mRNA_M-pyrifera_M_contig80032.18770.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80032.18770.1
Unique NamemRNA_M-pyrifera_M_contig80032.18770.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Match: W5PHL0_SHEEP (Histone H4 n=3 Tax=Artiodactyla TaxID=91561 RepID=W5PHL0_SHEEP)

HSP 1 Score: 197 bits (501), Expect = 8.600e-64
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 FSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 312
            F+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG
Sbjct:    2 FAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Match: D2I091_AILME (Histone H4 (Fragment) n=3 Tax=Bilateria TaxID=33213 RepID=D2I091_AILME)

HSP 1 Score: 197 bits (500), Expect = 1.220e-63
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 FSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 312
            F MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG
Sbjct:    2 FDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 105
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BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Match: K9IQ88_DESRO (Histone H4 (Fragment) n=1 Tax=Desmodus rotundus TaxID=9430 RepID=K9IQ88_DESRO)

HSP 1 Score: 197 bits (500), Expect = 1.350e-63
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 FSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 312
            F MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG
Sbjct:    5 FGMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Match: A0A6I9KB76_CHRAS (Histone H4 n=2 Tax=Eutheria TaxID=9347 RepID=A0A6I9KB76_CHRAS)

HSP 1 Score: 197 bits (501), Expect = 1.350e-63
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 FSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 312
            F+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG
Sbjct:   16 FAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 119
[Close]
BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Match: A0A2J6LJW1_LACSA (Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LJW1_LACSA)

HSP 1 Score: 197 bits (502), Expect = 2.000e-63
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 FSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 312
            F MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct:   39 FQMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 142
[Close]
BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Match: A0A6G1SJU5_9ACAR (Histone H4 (Fragment) n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SJU5_9ACAR)

HSP 1 Score: 197 bits (501), Expect = 2.420e-63
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 FSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 312
            F+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG
Sbjct:   34 FNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Match: UPI0010A2799E (histone H4 n=1 Tax=Macaca mulatta TaxID=9544 RepID=UPI0010A2799E)

HSP 1 Score: 197 bits (501), Expect = 2.580e-63
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 FSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 312
            F+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG
Sbjct:   36 FAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Match: W5QFN8_SHEEP (Histone H4 n=2 Tax=Bilateria TaxID=33213 RepID=W5QFN8_SHEEP)

HSP 1 Score: 196 bits (498), Expect = 2.900e-63
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 FSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 312
            F MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG
Sbjct:    7 FIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Match: A0A1A6FWH1_NEOLE (Histone H4 n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6FWH1_NEOLE)

HSP 1 Score: 197 bits (500), Expect = 3.010e-63
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 FSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 312
            F MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG
Sbjct:   30 FDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Match: A0A8C3W9Z8_9CETA (Histone H4 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A8C3W9Z8_9CETA)

HSP 1 Score: 196 bits (497), Expect = 3.290e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    4 SMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 312
            SMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG
Sbjct:    1 SMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80032.18770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W5PHL0_SHEEP8.600e-6498.08Histone H4 n=3 Tax=Artiodactyla TaxID=91561 RepID=... [more]
D2I091_AILME1.220e-6398.08Histone H4 (Fragment) n=3 Tax=Bilateria TaxID=3321... [more]
K9IQ88_DESRO1.350e-6398.08Histone H4 (Fragment) n=1 Tax=Desmodus rotundus Ta... [more]
A0A6I9KB76_CHRAS1.350e-6398.08Histone H4 n=2 Tax=Eutheria TaxID=9347 RepID=A0A6I... [more]
A0A2J6LJW1_LACSA2.000e-6398.08Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID... [more]
A0A6G1SJU5_9ACAR2.420e-6398.08Histone H4 (Fragment) n=1 Tax=Aceria tosichella Ta... [more]
UPI0010A2799E2.580e-6398.08histone H4 n=1 Tax=Macaca mulatta TaxID=9544 RepID... [more]
W5QFN8_SHEEP2.900e-6398.08Histone H4 n=2 Tax=Bilateria TaxID=33213 RepID=W5Q... [more]
A0A1A6FWH1_NEOLE3.010e-6398.08Histone H4 n=1 Tax=Neotoma lepida TaxID=56216 RepI... [more]
A0A8C3W9Z8_9CETA3.290e-6399.03Histone H4 n=2 Tax=Euteleostomi TaxID=117571 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80032contigM-pyrifera_M_contig80032:431..748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score196.4
Seed ortholog evalue6.4e-48
Seed eggNOG ortholog242159.ABO94316
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs34I42@3041,37UE8@33090,COG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size318
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.0817552-CDS-M-pyrifera_M_contig80032:430..7421622816706.0817552-CDS-M-pyrifera_M_contig80032:430..742Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80032 431..742 -
1692278131.355742-CDS-M-pyrifera_M_contig80032:430..7421692278131.355742-CDS-M-pyrifera_M_contig80032:430..742Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80032 431..742 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.0935173-UTR-M-pyrifera_M_contig80032:742..7481622816706.0935173-UTR-M-pyrifera_M_contig80032:742..748Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80032 743..748 -
1692278131.3704967-UTR-M-pyrifera_M_contig80032:742..7481692278131.3704967-UTR-M-pyrifera_M_contig80032:742..748Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80032 743..748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80032.18770.1prot_M-pyrifera_M_contig80032.18770.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80032 431..742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80032.18770.1

