARSARIL-------------RPRPGGG----WVEVVLREGRKRQVRRMCRAVGWDVVRLVRVAVGPLRLGRLTAGQWRPLSRQEVEALRAAAGLPIHGDEPAPREGGAAPAITSR 266
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Match: A0A533XS16_9BACT (Pseudouridine synthase n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A533XS16_9BACT) HSP 1 Score: 77.0 bits (188), Expect = 3.510e-13 Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 1 Query: 40 MEKVYHALIAGTVTPDEKGVHQLREPLHFSRKLDGPGGDWTKPAEARVLLTKTYVSGQSVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLKEGFSRELSRREV 420 + KVY A + P+EK + QLR+ + GG T+P E +L + + VP RF+ W+E++L EG NRQ+RR+ RL RV++GP+VLGDL+ G REL+ RE+ Sbjct: 74 LPKVYLAQVERI--PNEKALEQLRKGVVL-------GGKKTRPVEVGLLPDHPQLPDRPVPIRFRKNVVTA--WLEIILHEGLNRQVRRMTATVGHPTLRLVRVAIGPVVLGDLQPGHWRELTSREI 189 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8016.18787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8016.18787.1 >prot_M-pyrifera_M_contig8016.18787.1 ID=prot_M-pyrifera_M_contig8016.18787.1|Name=mRNA_M-pyrifera_M_contig8016.18787.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=304bp SFKGKAKVGTVPSMEKVYHALIAGTVTPDEKGVHQLREPLHFSRKLDGPGback to top mRNA from alignment at M-pyrifera_M_contig8016:5991..10076- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig8016.18787.1 ID=mRNA_M-pyrifera_M_contig8016.18787.1|Name=mRNA_M-pyrifera_M_contig8016.18787.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4086bp|location=Sequence derived from alignment at M-pyrifera_M_contig8016:5991..10076- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig8016:5991..10076- >mRNA_M-pyrifera_M_contig8016.18787.1 ID=mRNA_M-pyrifera_M_contig8016.18787.1|Name=mRNA_M-pyrifera_M_contig8016.18787.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1824bp|location=Sequence derived from alignment at M-pyrifera_M_contig8016:5991..10076- (Macrocystis pyrifera P11B4 male)back to top |