>prot_M-pyrifera_M_contig80032.18770.1 ID=prot_M-pyrifera_M_contig80032.18770.1|Name=mRNA_M-pyrifera_M_contig80032.18770.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGY*
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mRNA from alignment at M-pyrifera_M_contig80032:431..748-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80032.18770.1 ID=mRNA_M-pyrifera_M_contig80032.18770.1|Name=mRNA_M-pyrifera_M_contig80032.18770.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig80032:431..748- (Macrocystis pyrifera P11B4 male)
TTCAGCATGTCTGGCCGAGGAAAAGGAGGAAAGGGATTGGGAAAGGGAGG
CGCCAAGCGCCACCGCAAAGTTCTGCGTGACAACATCCAAGGGATCACCA
AACCAGCAATCCGCCGTTTGGCTCGCCGTGGTGGTGTCAAGCGTATCTCT
GGATTGATCTACGAGGAAACCCGTGGTGTCCTCAAGGTCTTCCTTGAGAA
CGTGATCCGTGACGCTGTCACCTACACCGAACACGCCCGCCGTAAGACCG
TCACCGCCATGGATGTCGTCTACGCGCTCAAGCGTCAAGGCCGCACCCTC
TATGGTTTCGGCTACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80032:431..748-

>mRNA_M-pyrifera_M_contig80032.18770.1 ID=mRNA_M-pyrifera_M_contig80032.18770.1|Name=mRNA_M-pyrifera_M_contig80032.18770.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig80032:431..748- (Macrocystis pyrifera P11B4 male)
ATGTCTGGCCGAGGAAAAGGAGGAAAGGGATTGGGAAAGGGAGGCGCCAA
GCGCCACCGCAAAGTTCTGCGTGACAACATCCAAGGGATCACCAAACCAG
CAATCCGCCGTTTGGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGGATTG
ATCTACGAGGAAACCCGTGGTGTCCTCAAGGTCTTCCTTGAGAACGTGAT
CCGTGACGCTGTCACCTACACCGAACACGCCCGCCGTAAGACCGTCACCG
CCATGGATGTCGTCTACGCGCTCAAGCGTCAAGGCCGCACCCTCTATGGT
TTCGGCTACTAAATGTCTGGCCGAGGAAAAGGAGGAAAGGGATTGGGAAA
GGGAGGCGCCAAGCGCCACCGCAAAGTTCTGCGTGACAACATCCAAGGGA
TCACCAAACCAGCAATCCGCCGTTTGGCTCGCCGTGGTGGTGTCAAGCGT
ATCTCTGGATTGATCTACGAGGAAACCCGTGGTGTCCTCAAGGTCTTCCT
TGAGAACGTGATCCGTGACGCTGTCACCTACACCGAACACGCCCGCCGTA
AGACCGTCACCGCCATGGATGTCGTCTACGCGCTCAAGCGTCAAGGCCGC
ACCCTCTATGGTTTCGGCTACTAA
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